Wall clock time and date at job start Mon Mar 30 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47605 * 2 1 4 4 C 1.53000 * 109.47547 * 185.35776 * 3 2 1 5 5 C 1.50702 * 110.45879 * 308.02460 * 4 3 2 6 6 O 1.21290 * 120.00281 * 120.70956 * 5 4 3 7 7 N 1.34786 * 119.99793 * 300.70735 * 5 4 3 8 8 C 1.37091 * 120.00130 * 177.81655 * 7 5 4 9 9 H 1.07999 * 119.99896 * 1.91903 * 8 7 5 10 10 C 1.38945 * 120.00389 * 181.92234 * 8 7 5 11 11 N 1.31413 * 119.99754 * 31.85867 * 10 8 7 12 12 Si 1.86796 * 120.00281 * 211.86789 * 10 8 7 13 13 H 1.48500 * 109.47436 * 94.99609 * 12 10 8 14 14 H 1.48504 * 109.47093 * 214.99613 * 12 10 8 15 15 H 1.48498 * 109.47045 * 334.98918 * 12 10 8 16 16 C 1.46501 * 119.99721 * 357.81545 * 7 5 4 17 17 C 1.47203 * 109.46982 * 96.79274 * 16 7 5 18 18 N 3.39643 * 76.30435 * 68.85482 * 2 1 3 19 19 C 1.54373 * 110.41291 * 185.60882 * 4 3 2 20 20 C 1.54266 * 105.06247 * 217.36565 * 19 4 3 21 21 C 1.54383 * 105.05481 * 359.97438 * 20 19 4 22 22 N 1.48558 * 104.59634 * 23.85751 * 21 20 19 23 23 H 1.08991 * 109.47141 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46783 * 300.00407 * 1 2 3 25 25 H 1.08996 * 109.46854 * 59.99696 * 1 2 3 26 26 H 1.09001 * 109.46980 * 240.00056 * 2 1 3 27 27 H 1.09004 * 109.47179 * 120.00262 * 2 1 3 28 28 H 1.09000 * 109.47331 * 65.35502 * 3 2 1 29 29 H 1.09005 * 109.46982 * 305.35378 * 3 2 1 30 30 H 0.97005 * 120.00596 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46888 * 216.78858 * 16 7 5 32 32 H 1.09001 * 109.47124 * 336.79092 * 16 7 5 33 33 H 1.08999 * 110.32610 * 98.47022 * 19 4 3 34 34 H 1.09001 * 110.32585 * 336.26197 * 19 4 3 35 35 H 1.08994 * 110.32405 * 118.89268 * 20 19 4 36 36 H 1.08997 * 110.32593 * 241.00515 * 20 19 4 37 37 H 1.09005 * 110.40506 * 142.62792 * 21 20 19 38 38 H 1.08992 * 110.41333 * 264.95203 * 21 20 19 39 39 H 1.00893 * 111.00737 * 80.07055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5642 1.4445 -0.1347 5 6 4.1856 0.5413 0.8993 6 8 4.8735 -0.3953 0.5517 7 7 3.9769 0.7742 2.2104 8 6 4.5050 -0.0733 3.1497 9 1 5.1141 -0.9098 2.8405 10 6 4.2567 0.1440 4.4994 11 7 3.1187 0.6795 4.8801 12 14 5.5406 -0.3248 5.7726 13 1 6.3716 0.8621 6.0980 14 1 4.8640 -0.8078 7.0032 15 1 6.4067 -1.4016 5.2290 16 6 3.1857 1.9330 2.6316 17 6 1.7973 1.5138 2.8834 18 7 0.7258 1.1904 3.0777 19 6 4.1149 2.8800 0.0035 20 6 5.2801 2.9611 -1.0043 21 6 5.3355 1.5675 -1.6661 22 7 3.9647 1.0195 -1.5004 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7572 1.9279 0.9340 29 1 1.6006 1.9832 -0.8382 30 1 2.9453 0.8316 5.8224 31 1 3.6105 2.3504 3.5445 32 1 3.2005 2.6881 1.8456 33 1 4.4785 3.0501 1.0169 34 1 3.3438 3.6075 -0.2500 35 1 5.0807 3.7283 -1.7525 36 1 6.2151 3.1727 -0.4858 37 1 5.5831 1.6586 -2.7238 38 1 6.0638 0.9346 -1.1592 39 1 3.3377 1.3974 -2.1947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233382155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:52 Heat of formation + Delta-G solvation = 1.359066 kcal Electronic energy + Delta-G solvation = -21949.789662 eV Core-core repulsion = 18892.749145 eV Total energy + Delta-G solvation = -3057.040517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76318 -38.63183 -37.59871 -36.06358 -35.40182 -33.79365 -31.07252 -30.81255 -29.02338 -27.00098 -26.38600 -23.65888 -22.53799 -21.58482 -20.35881 -19.79884 -18.03220 -17.42825 -16.94269 -16.87597 -16.09274 -15.91181 -15.60295 -15.28099 -14.82930 -14.61452 -14.41105 -14.27595 -13.82319 -13.48568 -13.37082 -13.17876 -13.02318 -12.84603 -12.81745 -12.52884 -12.35746 -12.23501 -12.13487 -12.01311 -11.83146 -11.51948 -11.40572 -11.32274 -10.97740 -10.23620 -9.97365 -9.39372 -8.45469 -5.84185 1.35953 1.45685 1.56034 1.88641 2.14181 2.32797 2.40767 2.90955 3.05277 3.38793 3.63844 3.68262 3.82954 3.90012 4.09729 4.16059 4.28848 4.37347 4.47064 4.59275 4.66580 4.71704 4.79833 4.84386 4.88167 4.96549 4.98953 5.13042 5.16552 5.21535 5.30725 5.36748 5.45579 5.50426 5.78473 6.05365 6.44375 6.68594 7.13937 7.18270 7.42983 8.05031 8.58055 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.009135 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.630245 B = 3064.549820 C = 3860.880584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.112 4.112 4 C 0.092 3.908 5 C 0.474 3.526 6 O -0.603 6.603 7 N -0.455 5.455 8 C -0.351 4.351 9 H 0.077 0.923 10 C 0.014 3.986 11 N -0.876 5.876 12 Si 0.972 3.028 13 H -0.259 1.259 14 H -0.286 1.286 15 H -0.280 1.280 16 C 0.206 3.794 17 C 0.261 3.739 18 N -0.496 5.496 19 C -0.159 4.159 20 C -0.145 4.145 21 C 0.041 3.959 22 N -0.653 5.653 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.013 0.987 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.275 0.725 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 10.809 -9.706 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.150 4.150 4 C -0.003 4.003 5 C 0.263 3.737 6 O -0.487 6.487 7 N -0.176 5.176 8 C -0.478 4.478 9 H 0.094 0.906 10 C -0.189 4.189 11 N -0.514 5.514 12 Si 0.797 3.203 13 H -0.184 1.184 14 H -0.212 1.212 15 H -0.206 1.206 16 C 0.080 3.920 17 C -0.056 4.056 18 N -0.177 5.177 19 C -0.198 4.198 20 C -0.184 4.184 21 C -0.089 4.089 22 N -0.283 5.283 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.864 9.174 -9.273 13.073 hybrid contribution 0.851 0.029 1.186 1.460 sum -0.013 9.203 -8.087 12.252 Atomic orbital electron populations 1.21712 0.94731 1.01383 1.02161 1.21309 0.96365 0.97041 1.00262 1.22022 0.91564 0.97456 1.03937 1.21808 0.95214 0.93007 0.90240 1.20454 0.83862 0.86760 0.82579 1.90488 1.43343 1.34398 1.80446 1.43757 1.45392 1.23739 1.04762 1.19447 1.30161 1.11630 0.86525 0.90551 1.25673 0.97093 0.97366 0.98771 1.70000 1.19501 1.43849 1.18052 0.85248 0.79018 0.78870 0.77154 1.18416 1.21171 1.20565 1.19577 0.80183 0.88907 1.03364 1.29225 0.94257 0.92556 0.89593 1.80841 1.15859 1.08400 1.12612 1.23318 0.99946 0.95256 1.01302 1.22858 0.98362 0.98460 0.98708 1.22982 0.91145 0.93413 1.01324 1.62744 1.04114 1.60143 1.01264 0.93630 0.93728 0.90197 0.91740 0.96853 0.91027 0.87553 0.91413 0.87044 0.84593 0.90504 0.86986 0.88281 0.91390 0.88522 0.93574 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.79 16 2 C -0.11 -4.09 5.11 30.59 0.16 -3.93 16 3 C -0.11 -3.37 3.63 30.59 0.11 -3.26 16 4 C 0.09 3.00 0.43 2.93 0.00 3.00 16 5 C 0.47 21.64 4.74 87.66 0.42 22.05 16 6 O -0.60 -33.25 15.10 -3.06 -0.05 -33.30 16 7 N -0.46 -21.49 2.59 -645.40 -1.67 -23.16 16 8 C -0.35 -18.92 9.37 84.04 0.79 -18.13 16 9 H 0.08 4.58 7.33 -2.91 -0.02 4.56 16 10 C 0.01 0.72 4.82 84.92 0.41 1.13 16 11 N -0.88 -43.97 9.15 21.66 0.20 -43.77 16 12 Si 0.97 40.98 29.65 68.60 2.03 43.01 16 13 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 14 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 C 0.21 8.10 4.17 84.57 0.35 8.45 16 17 C 0.26 11.28 9.74 89.44 0.87 12.15 16 18 N -0.50 -22.86 17.64 20.01 0.35 -22.50 16 19 C -0.16 -3.85 4.70 31.49 0.15 -3.70 16 20 C -0.14 -3.12 7.00 31.49 0.22 -2.90 16 21 C 0.04 1.11 7.01 86.45 0.61 1.72 16 22 N -0.65 -19.64 6.42 -461.73 -2.96 -22.60 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 1.55 7.22 -2.38 -0.02 1.53 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 27 H 0.01 0.60 7.09 -2.38 -0.02 0.59 16 28 H 0.07 2.28 3.46 -2.39 -0.01 2.28 16 29 H 0.11 2.34 7.99 -2.38 -0.02 2.32 16 30 H 0.28 13.25 8.31 -92.70 -0.77 12.48 16 31 H 0.11 4.49 6.56 -2.39 -0.02 4.48 16 32 H 0.14 4.09 3.31 -2.39 -0.01 4.08 16 33 H 0.08 2.01 5.78 -2.39 -0.01 2.00 16 34 H 0.11 1.90 7.86 -2.39 -0.02 1.88 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.05 1.65 7.33 -2.39 -0.02 1.63 16 39 H 0.35 8.01 8.53 -89.70 -0.77 7.24 16 Total: -1.00 -69.16 301.85 3.01 -66.15 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.31 Total: 23.39 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 4.79 Total: 12.78 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -4.08 Total: -112.03 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.05 Total: -33.30 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -69.16 3.01 -66.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233382155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.511 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds