Wall clock time and date at job start Mon Mar 30 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35316 * 126.12387 * 2 1 4 4 C 1.39873 * 107.91982 * 180.14727 * 3 2 1 5 5 C 1.50698 * 125.89978 * 179.86712 * 4 3 2 6 6 C 1.53006 * 109.46914 * 124.71419 * 5 4 3 7 7 H 1.09000 * 109.47050 * 54.99940 * 6 5 4 8 8 C 1.52999 * 109.46626 * 174.99639 * 6 5 4 9 9 N 1.46492 * 109.47363 * 294.99800 * 6 5 4 10 10 C 1.34780 * 120.00132 * 154.99846 * 9 6 5 11 11 O 1.21273 * 119.99697 * 0.02562 * 10 9 6 12 12 C 1.50697 * 119.99941 * 179.97438 * 10 9 6 13 13 C 1.53000 * 109.47058 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47143 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99982 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00044 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46831 * 90.00355 * 18 16 14 20 20 H 1.48502 * 109.47141 * 210.00059 * 18 16 14 21 21 H 1.48494 * 109.47407 * 330.00174 * 18 16 14 22 22 N 1.30837 * 108.19690 * 359.60173 * 4 3 2 23 23 N 1.34942 * 126.12756 * 179.71178 * 2 1 3 24 24 H 0.97001 * 126.03615 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.47280 * 270.26639 * 1 2 3 26 26 H 1.08999 * 109.46968 * 30.26695 * 1 2 3 27 27 H 1.08997 * 109.47049 * 150.26318 * 1 2 3 28 28 H 1.08001 * 126.04334 * 0.02730 * 3 2 1 29 29 H 1.08995 * 109.47549 * 4.71687 * 5 4 3 30 30 H 1.09000 * 109.46862 * 244.71367 * 5 4 3 31 31 H 1.09002 * 109.46719 * 180.02562 * 8 6 5 32 32 H 1.08993 * 109.47839 * 299.99931 * 8 6 5 33 33 H 1.09000 * 109.47160 * 60.00369 * 8 6 5 34 34 H 0.97006 * 119.99963 * 335.00232 * 9 6 5 35 35 H 1.09000 * 109.47591 * 300.00338 * 12 10 9 36 36 H 1.09007 * 109.47167 * 60.00308 * 12 10 9 37 37 H 1.09000 * 109.46985 * 300.00451 * 13 12 10 38 38 H 1.08991 * 109.46984 * 60.00363 * 13 12 10 39 39 H 0.96998 * 120.00329 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0034 5 6 4.8543 1.5396 -0.0074 6 6 5.7524 1.1739 1.1761 7 1 5.9858 0.1098 1.1398 8 6 7.0486 1.9833 1.1017 9 7 5.0574 1.4790 2.4291 10 6 5.3825 0.8185 3.5581 11 8 6.2507 -0.0279 3.5368 12 6 4.6679 1.1327 4.8471 13 6 5.2232 0.2497 5.9664 14 6 4.5082 0.5635 7.2554 15 1 3.7353 1.3176 7.2744 16 6 4.8414 -0.1115 8.4105 17 7 5.7836 -1.0288 8.3877 18 14 3.9556 0.2780 10.0084 19 1 2.7616 -0.5954 10.1379 20 1 4.8709 0.0381 11.1529 21 1 3.5302 1.7007 10.0045 22 7 3.6333 -0.6523 0.0032 23 7 2.3026 -1.0899 0.0055 24 1 2.0055 -2.0133 0.0105 25 1 -0.3634 0.0048 1.0276 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3633 -0.8923 -0.5097 28 1 1.9740 2.1211 0.0004 29 1 4.5484 2.5823 0.0772 30 1 5.4033 1.3964 -0.9381 31 1 7.6886 1.7225 1.9446 32 1 7.5658 1.7564 0.1695 33 1 6.8151 3.0474 1.1380 34 1 4.3631 2.1563 2.4462 35 1 4.8220 2.1813 5.1018 36 1 3.6015 0.9408 4.7276 37 1 5.0695 -0.7990 5.7120 38 1 6.2893 0.4421 6.0858 39 1 6.0183 -1.5033 9.2004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291841598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:46 Heat of formation + Delta-G solvation = -20.440218 kcal Electronic energy + Delta-G solvation = -19692.289055 eV Core-core repulsion = 16634.303251 eV Total energy + Delta-G solvation = -3057.985804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17160 -40.70410 -37.30438 -35.55272 -33.93862 -33.14434 -32.36970 -31.46936 -28.15367 -27.78327 -27.69647 -24.19244 -22.45459 -21.43179 -21.15026 -20.58170 -18.82894 -18.25447 -17.48860 -16.99332 -16.48508 -16.37794 -15.90711 -15.24172 -14.92564 -14.62217 -14.43445 -14.32907 -14.07217 -13.94884 -13.51544 -13.30799 -13.24672 -13.05381 -13.00951 -12.81502 -12.46975 -12.45969 -12.02973 -11.92253 -11.64038 -11.33567 -11.30827 -10.68711 -10.58308 -10.24805 -9.96864 -9.48728 -8.18623 -6.33478 0.98858 1.41032 1.44476 1.55631 1.77973 1.85764 2.02538 2.31840 2.46346 3.14040 3.66114 3.78513 3.98075 4.11980 4.24178 4.36041 4.40613 4.50758 4.54218 4.63673 4.76560 4.77620 4.84652 4.86809 4.94888 5.04634 5.12514 5.18924 5.29400 5.36855 5.47254 5.61123 5.66224 5.78732 5.84196 6.16568 6.47745 6.69812 6.80449 6.85000 7.36790 7.44224 8.94348 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.004332 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.318549 B = 6462.604849 C = 7453.234338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.086 3.914 3 C -0.284 4.284 4 C 0.071 3.929 5 C -0.037 4.037 6 C 0.145 3.855 7 H 0.048 0.952 8 C -0.156 4.156 9 N -0.708 5.708 10 C 0.510 3.490 11 O -0.593 6.593 12 C -0.118 4.118 13 C 0.044 3.956 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.977 3.023 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.253 1.253 22 N -0.340 5.340 23 N -0.482 5.482 24 H 0.442 0.558 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.106 0.894 36 H 0.096 0.904 37 H -0.024 1.024 38 H -0.018 1.018 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 9.560 -21.392 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.313 4.313 4 C -0.095 4.095 5 C -0.076 4.076 6 C 0.040 3.960 7 H 0.067 0.933 8 C -0.214 4.214 9 N -0.361 5.361 10 C 0.298 3.702 11 O -0.473 6.473 12 C -0.157 4.157 13 C 0.006 3.994 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.177 1.177 22 N -0.164 5.164 23 N -0.191 5.191 24 H 0.287 0.713 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.189 0.811 29 H 0.142 0.858 30 H 0.128 0.872 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.124 0.876 36 H 0.114 0.886 37 H -0.006 1.006 38 H 0.000 1.000 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.453 7.821 -21.336 25.013 hybrid contribution -0.726 -0.242 1.037 1.289 sum -11.180 7.579 -20.300 24.383 Atomic orbital electron populations 1.20592 0.84535 1.05380 1.04332 1.21813 0.96301 0.87236 0.98979 1.21509 0.90845 1.00517 1.18424 1.22584 0.96952 0.91384 0.98565 1.20451 0.90313 0.98814 0.98065 1.20904 0.92676 0.99335 0.83130 0.93324 1.22127 0.96011 1.01200 1.02110 1.45928 1.41021 1.41539 1.07658 1.21277 0.82324 0.79976 0.86595 1.90640 1.34672 1.35238 1.86731 1.21607 1.00538 1.02667 0.90931 1.18663 0.94638 0.93261 0.92809 1.21711 1.20637 1.21600 0.94156 0.90542 1.26179 0.95910 0.94650 1.03759 1.70194 1.32261 1.26002 1.29484 0.85284 0.77948 0.79456 0.77323 1.19698 1.21090 1.17692 1.77286 0.98000 1.14210 1.26914 1.46398 1.03676 1.09185 1.59881 0.71307 0.89540 0.87696 0.89863 0.81064 0.85838 0.87176 0.95337 0.89681 0.89723 0.74930 0.87590 0.88571 1.00605 0.99976 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.43 71.24 0.74 -0.11 16 2 C 0.09 1.56 7.21 41.41 0.30 1.86 16 3 C -0.28 -5.37 10.64 21.99 0.23 -5.13 16 4 C 0.07 1.68 6.22 43.10 0.27 1.94 16 5 C -0.04 -0.67 5.34 29.85 0.16 -0.51 16 6 C 0.14 3.83 2.55 44.99 0.11 3.94 16 7 H 0.05 1.74 7.52 -2.39 -0.02 1.72 16 8 C -0.16 -3.57 9.48 71.98 0.68 -2.88 16 9 N -0.71 -20.71 4.79 -442.55 -2.12 -22.83 16 10 C 0.51 21.40 7.79 87.66 0.68 22.08 16 11 O -0.59 -31.56 15.64 -3.01 -0.05 -31.60 16 12 C -0.12 -5.04 5.64 29.85 0.17 -4.87 16 13 C 0.04 2.57 4.26 29.85 0.13 2.70 16 14 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 15 H 0.08 4.07 7.74 -2.91 -0.02 4.04 16 16 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 17 N -0.94 -61.21 13.29 21.45 0.28 -60.93 16 18 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 22 N -0.34 -9.96 12.61 -47.38 -0.60 -10.56 16 23 N -0.48 -10.96 7.36 -48.00 -0.35 -11.32 16 24 H 0.44 7.91 8.96 -213.33 -1.91 6.00 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.12 1.34 8.12 -2.39 -0.02 1.32 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 8.94 8.60 -92.70 -0.80 8.14 16 35 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 36 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 37 H -0.02 -1.64 8.10 -2.39 -0.02 -1.65 16 38 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 39 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -87.56 335.46 1.71 -85.85 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -1.66 Total: 16.95 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.17 Total: -12.63 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -2.79 Total: -105.63 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.05 Total: -31.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -87.56 1.71 -85.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291841598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.407 kcal (2) G-P(sol) polarization free energy of solvation -87.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds