Wall clock time and date at job start Mon Mar 30 2020 04:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47200 * 109.44901 * 2 1 4 4 N 2.60796 * 109.44903 * 0.02562 * 2 1 3 5 5 C 1.53039 * 109.45999 * 240.03682 * 2 1 3 6 6 C 1.53187 * 109.31405 * 178.61560 * 5 2 1 7 7 N 1.46923 * 108.77892 * 54.63350 * 6 5 2 8 8 C 1.34778 * 120.63516 * 126.36791 * 7 6 5 9 9 O 1.21582 * 120.00170 * 185.22679 * 8 7 6 10 10 N 1.34774 * 119.99561 * 5.23034 * 8 7 6 11 11 C 1.46505 * 119.99886 * 175.01708 * 10 8 7 12 12 C 1.53001 * 109.47272 * 179.97438 * 11 10 8 13 13 C 1.50694 * 109.47317 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00033 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00144 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00016 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46854 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46978 * 119.99650 * 17 15 13 20 20 H 1.48508 * 109.46912 * 239.99677 * 17 15 13 21 21 C 1.46926 * 118.73569 * 306.64699 * 7 6 5 22 22 C 1.52758 * 109.01204 * 53.30984 * 21 7 6 23 23 H 1.09002 * 109.47304 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47197 * 299.96082 * 1 2 3 25 25 H 1.09000 * 109.47437 * 59.96460 * 1 2 3 26 26 H 1.08998 * 109.50233 * 58.65884 * 5 2 1 27 27 H 1.09002 * 109.52229 * 298.58177 * 5 2 1 28 28 H 1.09000 * 109.58979 * 294.84647 * 6 5 2 29 29 H 1.09007 * 109.70510 * 174.48961 * 6 5 2 30 30 H 0.97005 * 120.00650 * 355.01541 * 10 8 7 31 31 H 1.08994 * 109.47234 * 60.00009 * 11 10 8 32 32 H 1.09004 * 109.46998 * 299.99748 * 11 10 8 33 33 H 1.08995 * 109.47194 * 300.00175 * 12 11 10 34 34 H 1.08999 * 109.47165 * 59.99635 * 12 11 10 35 35 H 0.96996 * 120.00118 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.58752 * 173.14195 * 21 7 6 37 37 H 1.09007 * 109.58494 * 293.56431 * 21 7 6 38 38 H 1.09003 * 109.56387 * 185.55648 * 22 21 7 39 39 H 1.08994 * 109.38805 * 65.51003 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0201 1.3880 0.0000 4 7 2.3983 2.4591 0.0011 5 6 2.0398 -0.7207 -1.2501 6 6 3.5713 -0.6885 -1.2643 7 7 4.0678 -1.2488 -0.0001 8 6 4.9614 -2.2578 -0.0001 9 8 5.2928 -2.7764 1.0485 10 7 5.4875 -2.6919 -1.1625 11 6 6.5384 -3.7127 -1.1549 12 6 6.9567 -4.0248 -2.5932 13 6 8.0380 -5.0743 -2.5853 14 1 8.3914 -5.4787 -1.6483 15 6 8.5764 -5.5183 -3.7745 16 7 8.1459 -5.0263 -4.9156 17 14 9.9164 -6.8198 -3.7648 18 1 10.2204 -7.2068 -2.3637 19 1 9.4535 -8.0124 -4.5189 20 1 11.1408 -6.2744 -4.4041 21 6 3.5671 -0.6924 1.2641 22 6 2.0398 -0.7208 1.2501 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5132 0.8904 25 1 -0.3634 0.5144 -0.8896 26 1 1.6572 -0.2207 -2.1399 27 1 1.6977 -1.7556 -1.2389 28 1 3.9143 0.3409 -1.3674 29 1 3.9437 -1.2830 -2.0987 30 1 5.1705 -2.3285 -2.0042 31 1 6.1609 -4.6192 -0.6819 32 1 7.3994 -3.3436 -0.5977 33 1 6.0955 -4.3940 -3.1500 34 1 7.3340 -3.1183 -3.0666 35 1 8.5244 -5.3389 -5.7521 36 1 3.9346 -1.2908 2.0978 37 1 3.9097 0.3369 1.3715 38 1 1.6572 -0.2208 2.1399 39 1 1.6973 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273427998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:47 Heat of formation + Delta-G solvation = -13.586642 kcal Electronic energy + Delta-G solvation = -19926.274438 eV Core-core repulsion = 16868.585826 eV Total energy + Delta-G solvation = -3057.688611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60705 -38.70281 -36.00999 -34.91964 -34.10795 -32.85606 -31.48260 -29.69538 -28.35827 -24.92124 -24.00487 -23.54143 -22.41456 -21.02135 -19.79358 -18.21650 -16.50599 -16.42905 -15.86018 -15.45040 -15.30092 -14.86302 -14.47487 -14.29530 -14.09094 -13.95942 -13.60523 -13.07587 -12.98075 -12.68483 -12.50122 -12.35326 -12.29463 -12.21908 -11.76737 -11.58927 -11.21144 -11.05255 -10.98847 -10.79998 -10.61178 -10.33303 -9.90005 -9.55017 -9.24823 -8.78991 -8.47269 -8.22039 -6.09434 -4.11843 2.50528 2.52660 2.82592 3.28704 3.36409 3.41742 3.43902 3.57614 4.14187 4.23537 4.35707 4.41584 4.46893 4.72202 4.96543 5.05156 5.16362 5.19390 5.27953 5.30182 5.33953 5.48451 5.52124 5.67232 5.69217 5.72301 5.85394 6.25134 6.39782 6.52942 6.77077 6.98328 7.12810 7.29940 7.55376 7.62772 7.89835 8.23663 8.35280 8.91279 8.96646 9.53044 11.02299 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038502 B = 0.003507 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.069680 B = 7983.232224 C = 8267.128849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.036 3.964 3 C 0.216 3.784 4 N -0.433 5.433 5 C -0.123 4.123 6 C 0.106 3.894 7 N -0.634 5.634 8 C 0.704 3.296 9 O -0.594 6.594 10 N -0.738 5.738 11 C 0.139 3.861 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.126 3.874 22 C -0.123 4.123 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.392 0.608 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.261 0.739 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 9.458 7.591 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 C -0.102 4.102 4 N -0.108 5.108 5 C -0.163 4.163 6 C -0.018 4.018 7 N -0.374 5.374 8 C 0.406 3.594 9 O -0.473 6.473 10 N -0.394 5.394 11 C 0.016 3.984 12 C -0.025 4.025 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.002 3.998 22 C -0.162 4.162 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.228 0.772 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.304 10.673 8.171 21.131 hybrid contribution 0.435 -0.789 -0.667 1.121 sum -15.870 9.884 7.504 20.146 Atomic orbital electron populations 1.21881 0.91068 1.03809 1.03109 1.18376 0.96710 0.83200 0.98462 1.29063 0.93219 0.94606 0.93348 1.81236 1.08813 1.12556 1.08153 1.22076 0.95880 1.02125 0.96186 1.21643 0.93557 0.99559 0.87014 1.47240 1.46332 1.37393 1.06388 1.15938 0.79069 0.79548 0.84882 1.90876 1.65413 1.59935 1.31050 1.45719 1.42311 1.44914 1.06426 1.21610 0.87231 0.88340 1.01206 1.19327 0.96899 0.97304 0.88959 1.21088 1.19968 1.21900 0.92873 0.92151 1.24994 0.97044 0.96781 0.95491 1.69961 1.42797 1.43189 0.97407 0.86461 0.81545 0.81335 0.78254 1.19554 1.20941 1.20969 1.21326 0.92454 0.98752 0.87279 1.22024 0.96433 1.01892 0.95884 0.90202 0.91576 0.91538 0.89568 0.88823 0.91718 0.89174 0.77226 0.92627 0.92846 0.95966 0.96029 0.92924 0.87970 0.92380 0.89756 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 8.43 37.16 0.31 -0.30 16 2 C 0.04 0.24 0.72 -157.25 -0.11 0.13 16 3 C 0.22 2.07 11.43 -20.76 -0.24 1.84 16 4 N -0.43 -5.41 18.54 42.15 0.78 -4.63 16 5 C -0.12 -0.84 4.88 -26.61 -0.13 -0.97 16 6 C 0.11 1.05 6.04 -3.71 -0.02 1.02 16 7 N -0.63 -8.12 2.98 -178.76 -0.53 -8.65 16 8 C 0.70 12.21 8.30 -86.92 -0.72 11.49 16 9 O -0.59 -12.50 15.77 5.29 0.08 -12.42 16 10 N -0.74 -13.00 5.47 -65.22 -0.36 -13.36 16 11 C 0.14 2.96 5.62 -4.04 -0.02 2.94 16 12 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 13 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.13 1.36 6.07 -3.93 -0.02 1.34 16 22 C -0.12 -0.88 4.87 -26.83 -0.13 -1.01 16 23 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.67 7.38 -51.93 -0.38 0.28 16 29 H 0.09 0.87 5.64 -51.93 -0.29 0.57 16 30 H 0.39 5.97 5.96 -40.82 -0.24 5.73 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.10 1.26 7.00 -51.93 -0.36 0.90 16 37 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -33.50 321.86 -6.96 -40.45 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.86 Total: -0.83 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.64 Total: 3.52 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.63 Total: -51.84 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.50 -6.96 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273427998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.867 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds