Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47561 * 9.12478 * 3 2 1 5 5 C 1.37092 * 119.99882 * 263.46092 * 4 3 2 6 6 H 1.08006 * 119.99848 * 189.95133 * 5 4 3 7 7 C 1.38952 * 120.00436 * 9.95175 * 5 4 3 8 8 N 1.31407 * 119.99665 * 24.85401 * 7 5 4 9 9 Si 1.86796 * 120.00334 * 204.85787 * 7 5 4 10 10 H 1.48504 * 109.47236 * 59.99454 * 9 7 5 11 11 H 1.48504 * 109.47295 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46870 * 299.99765 * 9 7 5 13 13 C 1.34781 * 119.99875 * 83.73382 * 4 3 2 14 14 O 1.21292 * 120.00014 * 183.96060 * 13 4 3 15 15 C 1.50697 * 120.00210 * 3.95855 * 13 4 3 16 16 H 1.09004 * 109.46847 * 23.41632 * 15 13 4 17 17 C 1.52997 * 109.47046 * 143.41511 * 15 13 4 18 18 C 1.53006 * 109.46984 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47277 * 300.00583 * 18 17 15 20 20 H 1.08996 * 109.46677 * 299.99600 * 19 18 17 21 21 C 1.52994 * 109.46827 * 179.97438 * 19 18 17 22 22 N 1.46904 * 109.46980 * 175.00044 * 21 19 18 23 23 C 1.52991 * 109.47114 * 59.99844 * 19 18 17 24 24 C 1.52997 * 109.47244 * 263.42314 * 15 13 4 25 25 H 1.09002 * 109.46742 * 249.11832 * 3 2 1 26 26 H 1.09006 * 109.46693 * 129.13048 * 3 2 1 27 27 H 0.97004 * 120.00045 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47335 * 299.99929 * 17 15 13 29 29 H 1.09001 * 109.46831 * 60.00671 * 17 15 13 30 30 H 1.09004 * 109.46779 * 60.00201 * 18 17 15 31 31 H 1.08998 * 109.47131 * 180.02562 * 18 17 15 32 32 H 1.08998 * 109.47343 * 294.99774 * 21 19 18 33 33 H 1.08994 * 109.47518 * 54.99848 * 21 19 18 34 34 H 1.00901 * 111.00203 * 179.97438 * 22 21 19 35 35 H 1.00905 * 110.99703 * 303.94665 * 22 21 19 36 36 H 1.09004 * 109.47482 * 60.00051 * 23 19 18 37 37 H 1.09000 * 109.47171 * 180.02562 * 23 19 18 38 38 H 1.09004 * 109.46642 * 299.99444 * 24 15 13 39 39 H 1.08998 * 109.47541 * 59.99581 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0971 -1.3628 -0.2190 5 6 3.4534 -2.1432 0.8503 6 1 3.9620 -3.0821 0.6879 7 6 3.1603 -1.7264 2.1430 8 7 2.1642 -0.8962 2.3556 9 14 4.1822 -2.3463 3.5785 10 1 5.5997 -1.9476 3.3858 11 1 3.6701 -1.7569 4.8417 12 1 4.0896 -3.8268 3.6493 13 6 3.2019 -1.8479 -1.4721 14 8 3.5379 -2.9997 -1.6504 15 6 2.9015 -0.9595 -2.6517 16 1 3.0272 0.0838 -2.3621 17 6 3.8610 -1.2902 -3.7966 18 6 3.5555 -0.3886 -4.9945 19 6 2.1145 -0.6209 -5.4534 20 1 1.9891 -1.6642 -5.7426 21 6 1.8090 0.2812 -6.6507 22 7 0.4682 -0.0266 -7.1661 23 6 1.1551 -0.2902 -4.3084 24 6 1.4605 -1.1911 -3.1107 25 1 2.9712 0.3671 0.9602 26 1 2.9710 0.6494 -0.7972 27 1 1.9598 -0.6049 3.2580 28 1 4.8875 -1.1251 -3.4696 29 1 3.7351 -2.3335 -4.0862 30 1 3.6810 0.6548 -4.7052 31 1 4.2388 -0.6245 -5.8103 32 1 1.8475 1.3248 -6.3387 33 1 2.5475 0.1086 -7.4335 34 1 0.2424 0.5568 -7.9578 35 1 0.3872 -1.0043 -7.4022 36 1 1.2806 0.7533 -4.0191 37 1 0.1286 -0.4561 -4.6352 38 1 1.3347 -2.2344 -3.4003 39 1 0.7769 -0.9556 -2.2950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253137936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = -17.501738 kcal Electronic energy + Delta-G solvation = -20788.267563 eV Core-core repulsion = 17730.409181 eV Total energy + Delta-G solvation = -3057.858382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60914 -37.79938 -35.77911 -34.58895 -34.12866 -31.86841 -30.54804 -30.14987 -27.45488 -25.60768 -24.12039 -22.34726 -21.38127 -19.86120 -18.75410 -17.86399 -16.45884 -16.24685 -16.00339 -14.90006 -14.77035 -14.52056 -14.24400 -14.01132 -13.70551 -13.25193 -13.15750 -12.86522 -12.30314 -12.07503 -12.06459 -11.86384 -11.67359 -11.46266 -11.27716 -11.13066 -10.86928 -10.76542 -10.56038 -10.46415 -10.36075 -10.25782 -9.85802 -9.75704 -9.19974 -8.77549 -8.40845 -8.05185 -6.49513 -3.92180 3.13383 3.23271 3.25968 3.57162 3.80188 3.99549 4.12522 4.42142 4.67422 4.85335 4.90754 4.97712 5.08538 5.23720 5.33625 5.48446 5.53972 5.64588 5.67317 5.77933 5.78600 5.82683 5.88842 6.02040 6.23531 6.28259 6.36343 6.39964 6.51969 6.58265 6.63600 6.70149 6.79607 6.99639 7.28367 7.49238 7.92247 8.32392 8.71471 9.04007 9.24688 9.80222 10.55855 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.005304 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.472192 B = 5278.137644 C = 5831.367913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.245 3.755 3 C 0.211 3.789 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.110 0.890 7 C 0.031 3.969 8 N -0.877 5.877 9 Si 0.924 3.076 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.458 3.542 14 O -0.576 6.576 15 C -0.102 4.102 16 H 0.079 0.921 17 C -0.097 4.097 18 C -0.112 4.112 19 C -0.086 4.086 20 H 0.067 0.933 21 C 0.066 3.934 22 N -0.850 5.850 23 C -0.099 4.099 24 C -0.109 4.109 25 H 0.138 0.862 26 H 0.084 0.916 27 H 0.273 0.727 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.337 0.663 35 H 0.339 0.661 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 6.043 -13.132 14.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.084 3.916 4 N -0.164 5.164 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.516 5.516 9 Si 0.751 3.249 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.247 3.753 14 O -0.459 6.459 15 C -0.123 4.123 16 H 0.097 0.903 17 C -0.135 4.135 18 C -0.150 4.150 19 C -0.105 4.105 20 H 0.086 0.914 21 C -0.065 4.065 22 N -0.379 5.379 23 C -0.137 4.137 24 C -0.147 4.147 25 H 0.156 0.844 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.997 5.779 -12.302 13.628 hybrid contribution 1.200 -0.494 0.142 1.306 sum 2.198 5.285 -12.160 13.440 Atomic orbital electron populations 1.80920 1.13553 1.08783 1.11955 1.29457 0.95463 0.92187 0.90170 1.19005 0.81471 0.86358 1.04785 1.43719 1.56089 1.11114 1.05435 1.19724 1.35485 1.05622 0.83245 0.87279 1.25209 0.95661 0.97491 0.98836 1.69975 1.23918 1.34723 1.22991 0.86018 0.80145 0.79222 0.79538 1.19742 1.21014 1.19868 1.20120 0.83318 0.88211 0.83655 1.90518 1.51893 1.18511 1.84982 1.21263 0.96633 0.99717 0.94713 0.90250 1.21314 0.98387 1.00288 0.93523 1.21572 0.95438 1.00134 0.97830 1.21195 0.95325 0.99222 0.94749 0.91417 1.21869 0.88572 1.00132 0.95907 1.58677 1.29022 1.09959 1.40261 1.21427 0.99351 0.99121 0.93769 1.21473 0.94795 1.00423 0.97992 0.84427 0.89817 0.91636 0.91878 0.91032 0.91955 0.92294 0.91116 0.95912 0.85072 0.84838 0.92409 0.91041 0.91747 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.20 18.33 42.16 0.77 -10.43 16 2 C 0.25 5.46 12.48 -20.76 -0.26 5.20 16 3 C 0.21 4.28 4.91 -6.83 -0.03 4.25 16 4 N -0.44 -10.48 2.61 -117.94 -0.31 -10.79 16 5 C -0.31 -8.18 9.40 -14.94 -0.14 -8.32 16 6 H 0.11 3.02 7.34 -52.48 -0.39 2.63 16 7 C 0.03 0.77 4.88 -17.47 -0.09 0.69 16 8 N -0.88 -22.05 9.53 55.50 0.53 -21.52 16 9 Si 0.92 19.65 29.62 -169.99 -5.03 14.62 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.46 10.46 6.53 -10.99 -0.07 10.38 16 14 O -0.58 -15.23 15.92 5.55 0.09 -15.14 16 15 C -0.10 -1.77 1.98 -91.78 -0.18 -1.95 16 16 H 0.08 1.24 5.75 -51.93 -0.30 0.94 16 17 C -0.10 -1.47 4.88 -26.73 -0.13 -1.60 16 18 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 19 C -0.09 -1.01 2.33 -90.63 -0.21 -1.22 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 21 C 0.07 0.64 6.17 -3.83 -0.02 0.62 16 22 N -0.85 -7.88 9.08 -10.37 -0.09 -7.97 16 23 C -0.10 -1.37 5.09 -26.76 -0.14 -1.51 16 24 C -0.11 -1.87 5.18 -26.76 -0.14 -2.01 16 25 H 0.14 2.88 5.93 -51.93 -0.31 2.58 16 26 H 0.08 1.33 5.93 -51.93 -0.31 1.02 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.34 2.47 9.08 -39.29 -0.36 2.12 16 35 H 0.34 2.88 8.99 -39.29 -0.35 2.53 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.26 6.24 -51.93 -0.32 0.93 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -30.32 313.76 -6.53 -36.85 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.66 Total: 6.59 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.55 Total: 3.07 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.90 Total: -50.71 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.32 -6.53 -36.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253137936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.346 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds