Wall clock time and date at job start Mon Mar 30 2020 04:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99738 * 2 1 4 4 H 1.48498 * 109.47128 * 240.00002 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47174 * 119.99934 * 3 2 1 7 7 C 1.37878 * 120.00648 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99539 * 359.72477 * 7 2 1 10 10 O 1.42895 * 109.47123 * 180.27572 * 9 7 2 11 11 C 1.42903 * 114.00102 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47216 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47168 * 66.09477 * 12 11 10 14 14 C 1.47907 * 110.99966 * 293.51272 * 13 12 11 15 15 C 1.53989 * 107.05706 * 214.15612 * 14 13 12 16 16 C 1.54594 * 105.14300 * 1.22526 * 15 14 13 17 17 C 1.48530 * 111.00053 * 176.11654 * 13 12 11 18 18 H 1.09001 * 110.66711 * 41.28711 * 17 13 12 19 19 C 1.50698 * 110.66866 * 278.15741 * 17 13 12 20 20 C 1.35309 * 126.13113 * 154.71528 * 19 17 13 21 21 C 1.39872 * 107.92233 * 179.90494 * 20 19 17 22 22 N 1.30828 * 108.20037 * 0.35887 * 21 20 19 23 23 N 1.34949 * 126.12411 * 335.02088 * 19 17 13 24 24 H 0.97004 * 126.03992 * 359.94909 * 23 19 17 25 25 H 0.97002 * 120.00470 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47089 * 300.27786 * 9 7 2 27 27 H 1.09004 * 109.47623 * 60.27299 * 9 7 2 28 28 H 1.09004 * 109.46761 * 299.99954 * 11 10 9 29 29 H 1.09000 * 109.47455 * 59.99798 * 11 10 9 30 30 H 1.08998 * 109.47134 * 186.09482 * 12 11 10 31 31 H 1.09002 * 109.46790 * 306.09764 * 12 11 10 32 32 H 1.09000 * 109.91504 * 333.51310 * 14 13 12 33 33 H 1.09000 * 109.91535 * 94.60549 * 14 13 12 34 34 H 1.08996 * 110.31212 * 120.14081 * 15 14 13 35 35 H 1.09000 * 110.31045 * 242.20953 * 15 14 13 36 36 H 1.08998 * 110.73003 * 140.31588 * 16 15 14 37 37 H 1.09005 * 110.72485 * 263.42208 * 16 15 14 38 38 H 1.08007 * 126.03709 * 0.02641 * 20 19 17 39 39 H 1.08002 * 125.89518 * 180.14575 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0074 10 8 2.1798 -3.5852 0.0131 11 6 1.5653 -4.8753 0.0193 12 6 2.6483 -5.9561 0.0257 13 7 3.3904 -5.8981 1.2921 14 6 4.1610 -4.6401 1.3979 15 6 5.4586 -4.9679 2.1595 16 6 5.3861 -6.4853 2.4464 17 6 4.3902 -6.9935 1.3738 18 1 4.8924 -7.1282 0.4158 19 6 3.7380 -8.2770 1.8191 20 6 4.1795 -9.5289 1.5576 21 6 3.2909 -10.4315 2.1510 22 7 2.3455 -9.7461 2.7409 23 7 2.6056 -8.3836 2.5454 24 1 2.0670 -7.6469 2.8743 25 1 -0.4851 0.8400 -0.0004 26 1 0.6244 -2.5522 0.8977 27 1 0.6244 -2.5616 -0.8823 28 1 0.9449 -4.9779 0.9096 29 1 0.9454 -4.9868 -0.8703 30 1 2.1838 -6.9366 -0.0787 31 1 3.3338 -5.7884 -0.8051 32 1 4.3992 -4.2658 0.4023 33 1 3.5833 -3.8958 1.9458 34 1 6.3275 -4.7409 1.5418 35 1 5.5017 -4.4066 3.0928 36 1 6.3636 -6.9497 2.3161 37 1 5.0036 -6.6702 3.4502 38 1 5.0633 -9.7859 0.9922 39 1 3.3697 -11.5083 2.1237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294106392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:56 Heat of formation + Delta-G solvation = 3.783704 kcal Electronic energy + Delta-G solvation = -20184.924812 eV Core-core repulsion = 17127.989435 eV Total energy + Delta-G solvation = -3056.935376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16808 -40.02180 -38.30004 -35.03219 -33.65509 -32.69167 -31.64034 -29.95281 -28.60083 -28.42041 -24.60651 -23.77774 -23.03116 -22.13020 -21.36525 -21.07815 -18.60763 -18.46307 -17.61223 -17.04688 -16.65676 -16.19451 -15.73955 -15.55516 -15.29876 -14.94254 -14.83001 -14.36814 -14.16495 -13.94994 -13.76387 -13.46215 -12.97908 -12.95984 -12.58581 -12.48614 -12.34951 -12.26339 -12.05724 -11.76656 -11.63453 -11.44820 -11.25848 -10.87050 -10.43532 -10.22854 -9.55704 -9.49004 -8.32576 -6.44977 0.99842 1.39354 1.43758 1.52098 1.95462 2.06022 2.33373 2.81501 3.01676 3.16014 3.57174 3.71604 3.92266 4.06535 4.14347 4.25167 4.29193 4.33141 4.49173 4.58206 4.66631 4.72124 4.74747 4.83709 4.86734 4.95909 4.99486 5.09803 5.16789 5.20880 5.27773 5.35612 5.53854 5.81651 5.88461 5.95026 5.97927 6.43464 6.51632 6.80162 6.83295 7.26970 8.79609 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033768 B = 0.004041 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.000136 B = 6928.134304 C = 7452.853420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.211 3.789 10 O -0.395 6.395 11 C 0.058 3.942 12 C 0.065 3.935 13 N -0.524 5.524 14 C 0.056 3.944 15 C -0.128 4.128 16 C -0.100 4.100 17 C 0.121 3.879 18 H 0.093 0.907 19 C 0.109 3.891 20 C -0.280 4.280 21 C 0.045 3.955 22 N -0.337 5.337 23 N -0.464 5.464 24 H 0.441 0.559 25 H 0.270 0.730 26 H -0.019 1.019 27 H -0.019 1.019 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.169 0.831 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -17.172 2.989 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.136 3.864 10 O -0.314 6.314 11 C -0.019 4.019 12 C -0.064 4.064 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.138 4.138 17 C 0.011 3.989 18 H 0.111 0.889 19 C -0.022 4.022 20 C -0.310 4.310 21 C -0.140 4.140 22 N -0.160 5.160 23 N -0.172 5.172 24 H 0.285 0.715 25 H 0.079 0.921 26 H -0.002 1.002 27 H -0.001 1.001 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.186 0.814 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.489 -17.158 4.077 20.520 hybrid contribution 0.265 1.439 -1.049 1.801 sum 10.755 -15.719 3.028 19.285 Atomic orbital electron populations 1.70069 1.07870 1.28653 1.50606 1.25963 0.95889 1.03429 0.94004 0.85256 0.78092 0.76781 0.79435 1.18929 1.20292 1.18888 1.21326 0.94098 0.90599 1.52030 0.91718 1.19757 0.88655 0.84906 0.93046 1.87853 1.34664 1.13821 1.95110 1.22484 0.95721 0.84302 0.99431 1.22197 0.95799 0.97443 0.90914 1.64571 1.23995 1.02852 1.33439 1.22632 0.93707 0.91073 0.99761 1.22462 0.96800 0.96365 1.00958 1.22452 0.99108 0.94556 0.97697 1.21473 0.91349 0.86240 0.99794 0.88946 1.20982 0.89254 0.96412 0.95532 1.21521 1.06457 0.90096 1.12906 1.24365 0.91979 1.01770 0.95889 1.77312 1.25317 0.87260 1.26104 1.46418 1.21186 1.06591 1.43043 0.71462 0.92133 1.00166 1.00120 0.94254 0.93646 0.88712 0.93421 0.94103 0.92582 0.89922 0.90755 0.87930 0.91443 0.81390 0.77307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.78 9.43 25.60 0.24 -31.54 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.79 5.69 71.24 0.41 12.19 16 10 O -0.39 -18.45 7.49 -148.98 -1.12 -19.57 16 11 C 0.06 2.14 6.20 71.98 0.45 2.59 16 12 C 0.06 1.85 5.25 86.30 0.45 2.30 16 13 N -0.52 -14.11 4.78 -862.56 -4.13 -18.23 16 14 C 0.06 1.69 5.06 86.44 0.44 2.13 16 15 C -0.13 -2.77 6.93 31.47 0.22 -2.55 16 16 C -0.10 -1.80 6.48 31.80 0.21 -1.60 16 17 C 0.12 2.49 2.77 44.52 0.12 2.61 16 18 H 0.09 1.70 8.02 -2.39 -0.02 1.68 16 19 C 0.11 2.33 5.87 41.40 0.24 2.57 16 20 C -0.28 -5.16 10.72 21.99 0.24 -4.93 16 21 C 0.05 0.88 12.03 85.24 1.03 1.90 16 22 N -0.34 -8.53 12.70 -57.02 -0.72 -9.26 16 23 N -0.46 -11.29 7.24 -48.01 -0.35 -11.64 16 24 H 0.44 10.75 8.86 -213.33 -1.89 8.86 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 27 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 2.39 7.88 -2.39 -0.02 2.37 16 31 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 32 H 0.04 1.39 6.96 -2.39 -0.02 1.37 16 33 H 0.06 2.11 7.64 -2.39 -0.02 2.09 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.32 8.05 -2.38 -0.02 1.30 16 38 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -67.49 322.82 -0.36 -67.85 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.86 Total: 14.39 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.50 Total: -13.54 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -4.91 Total: -95.06 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.12 Total: -19.57 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.49 -0.36 -67.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294106392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.634 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds