Wall clock time and date at job start Mon Mar 30 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47200 * 109.44901 * 2 1 4 4 N 2.60796 * 109.44903 * 0.02562 * 2 1 3 5 5 C 1.53039 * 109.45999 * 240.03682 * 2 1 3 6 6 C 1.53187 * 109.31405 * 178.61560 * 5 2 1 7 7 N 1.46923 * 108.77892 * 54.63350 * 6 5 2 8 8 C 1.34778 * 120.63516 * 126.36791 * 7 6 5 9 9 O 1.21582 * 120.00170 * 185.22679 * 8 7 6 10 10 N 1.34774 * 119.99561 * 5.23034 * 8 7 6 11 11 C 1.46505 * 119.99886 * 175.01708 * 10 8 7 12 12 C 1.53001 * 109.47272 * 179.97438 * 11 10 8 13 13 C 1.50694 * 109.47317 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00033 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00144 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00016 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46854 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46978 * 119.99650 * 17 15 13 20 20 H 1.48508 * 109.46912 * 239.99677 * 17 15 13 21 21 C 1.46926 * 118.73569 * 306.64699 * 7 6 5 22 22 C 1.52758 * 109.01204 * 53.30984 * 21 7 6 23 23 H 1.09002 * 109.47304 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47197 * 299.96082 * 1 2 3 25 25 H 1.09000 * 109.47437 * 59.96460 * 1 2 3 26 26 H 1.08998 * 109.50233 * 58.65884 * 5 2 1 27 27 H 1.09002 * 109.52229 * 298.58177 * 5 2 1 28 28 H 1.09000 * 109.58979 * 294.84647 * 6 5 2 29 29 H 1.09007 * 109.70510 * 174.48961 * 6 5 2 30 30 H 0.97005 * 120.00650 * 355.01541 * 10 8 7 31 31 H 1.08994 * 109.47234 * 60.00009 * 11 10 8 32 32 H 1.09004 * 109.46998 * 299.99748 * 11 10 8 33 33 H 1.08995 * 109.47194 * 300.00175 * 12 11 10 34 34 H 1.08999 * 109.47165 * 59.99635 * 12 11 10 35 35 H 0.96996 * 120.00118 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.58752 * 173.14195 * 21 7 6 37 37 H 1.09007 * 109.58494 * 293.56431 * 21 7 6 38 38 H 1.09003 * 109.56387 * 185.55648 * 22 21 7 39 39 H 1.08994 * 109.38805 * 65.51003 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0201 1.3880 0.0000 4 7 2.3983 2.4591 0.0011 5 6 2.0398 -0.7207 -1.2501 6 6 3.5713 -0.6885 -1.2643 7 7 4.0678 -1.2488 -0.0001 8 6 4.9614 -2.2578 -0.0001 9 8 5.2928 -2.7764 1.0485 10 7 5.4875 -2.6919 -1.1625 11 6 6.5384 -3.7127 -1.1549 12 6 6.9567 -4.0248 -2.5932 13 6 8.0380 -5.0743 -2.5853 14 1 8.3914 -5.4787 -1.6483 15 6 8.5764 -5.5183 -3.7745 16 7 8.1459 -5.0263 -4.9156 17 14 9.9164 -6.8198 -3.7648 18 1 10.2204 -7.2068 -2.3637 19 1 9.4535 -8.0124 -4.5189 20 1 11.1408 -6.2744 -4.4041 21 6 3.5671 -0.6924 1.2641 22 6 2.0398 -0.7208 1.2501 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5132 0.8904 25 1 -0.3634 0.5144 -0.8896 26 1 1.6572 -0.2207 -2.1399 27 1 1.6977 -1.7556 -1.2389 28 1 3.9143 0.3409 -1.3674 29 1 3.9437 -1.2830 -2.0987 30 1 5.1705 -2.3285 -2.0042 31 1 6.1609 -4.6192 -0.6819 32 1 7.3994 -3.3436 -0.5977 33 1 6.0955 -4.3940 -3.1500 34 1 7.3340 -3.1183 -3.0666 35 1 8.5244 -5.3389 -5.7521 36 1 3.9346 -1.2908 2.0978 37 1 3.9097 0.3369 1.3715 38 1 1.6572 -0.2208 2.1399 39 1 1.6973 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273427998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:46 Heat of formation + Delta-G solvation = -35.580113 kcal Electronic energy + Delta-G solvation = -19927.228146 eV Core-core repulsion = 16868.585826 eV Total energy + Delta-G solvation = -3058.642320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65405 -39.75972 -36.99049 -36.57652 -35.13114 -34.66470 -32.39789 -31.30859 -29.23624 -26.68766 -24.76616 -24.41290 -23.37662 -22.74115 -21.03665 -19.44355 -18.47919 -17.31964 -17.18153 -16.63183 -16.45920 -15.99046 -15.60428 -15.49314 -15.30257 -14.94380 -14.75959 -14.35584 -14.26946 -13.76458 -13.59988 -13.37469 -13.11928 -12.95268 -12.80539 -12.76640 -12.50042 -12.44395 -12.25501 -12.21829 -11.74210 -11.64236 -11.49047 -11.38344 -11.09396 -10.59354 -10.16594 -9.51242 -8.22642 -6.32475 1.42380 1.43451 1.56060 1.64572 1.75476 1.79581 2.12754 2.42114 2.86057 2.98763 3.12422 3.62780 3.68091 3.85041 4.00968 4.22568 4.30917 4.44896 4.52839 4.54925 4.64421 4.72366 4.81102 4.87377 4.89634 5.01521 5.03760 5.12854 5.19400 5.32561 5.40201 5.50554 5.56457 5.61136 5.80272 5.92540 6.18995 6.57009 6.80727 6.98052 7.36819 7.55924 8.89452 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038502 B = 0.003507 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.069680 B = 7983.232224 C = 8267.128849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.041 3.959 3 C 0.238 3.762 4 N -0.488 5.488 5 C -0.118 4.118 6 C 0.098 3.902 7 N -0.625 5.625 8 C 0.702 3.298 9 O -0.635 6.635 10 N -0.734 5.734 11 C 0.160 3.840 12 C 0.024 3.976 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.120 3.880 22 C -0.115 4.115 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.404 0.596 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.011 0.989 34 H 0.006 0.994 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.770 9.079 7.552 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.037 3.963 3 C -0.079 4.079 4 N -0.164 5.164 5 C -0.157 4.157 6 C -0.025 4.025 7 N -0.363 5.363 8 C 0.403 3.597 9 O -0.517 6.517 10 N -0.391 5.391 11 C 0.036 3.964 12 C -0.013 4.013 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.204 1.204 21 C -0.003 4.003 22 C -0.154 4.154 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.242 0.758 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.904 10.343 8.120 22.214 hybrid contribution 0.896 -0.614 -0.649 1.265 sum -17.008 9.730 7.470 20.970 Atomic orbital electron populations 1.21900 0.88469 1.05296 1.03778 1.18576 0.98516 0.81142 0.98072 1.29632 0.91718 0.94852 0.91714 1.81263 1.10702 1.14462 1.09935 1.22111 0.93011 1.03374 0.97196 1.21892 0.96084 0.98976 0.85514 1.47275 1.44874 1.35753 1.08357 1.16040 0.79521 0.80248 0.83857 1.90845 1.66949 1.61610 1.32286 1.45417 1.41763 1.44467 1.07464 1.21082 0.87779 0.88924 0.98654 1.19125 0.95789 0.95911 0.90512 1.21487 1.20966 1.22803 0.93063 0.92330 1.25847 0.99295 0.98875 0.95076 1.70056 1.44040 1.44436 0.98026 0.85409 0.78582 0.78646 0.78476 1.18996 1.20127 1.20387 1.21487 0.95279 0.97754 0.85769 1.22011 0.93136 1.03069 0.97149 0.88286 0.91005 0.90931 0.87394 0.87354 0.92162 0.89028 0.75798 0.93533 0.94139 0.97031 0.97535 0.92566 0.89750 0.92836 0.87667 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.43 71.98 0.61 -0.06 16 2 C 0.04 0.43 0.72 -53.96 -0.04 0.39 16 3 C 0.24 4.17 11.43 89.44 1.02 5.19 16 4 N -0.49 -11.86 18.54 20.01 0.37 -11.49 16 5 C -0.12 -1.25 4.88 30.67 0.15 -1.10 16 6 C 0.10 1.79 6.04 86.36 0.52 2.31 16 7 N -0.62 -15.52 2.98 -837.75 -2.50 -18.02 16 8 C 0.70 24.36 8.30 179.05 1.49 25.85 16 9 O -0.63 -27.15 15.77 -3.97 -0.06 -27.21 16 10 N -0.73 -25.97 5.47 -478.53 -2.62 -28.58 16 11 C 0.16 6.95 5.62 86.38 0.49 7.44 16 12 C 0.02 1.21 5.09 29.85 0.15 1.36 16 13 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 15 C 0.01 0.44 5.46 84.66 0.46 0.90 16 16 N -0.93 -53.81 13.29 21.45 0.28 -53.52 16 17 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.12 2.51 6.07 86.22 0.52 3.03 16 22 C -0.11 -1.35 4.87 30.53 0.15 -1.20 16 23 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 25 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.18 7.38 -2.39 -0.02 1.16 16 29 H 0.09 1.64 5.64 -2.38 -0.01 1.63 16 30 H 0.40 12.21 5.96 -92.70 -0.55 11.66 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.08 2.10 7.00 -2.38 -0.02 2.08 16 37 H 0.05 1.17 7.38 -2.38 -0.02 1.15 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -73.25 321.86 3.76 -69.49 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.50 Total: 9.88 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 5.75 Total: 14.00 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.45 Total: -111.62 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.06 Total: -27.21 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.25 3.76 -69.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273427998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.914 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds