Wall clock time and date at job start Mon Mar 30 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.50571 * 2 1 4 4 C 1.53125 * 109.50529 * 120.08034 * 2 1 3 5 5 C 1.53120 * 109.16123 * 177.59859 * 4 2 1 6 6 C 1.53035 * 109.27608 * 302.34051 * 5 4 2 7 7 N 1.46841 * 109.52600 * 59.18280 * 6 5 4 8 8 C 1.46852 * 111.23029 * 298.27855 * 7 6 5 9 9 H 1.08999 * 109.43145 * 301.68296 * 8 7 6 10 10 C 1.50707 * 109.49271 * 181.71640 * 8 7 6 11 11 O 1.21289 * 120.00472 * 319.96357 * 10 8 7 12 12 N 1.34774 * 119.99595 * 139.96892 * 10 8 7 13 13 C 1.37097 * 119.99965 * 184.82220 * 12 10 8 14 14 H 1.08006 * 120.00010 * 347.52953 * 13 12 10 15 15 C 1.38950 * 120.00172 * 167.51966 * 13 12 10 16 16 N 1.31411 * 120.00164 * 358.52777 * 15 13 12 17 17 Si 1.86800 * 120.00005 * 178.52216 * 15 13 12 18 18 H 1.48501 * 109.47194 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47156 * 120.00555 * 17 15 13 20 20 H 1.48501 * 109.47136 * 240.00508 * 17 15 13 21 21 C 1.46498 * 120.00419 * 4.82287 * 12 10 8 22 22 C 1.47201 * 109.47202 * 262.85396 * 21 12 10 23 23 N 5.46697 * 79.61352 * 225.13426 * 2 1 3 24 24 H 1.08994 * 109.46779 * 66.45724 * 1 2 3 25 25 H 1.08991 * 109.47202 * 306.45838 * 1 2 3 26 26 H 1.09004 * 109.46636 * 186.45655 * 1 2 3 27 27 H 1.08998 * 109.47583 * 59.99571 * 3 2 1 28 28 H 1.09001 * 109.47641 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47011 * 300.00275 * 3 2 1 30 30 H 1.09007 * 109.51885 * 297.49862 * 4 2 1 31 31 H 1.08996 * 109.52433 * 57.68753 * 4 2 1 32 32 H 1.08998 * 109.50661 * 62.28524 * 5 4 2 33 33 H 1.09000 * 109.50095 * 182.36376 * 5 4 2 34 34 H 1.09004 * 109.46388 * 179.20064 * 6 5 4 35 35 H 1.08998 * 109.46278 * 299.16226 * 6 5 4 36 36 H 1.00898 * 111.00700 * 174.15801 * 7 6 5 37 37 H 0.97003 * 120.00091 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47201 * 22.85386 * 21 12 10 39 39 H 1.08997 * 109.47533 * 142.85661 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4421 0.0000 4 6 2.0413 -0.7234 1.2490 5 6 3.5712 -0.7715 1.2110 6 6 4.0230 -1.4730 -0.0719 7 7 3.5093 -0.7426 -1.2376 8 6 2.0410 -0.7231 -1.2482 9 1 1.6648 -1.7461 -1.2549 10 6 1.5566 -0.0021 -2.4798 11 8 2.1284 0.9969 -2.8621 12 7 0.4878 -0.4674 -3.1563 13 6 0.1069 0.1292 -4.3304 14 1 0.5267 1.0836 -4.6123 15 6 -0.8191 -0.4940 -5.1579 16 7 -1.3081 -1.6687 -4.8294 17 14 -1.3692 0.3380 -6.7374 18 1 -0.6750 1.6434 -6.8769 19 1 -1.0324 -0.5276 -7.8961 20 1 -2.8370 0.5595 -6.6950 21 6 -0.2669 -1.6106 -2.6371 22 6 0.1910 -2.8426 -3.2998 23 7 0.5444 -3.7935 -3.8113 24 1 -0.3633 0.4105 -0.9421 25 1 -0.3633 0.6106 0.8265 26 1 -0.3633 -1.0212 0.1156 27 1 1.6778 1.9563 0.8899 28 1 3.1309 1.4416 -0.0005 29 1 1.6778 1.9562 -0.8900 30 1 1.7157 -0.1863 2.1399 31 1 1.6453 -1.7387 1.2696 32 1 3.9678 0.2436 1.2297 33 1 3.9396 -1.3221 2.0766 34 1 5.1121 -1.4963 -0.1089 35 1 3.6376 -2.4925 -0.0833 36 1 3.8720 -1.1301 -2.0957 37 1 -1.9548 -2.1036 -5.4069 38 1 -0.1056 -1.6946 -1.5624 39 1 -1.3289 -1.4649 -2.8348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232786673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:16 Heat of formation + Delta-G solvation = -10.676879 kcal Electronic energy + Delta-G solvation = -21750.085486 eV Core-core repulsion = 18692.523052 eV Total energy + Delta-G solvation = -3057.562434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62224 -39.17429 -37.55451 -36.07546 -34.87205 -33.76757 -32.44827 -29.34047 -28.05809 -27.92385 -26.64848 -24.97313 -22.55594 -21.18615 -19.83234 -19.02272 -18.27677 -18.04762 -17.18411 -16.33527 -16.14648 -15.93128 -15.43721 -14.99826 -14.67331 -14.60815 -14.35744 -14.25894 -13.89295 -13.62153 -13.40993 -13.21166 -13.01766 -12.95437 -12.71440 -12.58347 -12.33810 -12.32128 -12.17099 -12.08886 -11.72577 -11.47617 -11.32169 -11.13444 -11.07170 -10.15855 -9.96780 -9.29481 -8.32418 -5.98447 1.34517 1.42687 1.54292 1.83190 2.02637 2.28156 2.38674 2.93593 3.04054 3.36265 3.62847 3.79566 3.90353 4.05879 4.15072 4.25708 4.29747 4.50915 4.51954 4.65705 4.73906 4.88063 4.92309 4.98348 5.08930 5.09872 5.17050 5.19082 5.26623 5.39593 5.42480 5.44857 5.55619 5.77574 5.90490 6.14834 6.34222 6.44415 7.05984 7.13155 7.37478 7.95365 8.61902 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.007053 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.102779 B = 3968.921002 C = 4285.589931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.049 4.049 3 C -0.124 4.124 4 C -0.105 4.105 5 C -0.116 4.116 6 C 0.056 3.944 7 N -0.679 5.679 8 C 0.093 3.907 9 H 0.048 0.952 10 C 0.465 3.535 11 O -0.591 6.591 12 N -0.462 5.462 13 C -0.321 4.321 14 H 0.085 0.915 15 C -0.002 4.002 16 N -0.905 5.905 17 Si 0.989 3.011 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.223 3.777 22 C 0.268 3.732 23 N -0.524 5.524 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.335 0.665 37 H 0.272 0.728 38 H 0.118 0.882 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 0.241 14.250 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.072 4.072 7 N -0.310 5.310 8 C -0.020 4.020 9 H 0.065 0.935 10 C 0.254 3.746 11 O -0.474 6.474 12 N -0.184 5.184 13 C -0.449 4.449 14 H 0.103 0.897 15 C -0.201 4.201 16 N -0.547 5.547 17 Si 0.814 3.186 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.190 1.190 21 C 0.097 3.903 22 C -0.048 4.048 23 N -0.206 5.206 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.736 -0.137 13.512 13.787 hybrid contribution -0.667 -0.299 -1.740 1.887 sum 2.069 -0.436 11.772 11.960 Atomic orbital electron populations 1.22139 0.93742 1.03032 1.02421 1.20525 0.95574 0.96052 0.92844 1.21706 1.01540 0.94609 1.00312 1.21672 0.95759 1.00499 0.96285 1.21656 0.95783 1.01534 0.96425 1.22089 1.00226 0.94531 0.90361 1.59992 1.05862 1.59081 1.06081 1.21466 0.89642 0.97195 0.93737 0.93470 1.20682 0.80498 0.86804 0.86569 1.90508 1.57995 1.28037 1.70845 1.43831 1.25700 1.27385 1.21456 1.19769 1.23461 1.04595 0.97061 0.89746 1.25837 0.96691 0.96099 1.01505 1.69702 1.31259 1.14773 1.38937 0.84906 0.78510 0.77833 0.77373 1.19765 1.21489 1.18962 1.19401 0.99587 0.76509 0.94804 1.29708 0.90297 0.93513 0.91325 1.80861 1.12581 1.15156 1.12036 0.94125 0.90042 0.90588 0.91815 0.92308 0.95303 0.89460 0.91147 0.91485 0.89136 0.89541 0.95093 0.84736 0.91712 0.86501 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.09 71.98 0.51 -3.49 16 2 C -0.05 -1.35 0.54 -52.13 -0.03 -1.38 16 3 C -0.12 -3.85 7.55 71.98 0.54 -3.30 16 4 C -0.10 -2.11 4.79 30.68 0.15 -1.96 16 5 C -0.12 -2.29 5.74 30.65 0.18 -2.11 16 6 C 0.06 1.33 6.55 86.33 0.57 1.89 16 7 N -0.68 -21.92 5.58 -495.56 -2.77 -24.69 16 8 C 0.09 3.17 1.63 44.19 0.07 3.24 16 9 H 0.05 1.58 5.99 -2.39 -0.01 1.56 16 10 C 0.47 20.83 5.03 87.66 0.44 21.27 16 11 O -0.59 -31.07 14.73 -3.06 -0.05 -31.12 16 12 N -0.46 -21.54 2.27 -645.41 -1.47 -23.01 16 13 C -0.32 -16.84 9.48 84.04 0.80 -16.04 16 14 H 0.08 4.78 7.21 -2.91 -0.02 4.76 16 15 C 0.00 -0.12 5.35 84.93 0.45 0.33 16 16 N -0.90 -44.72 7.99 21.66 0.17 -44.55 16 17 Si 0.99 41.69 29.55 68.60 2.03 43.72 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 C 0.22 8.96 4.08 84.57 0.35 9.30 16 22 C 0.27 12.11 12.88 89.44 1.15 13.26 16 23 N -0.52 -25.44 18.54 20.01 0.37 -25.07 16 24 H 0.04 1.30 6.15 -2.39 -0.01 1.29 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 1.63 6.89 -2.38 -0.02 1.61 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.89 6.01 -2.39 -0.01 1.88 16 29 H 0.03 1.11 6.27 -2.38 -0.01 1.09 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.44 6.58 -2.39 -0.02 1.43 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.34 11.61 8.78 -89.70 -0.79 10.83 16 37 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 38 H 0.12 3.72 3.48 -2.39 -0.01 3.71 16 39 H 0.13 5.59 6.32 -2.39 -0.02 5.57 16 Total: -1.00 -64.13 299.69 3.76 -60.36 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.29 Total: 23.34 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 5.17 Total: 21.01 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -3.69 Total: -117.31 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.05 Total: -31.12 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.13 3.76 -60.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232786673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.687 kcal (2) G-P(sol) polarization free energy of solvation -64.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds