Wall clock time and date at job start Mon Mar 30 2020 04:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47561 * 9.12478 * 3 2 1 5 5 C 1.37092 * 119.99882 * 263.46092 * 4 3 2 6 6 H 1.08006 * 119.99848 * 189.95133 * 5 4 3 7 7 C 1.38952 * 120.00436 * 9.95175 * 5 4 3 8 8 N 1.31407 * 119.99665 * 24.85401 * 7 5 4 9 9 Si 1.86796 * 120.00334 * 204.85787 * 7 5 4 10 10 H 1.48504 * 109.47236 * 59.99454 * 9 7 5 11 11 H 1.48504 * 109.47295 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46870 * 299.99765 * 9 7 5 13 13 C 1.34781 * 119.99875 * 83.73382 * 4 3 2 14 14 O 1.21292 * 120.00014 * 183.96060 * 13 4 3 15 15 C 1.50697 * 120.00210 * 3.95855 * 13 4 3 16 16 H 1.09004 * 109.46847 * 23.41632 * 15 13 4 17 17 C 1.52997 * 109.47046 * 143.41511 * 15 13 4 18 18 C 1.53006 * 109.46984 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47277 * 300.00583 * 18 17 15 20 20 H 1.08996 * 109.46677 * 299.99600 * 19 18 17 21 21 C 1.52994 * 109.46827 * 179.97438 * 19 18 17 22 22 N 1.46904 * 109.46980 * 175.00044 * 21 19 18 23 23 C 1.52991 * 109.47114 * 59.99844 * 19 18 17 24 24 C 1.52997 * 109.47244 * 263.42314 * 15 13 4 25 25 H 1.09002 * 109.46742 * 249.11832 * 3 2 1 26 26 H 1.09006 * 109.46693 * 129.13048 * 3 2 1 27 27 H 0.97004 * 120.00045 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47335 * 299.99929 * 17 15 13 29 29 H 1.09001 * 109.46831 * 60.00671 * 17 15 13 30 30 H 1.09004 * 109.46779 * 60.00201 * 18 17 15 31 31 H 1.08998 * 109.47131 * 180.02562 * 18 17 15 32 32 H 1.08998 * 109.47343 * 294.99774 * 21 19 18 33 33 H 1.08994 * 109.47518 * 54.99848 * 21 19 18 34 34 H 1.00901 * 111.00203 * 179.97438 * 22 21 19 35 35 H 1.00905 * 110.99703 * 303.94665 * 22 21 19 36 36 H 1.09004 * 109.47482 * 60.00051 * 23 19 18 37 37 H 1.09000 * 109.47171 * 180.02562 * 23 19 18 38 38 H 1.09004 * 109.46642 * 299.99444 * 24 15 13 39 39 H 1.08998 * 109.47541 * 59.99581 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0971 -1.3628 -0.2190 5 6 3.4534 -2.1432 0.8503 6 1 3.9620 -3.0821 0.6879 7 6 3.1603 -1.7264 2.1430 8 7 2.1642 -0.8962 2.3556 9 14 4.1822 -2.3463 3.5785 10 1 5.5997 -1.9476 3.3858 11 1 3.6701 -1.7569 4.8417 12 1 4.0896 -3.8268 3.6493 13 6 3.2019 -1.8479 -1.4721 14 8 3.5379 -2.9997 -1.6504 15 6 2.9015 -0.9595 -2.6517 16 1 3.0272 0.0838 -2.3621 17 6 3.8610 -1.2902 -3.7966 18 6 3.5555 -0.3886 -4.9945 19 6 2.1145 -0.6209 -5.4534 20 1 1.9891 -1.6642 -5.7426 21 6 1.8090 0.2812 -6.6507 22 7 0.4682 -0.0266 -7.1661 23 6 1.1551 -0.2902 -4.3084 24 6 1.4605 -1.1911 -3.1107 25 1 2.9712 0.3671 0.9602 26 1 2.9710 0.6494 -0.7972 27 1 1.9598 -0.6049 3.2580 28 1 4.8875 -1.1251 -3.4696 29 1 3.7351 -2.3335 -4.0862 30 1 3.6810 0.6548 -4.7052 31 1 4.2388 -0.6245 -5.8103 32 1 1.8475 1.3248 -6.3387 33 1 2.5475 0.1086 -7.4335 34 1 0.2424 0.5568 -7.9578 35 1 0.3872 -1.0043 -7.4022 36 1 1.2806 0.7533 -4.0191 37 1 0.1286 -0.4561 -4.6352 38 1 1.3347 -2.2344 -3.4003 39 1 0.7769 -0.9556 -2.2950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253137936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:24 Heat of formation + Delta-G solvation = -37.721619 kcal Electronic energy + Delta-G solvation = -20789.144363 eV Core-core repulsion = 17730.409181 eV Total energy + Delta-G solvation = -3058.735182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17403 -39.11907 -37.59791 -36.25449 -35.33677 -33.73064 -31.73320 -31.30603 -29.20945 -27.16044 -25.46849 -23.53152 -22.60629 -20.99545 -20.33496 -19.71440 -18.17587 -17.92625 -16.98211 -16.57823 -16.03816 -15.69060 -15.45661 -15.24287 -15.10838 -14.91167 -14.64054 -14.48991 -13.82303 -13.54276 -13.49858 -13.16472 -13.08446 -13.02031 -12.89926 -12.65330 -12.32772 -12.29375 -12.12180 -11.98795 -11.75501 -11.44716 -11.18746 -11.08363 -10.92423 -10.21479 -9.95954 -9.46114 -8.41304 -5.91477 1.40130 1.48287 1.57417 1.79542 2.03673 2.22860 2.34852 2.96364 3.11365 3.54019 3.67011 3.77325 3.79684 4.02265 4.16313 4.21010 4.33266 4.44412 4.57949 4.62857 4.64053 4.73493 4.83830 4.89407 4.96921 4.97962 5.13062 5.20252 5.25424 5.35849 5.38590 5.48998 5.51750 5.63664 6.02527 6.33939 6.41556 6.68983 6.94271 7.12747 7.37512 7.95491 8.61688 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.005304 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.472192 B = 5278.137644 C = 5831.367913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.255 3.745 3 C 0.212 3.788 4 N -0.455 5.455 5 C -0.348 4.348 6 H 0.081 0.919 7 C 0.008 3.992 8 N -0.890 5.890 9 Si 0.985 3.015 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.284 1.284 13 C 0.448 3.552 14 O -0.623 6.623 15 C -0.092 4.092 16 H 0.106 0.894 17 C -0.094 4.094 18 C -0.102 4.102 19 C -0.083 4.083 20 H 0.058 0.942 21 C 0.072 3.928 22 N -0.862 5.862 23 C -0.089 4.089 24 C -0.103 4.103 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.277 0.723 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.349 0.651 35 H 0.343 0.657 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 8.073 -14.189 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.062 4.062 3 C 0.085 3.915 4 N -0.174 5.174 5 C -0.475 4.475 6 H 0.099 0.901 7 C -0.195 4.195 8 N -0.528 5.528 9 Si 0.809 3.191 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.210 1.210 13 C 0.239 3.761 14 O -0.509 6.509 15 C -0.113 4.113 16 H 0.124 0.876 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.102 4.102 20 H 0.076 0.924 21 C -0.058 4.058 22 N -0.393 5.393 23 C -0.126 4.126 24 C -0.141 4.141 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.801 7.846 -13.370 15.606 hybrid contribution 0.900 -1.194 0.498 1.576 sum 2.701 6.652 -12.872 14.738 Atomic orbital electron populations 1.80915 1.14545 1.09690 1.13106 1.29842 0.95849 0.91299 0.89221 1.19289 0.80185 0.85405 1.06587 1.43908 1.56003 1.12178 1.05295 1.19617 1.37129 1.05876 0.84877 0.90127 1.25835 0.95927 0.97422 1.00288 1.70046 1.24142 1.35007 1.23634 0.85126 0.79238 0.77915 0.76832 1.18561 1.20072 1.21000 1.21150 0.81819 0.88384 0.84745 1.90479 1.53715 1.20871 1.85804 1.21288 0.97216 0.99660 0.93142 0.87617 1.21304 0.97837 0.99913 0.94155 1.21529 0.95634 1.00184 0.96665 1.21155 0.94847 0.99342 0.94826 0.92396 1.21768 0.89207 0.99631 0.95233 1.58661 1.28924 1.10553 1.41148 1.21347 0.99705 0.98691 0.92900 1.21410 0.94056 0.99986 0.98686 0.84801 0.84780 0.91336 0.91656 0.93431 0.89983 0.90135 0.90593 0.94332 0.83749 0.84493 0.91216 0.91611 0.94040 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.76 18.33 20.01 0.37 -23.39 16 2 C 0.26 11.22 12.48 89.44 1.12 12.34 16 3 C 0.21 8.34 4.91 84.57 0.42 8.76 16 4 N -0.45 -21.66 2.61 -645.42 -1.68 -23.34 16 5 C -0.35 -18.54 9.40 84.04 0.79 -17.75 16 6 H 0.08 4.68 7.34 -2.91 -0.02 4.65 16 7 C 0.01 0.37 4.88 84.93 0.41 0.78 16 8 N -0.89 -44.38 9.53 21.66 0.21 -44.17 16 9 Si 0.98 40.19 29.62 68.60 2.03 42.22 16 10 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 11 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.45 20.81 6.53 87.66 0.57 21.38 16 14 O -0.62 -34.30 15.92 -3.07 -0.05 -34.35 16 15 C -0.09 -3.12 1.98 -11.54 -0.02 -3.14 16 16 H 0.11 2.98 5.75 -2.38 -0.01 2.97 16 17 C -0.09 -2.73 4.88 30.60 0.15 -2.58 16 18 C -0.10 -2.05 5.20 30.60 0.16 -1.90 16 19 C -0.08 -1.74 2.33 -10.80 -0.03 -1.76 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 C 0.07 1.16 6.17 86.30 0.53 1.70 16 22 N -0.86 -13.82 9.08 -186.73 -1.70 -15.51 16 23 C -0.09 -2.30 5.09 30.58 0.16 -2.15 16 24 C -0.10 -3.53 5.18 30.58 0.16 -3.37 16 25 H 0.13 5.45 5.93 -2.39 -0.01 5.44 16 26 H 0.13 3.85 5.93 -2.38 -0.01 3.84 16 27 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.60 7.86 -2.39 -0.02 1.58 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.35 4.19 9.08 -89.69 -0.81 3.38 16 35 H 0.34 5.14 8.99 -89.69 -0.81 4.34 16 36 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.07 1.80 7.75 -2.39 -0.02 1.78 16 38 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.04 1.53 6.24 -2.39 -0.01 1.51 16 Total: -1.00 -67.55 313.76 3.05 -64.50 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.54 Total: 21.73 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 4.42 Total: 12.31 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -2.80 Total: -106.41 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.05 Total: -34.35 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -67.55 3.05 -64.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253137936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.775 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds