Wall clock time and date at job start Mon Mar 30 2020 04:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35460 * 117.00230 * 2 1 4 4 N 1.32332 * 119.19362 * 0.02562 * 3 2 1 5 5 C 1.32283 * 120.75512 * 179.97438 * 4 3 2 6 6 C 1.38613 * 119.17582 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.73598 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47253 * 104.70043 * 7 6 5 9 9 C 1.46894 * 110.99761 * 288.28046 * 8 7 6 10 10 C 1.46899 * 111.00226 * 164.33106 * 8 7 6 11 11 H 1.09007 * 109.46749 * 309.99474 * 10 8 7 12 12 C 1.52999 * 109.47346 * 69.99395 * 10 8 7 13 13 C 1.50694 * 109.47430 * 190.00119 * 10 8 7 14 14 H 1.07998 * 119.99799 * 359.97438 * 13 10 8 15 15 C 1.37872 * 120.00369 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00453 * 179.97438 * 15 13 10 17 17 Si 1.86807 * 119.99998 * 359.97438 * 15 13 10 18 18 H 1.48491 * 109.46827 * 89.99952 * 17 15 13 19 19 H 1.48499 * 109.46984 * 210.00260 * 17 15 13 20 20 H 1.48497 * 109.46896 * 329.99927 * 17 15 13 21 21 C 1.38570 * 118.52193 * 359.97438 * 6 5 4 22 22 C 1.50699 * 120.41015 * 180.02562 * 21 6 5 23 23 N 1.32303 * 119.19433 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.47107 * 59.99652 * 1 2 3 25 25 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46628 * 300.00178 * 1 2 3 27 27 H 1.08005 * 120.41117 * 179.97438 * 5 4 3 28 28 H 1.09008 * 109.47089 * 224.69412 * 7 6 5 29 29 H 1.08999 * 109.47870 * 344.69710 * 7 6 5 30 30 H 1.08998 * 109.47609 * 66.13751 * 9 8 7 31 31 H 1.08999 * 109.47140 * 186.13673 * 9 8 7 32 32 H 1.09001 * 109.47585 * 306.13512 * 9 8 7 33 33 H 1.08999 * 109.47162 * 300.00020 * 12 10 8 34 34 H 1.08994 * 109.46942 * 60.00463 * 12 10 8 35 35 H 1.09000 * 109.47129 * 179.97438 * 12 10 8 36 36 H 0.96997 * 120.00350 * 179.97438 * 16 15 13 37 37 H 1.09007 * 109.46886 * 275.43483 * 22 21 6 38 38 H 1.08997 * 109.47538 * 35.43451 * 22 21 6 39 39 H 1.08997 * 109.47049 * 155.43825 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3078 2.3065 0.0005 5 6 1.8760 3.5011 0.0010 6 6 3.2592 3.5914 0.0005 7 6 3.9434 4.9341 0.0005 8 7 4.4794 5.2106 1.3400 9 6 3.3977 5.5036 2.2896 10 6 5.4562 6.3071 1.3002 11 1 6.1865 6.1147 0.5141 12 6 4.7329 7.6243 1.0129 13 6 6.1612 6.4004 2.6288 14 1 5.9086 5.7140 3.4234 15 6 7.1286 7.3618 2.8299 16 7 7.7436 7.4436 3.9896 17 14 7.5662 8.5485 1.4551 18 1 6.7026 9.7530 1.5475 19 1 8.9904 8.9495 1.5819 20 1 7.3533 7.8863 0.1432 21 6 3.9988 2.4196 0.0000 22 6 5.5050 2.4681 0.0000 23 7 3.3661 1.2575 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2698 4.3949 0.0010 28 1 4.7590 4.9263 -0.7227 29 1 3.2252 5.7080 -0.2703 30 1 2.7896 4.6107 2.4345 31 1 3.8254 5.8106 3.2441 32 1 2.7755 6.3069 1.8952 33 1 4.2231 7.5569 0.0519 34 1 4.0027 7.8167 1.7989 35 1 5.4577 8.4380 0.9839 36 1 8.4245 8.1198 4.1309 37 1 5.8650 2.5776 -1.0231 38 1 5.8413 3.3164 0.5961 39 1 5.8983 1.5455 0.4267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330388767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:15 Heat of formation + Delta-G solvation = 8.278533 kcal Electronic energy + Delta-G solvation = -20489.514705 eV Core-core repulsion = 17432.774239 eV Total energy + Delta-G solvation = -3056.740466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34369 -39.76210 -38.77811 -35.36788 -34.98030 -33.58340 -31.30069 -29.68862 -28.61737 -27.77760 -27.12622 -25.49978 -24.10479 -22.95407 -20.97703 -19.47747 -18.99517 -18.62278 -17.49870 -17.18726 -16.26089 -16.07705 -15.74667 -15.46763 -15.22382 -15.16533 -14.55240 -14.30893 -14.05807 -13.95998 -13.73876 -13.32871 -13.06599 -12.99510 -12.91750 -12.82734 -12.51023 -12.25381 -12.17726 -11.96407 -11.71342 -11.48271 -11.37056 -11.02284 -10.69950 -10.20953 -9.80359 -8.90036 -8.20700 -6.23114 -0.03559 0.05789 1.36350 1.41850 1.51743 1.59853 2.38289 2.64938 3.04175 3.14563 3.38048 3.58898 3.67648 3.88169 4.03385 4.39256 4.40605 4.48625 4.48753 4.55572 4.66216 4.66780 4.69191 4.73021 4.78000 4.82860 4.90804 4.99589 5.07600 5.11743 5.27049 5.41861 5.49896 5.70190 5.77037 6.08415 6.14723 6.42693 6.74803 6.84673 7.05777 7.41665 8.96346 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038293 B = 0.004558 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.026280 B = 6142.099873 C = 6288.130046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.478 3.522 4 N -0.576 5.576 5 C 0.190 3.810 6 C -0.212 4.212 7 C 0.106 3.894 8 N -0.533 5.533 9 C 0.042 3.958 10 C 0.186 3.814 11 H 0.044 0.956 12 C -0.183 4.183 13 C -0.497 4.497 14 H 0.035 0.965 15 C 0.010 3.990 16 N -0.954 5.954 17 Si 0.949 3.051 18 H -0.272 1.272 19 H -0.306 1.306 20 H -0.239 1.239 21 C 0.226 3.774 22 C -0.109 4.109 23 N -0.557 5.557 24 H 0.065 0.935 25 H 0.131 0.869 26 H 0.060 0.940 27 H 0.199 0.801 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 -7.186 -12.615 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.213 6.213 3 C 0.175 3.825 4 N -0.306 5.306 5 C 0.026 3.974 6 C -0.217 4.217 7 C -0.022 4.022 8 N -0.256 5.256 9 C -0.106 4.106 10 C 0.078 3.922 11 H 0.062 0.938 12 C -0.241 4.241 13 C -0.535 4.535 14 H 0.053 0.947 15 C -0.187 4.187 16 N -0.595 5.595 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.234 1.234 20 H -0.163 1.163 21 C 0.081 3.919 22 C -0.166 4.166 23 N -0.284 5.284 24 H 0.084 0.916 25 H 0.149 0.851 26 H 0.079 0.921 27 H 0.216 0.784 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.683 -8.760 -12.359 20.413 hybrid contribution 0.293 2.096 0.009 2.116 sum -13.391 -6.665 -12.350 19.397 Atomic orbital electron populations 1.23228 0.73880 1.05307 1.02867 1.86050 1.25270 1.22719 1.87242 1.20898 0.86266 0.85448 0.89841 1.68095 1.41049 0.99208 1.22226 1.23348 0.92038 0.94741 0.87274 1.21357 0.95590 0.97558 1.07228 1.20851 0.98782 0.90995 0.91608 1.61965 1.14682 1.42292 1.06678 1.22147 0.92895 0.98851 0.96705 1.19613 0.90623 0.86194 0.95779 0.93782 1.22725 1.00703 0.99722 1.00972 1.21177 1.19106 1.14835 0.98415 0.94653 1.25768 0.95919 0.99382 0.97602 1.70050 1.27360 1.36426 1.25637 0.85863 0.75601 0.79624 0.81233 1.19875 1.23431 1.16276 1.21727 0.98248 0.85918 0.86038 1.20935 0.86324 1.04786 1.04600 1.67428 1.08334 1.31136 1.21534 0.91620 0.85121 0.92095 0.78407 0.89026 0.91686 0.92956 0.93511 0.94248 0.91432 0.92773 0.94813 0.92818 0.87814 0.88588 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.36 113.37 1.17 1.91 16 2 O -0.31 -8.60 10.55 -87.58 -0.92 -9.52 16 3 C 0.48 14.71 8.49 180.57 1.53 16.25 16 4 N -0.58 -15.64 9.23 -313.46 -2.89 -18.53 16 5 C 0.19 4.57 10.72 84.71 0.91 5.48 16 6 C -0.21 -5.67 4.71 -19.70 -0.09 -5.76 16 7 C 0.11 2.81 3.76 85.56 0.32 3.13 16 8 N -0.53 -18.73 3.71 -906.06 -3.37 -22.09 16 9 C 0.04 1.44 8.33 127.69 1.06 2.50 16 10 C 0.19 7.64 1.89 44.17 0.08 7.72 16 11 H 0.04 1.81 6.92 -2.38 -0.02 1.79 16 12 C -0.18 -6.64 7.95 71.98 0.57 -6.07 16 13 C -0.50 -26.54 8.40 25.60 0.22 -26.33 16 14 H 0.04 2.17 7.42 -2.91 -0.02 2.15 16 15 C 0.01 0.54 5.45 84.65 0.46 1.01 16 16 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 17 Si 0.95 42.49 24.38 68.60 1.67 44.16 16 18 H -0.27 -11.71 6.87 99.48 0.68 -11.03 16 19 H -0.31 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.24 -9.51 6.53 99.48 0.65 -8.86 16 21 C 0.23 6.77 6.82 42.57 0.29 7.06 16 22 C -0.11 -2.98 9.45 71.24 0.67 -2.30 16 23 N -0.56 -18.40 10.40 -301.52 -3.14 -21.53 16 24 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 25 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.06 8.09 -2.39 -0.02 1.05 16 27 H 0.20 3.33 8.05 -2.91 -0.02 3.30 16 28 H 0.09 2.29 7.38 -2.38 -0.02 2.27 16 29 H 0.07 1.44 7.05 -2.39 -0.02 1.42 16 30 H 0.05 1.65 7.46 -2.39 -0.02 1.63 16 31 H 0.05 1.92 6.64 -2.39 -0.02 1.91 16 32 H 0.04 1.15 6.70 -2.39 -0.02 1.14 16 33 H 0.07 1.94 7.06 -2.39 -0.02 1.92 16 34 H 0.05 1.98 6.56 -2.39 -0.02 1.97 16 35 H 0.03 1.31 3.27 -2.39 -0.01 1.30 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.10 3.00 6.56 -2.39 -0.02 2.98 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.02 309.06 -0.17 -68.19 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.97 Total: 12.78 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 7.20 Total: 4.59 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -9.09 Total: -120.20 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.92 Total: -9.52 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.67 Total: 44.16 kcal Total: -68.02 -0.17 -68.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330388767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.473 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds