Wall clock time and date at job start Mon Mar 30 2020 04:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99738 * 2 1 4 4 H 1.48498 * 109.47128 * 240.00002 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47174 * 119.99934 * 3 2 1 7 7 C 1.37878 * 120.00648 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99539 * 359.72477 * 7 2 1 10 10 O 1.42895 * 109.47123 * 180.27572 * 9 7 2 11 11 C 1.42903 * 114.00102 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47216 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47168 * 66.09477 * 12 11 10 14 14 C 1.47907 * 110.99966 * 293.51272 * 13 12 11 15 15 C 1.53989 * 107.05706 * 214.15612 * 14 13 12 16 16 C 1.54594 * 105.14300 * 1.22526 * 15 14 13 17 17 C 1.48530 * 111.00053 * 176.11654 * 13 12 11 18 18 H 1.09001 * 110.66711 * 41.28711 * 17 13 12 19 19 C 1.50698 * 110.66866 * 278.15741 * 17 13 12 20 20 C 1.35309 * 126.13113 * 154.71528 * 19 17 13 21 21 C 1.39872 * 107.92233 * 179.90494 * 20 19 17 22 22 N 1.30828 * 108.20037 * 0.35887 * 21 20 19 23 23 N 1.34949 * 126.12411 * 335.02088 * 19 17 13 24 24 H 0.97004 * 126.03992 * 359.94909 * 23 19 17 25 25 H 0.97002 * 120.00470 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47089 * 300.27786 * 9 7 2 27 27 H 1.09004 * 109.47623 * 60.27299 * 9 7 2 28 28 H 1.09004 * 109.46761 * 299.99954 * 11 10 9 29 29 H 1.09000 * 109.47455 * 59.99798 * 11 10 9 30 30 H 1.08998 * 109.47134 * 186.09482 * 12 11 10 31 31 H 1.09002 * 109.46790 * 306.09764 * 12 11 10 32 32 H 1.09000 * 109.91504 * 333.51310 * 14 13 12 33 33 H 1.09000 * 109.91535 * 94.60549 * 14 13 12 34 34 H 1.08996 * 110.31212 * 120.14081 * 15 14 13 35 35 H 1.09000 * 110.31045 * 242.20953 * 15 14 13 36 36 H 1.08998 * 110.73003 * 140.31588 * 16 15 14 37 37 H 1.09005 * 110.72485 * 263.42208 * 16 15 14 38 38 H 1.08007 * 126.03709 * 0.02641 * 20 19 17 39 39 H 1.08002 * 125.89518 * 180.14575 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0074 10 8 2.1798 -3.5852 0.0131 11 6 1.5653 -4.8753 0.0193 12 6 2.6483 -5.9561 0.0257 13 7 3.3904 -5.8981 1.2921 14 6 4.1610 -4.6401 1.3979 15 6 5.4586 -4.9679 2.1595 16 6 5.3861 -6.4853 2.4464 17 6 4.3902 -6.9935 1.3738 18 1 4.8924 -7.1282 0.4158 19 6 3.7380 -8.2770 1.8191 20 6 4.1795 -9.5289 1.5576 21 6 3.2909 -10.4315 2.1510 22 7 2.3455 -9.7461 2.7409 23 7 2.6056 -8.3836 2.5454 24 1 2.0670 -7.6469 2.8743 25 1 -0.4851 0.8400 -0.0004 26 1 0.6244 -2.5522 0.8977 27 1 0.6244 -2.5616 -0.8823 28 1 0.9449 -4.9779 0.9096 29 1 0.9454 -4.9868 -0.8703 30 1 2.1838 -6.9366 -0.0787 31 1 3.3338 -5.7884 -0.8051 32 1 4.3992 -4.2658 0.4023 33 1 3.5833 -3.8958 1.9458 34 1 6.3275 -4.7409 1.5418 35 1 5.5017 -4.4066 3.0928 36 1 6.3636 -6.9497 2.3161 37 1 5.0036 -6.6702 3.4502 38 1 5.0633 -9.7859 0.9922 39 1 3.3697 -11.5083 2.1237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294106392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:56 Heat of formation + Delta-G solvation = 24.970532 kcal Electronic energy + Delta-G solvation = -20184.006082 eV Core-core repulsion = 17127.989435 eV Total energy + Delta-G solvation = -3056.016647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28430 -38.89099 -36.59442 -33.06600 -32.24402 -31.76419 -30.75313 -28.29235 -27.62675 -26.65202 -22.82614 -22.33010 -21.87076 -21.26062 -20.23166 -20.19934 -17.49088 -16.44248 -16.17905 -15.59345 -15.24769 -14.64921 -14.50870 -14.23842 -14.08308 -13.91924 -13.55146 -13.26785 -12.94584 -12.68613 -12.50518 -11.77666 -11.61103 -11.33975 -11.26367 -11.04743 -10.84592 -10.80730 -10.71400 -10.59797 -10.41357 -10.01829 -9.52930 -9.15103 -8.85889 -8.64098 -8.41728 -8.20613 -6.14343 -4.16594 1.87846 2.76922 2.94132 3.28614 3.32043 3.35048 3.88309 4.30544 4.51936 4.66328 4.82015 4.85212 4.96544 5.04122 5.22168 5.26630 5.38158 5.54116 5.57525 5.59737 5.65505 5.81695 5.87584 5.93930 6.00892 6.02517 6.11092 6.22542 6.35759 6.57244 6.59840 6.98076 7.07212 7.11463 7.33667 7.39741 7.70271 7.74356 8.11232 8.52481 8.95884 9.48445 10.97065 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033768 B = 0.004041 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.000136 B = 6928.134304 C = 7452.853420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.393 6.393 11 C 0.066 3.934 12 C 0.051 3.949 13 N -0.517 5.517 14 C 0.052 3.948 15 C -0.135 4.135 16 C -0.109 4.109 17 C 0.116 3.884 18 H 0.079 0.921 19 C 0.118 3.882 20 C -0.283 4.283 21 C 0.045 3.955 22 N -0.302 5.302 23 N -0.453 5.453 24 H 0.444 0.556 25 H 0.265 0.735 26 H 0.005 0.995 27 H 0.003 0.997 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.711 -16.314 3.143 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.313 6.313 11 C -0.012 4.012 12 C -0.077 4.077 13 N -0.242 5.242 14 C -0.075 4.075 15 C -0.173 4.173 16 C -0.147 4.147 17 C 0.006 3.994 18 H 0.097 0.903 19 C -0.013 4.013 20 C -0.313 4.313 21 C -0.141 4.141 22 N -0.125 5.125 23 N -0.161 5.161 24 H 0.289 0.711 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.020 0.980 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.161 0.839 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.268 -16.266 4.230 18.731 hybrid contribution 0.993 1.287 -1.099 1.962 sum 9.261 -14.979 3.131 17.887 Atomic orbital electron populations 1.69947 1.06124 1.27297 1.50324 1.24944 0.94946 0.99412 0.95130 0.86418 0.79337 0.82031 0.78808 1.20052 1.21163 1.20000 1.20984 0.93888 0.89355 1.51086 0.91687 1.20164 0.88763 0.83554 0.95295 1.87862 1.35325 1.12913 1.95181 1.22208 0.94152 0.85400 0.99472 1.22338 0.96691 0.98339 0.90321 1.64668 1.23034 1.02453 1.34004 1.22830 0.92375 0.91225 1.01063 1.22516 0.98411 0.95199 1.01190 1.22463 0.98087 0.95769 0.98429 1.21416 0.91907 0.87331 0.98751 0.90341 1.20823 0.89271 0.95919 0.95300 1.21179 1.05949 0.90794 1.13403 1.23766 0.92886 1.00263 0.97195 1.77329 1.23776 0.86832 1.24585 1.46363 1.20681 1.06691 1.42402 0.71058 0.92573 0.97756 0.97953 0.93740 0.94082 0.90565 0.93647 0.91981 0.88733 0.91469 0.90875 0.90710 0.90881 0.83874 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -14.71 9.43 -34.44 -0.32 -15.03 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.20 5.23 5.69 36.01 0.20 5.44 16 10 O -0.39 -8.83 7.49 -35.23 -0.26 -9.09 16 11 C 0.07 1.18 6.20 37.16 0.23 1.41 16 12 C 0.05 0.74 5.25 -3.82 -0.02 0.72 16 13 N -0.52 -7.07 4.78 -223.99 -1.07 -8.14 16 14 C 0.05 0.78 5.06 -2.75 -0.01 0.77 16 15 C -0.13 -1.56 6.93 -25.38 -0.18 -1.74 16 16 C -0.11 -1.12 6.48 -24.87 -0.16 -1.28 16 17 C 0.12 1.32 2.77 -66.94 -0.19 1.13 16 18 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 19 C 0.12 1.39 5.87 -82.27 -0.48 0.90 16 20 C -0.28 -3.05 10.72 -40.01 -0.43 -3.47 16 21 C 0.04 0.49 12.03 -17.37 -0.21 0.28 16 22 N -0.30 -4.01 12.70 30.62 0.39 -3.62 16 23 N -0.45 -5.70 7.24 33.47 0.24 -5.46 16 24 H 0.44 5.39 8.86 -182.61 -1.62 3.77 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 31 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.06 1.04 6.96 -51.93 -0.36 0.68 16 33 H 0.09 1.69 7.64 -51.93 -0.40 1.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 38 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -30.74 322.82 -9.17 -39.90 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.38 Total: 0.32 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.66 Total: -9.35 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.30 Total: -43.09 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.26 Total: -9.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.74 -9.17 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294106392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.875 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds