Wall clock time and date at job start Mon Mar 30 2020 04:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39878 * 125.89831 * 2 1 4 4 C 1.35313 * 107.91935 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.12680 * 180.02562 * 4 3 2 6 6 N 1.34950 * 107.75018 * 0.02562 * 4 3 2 7 7 C 1.46501 * 126.03980 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47064 * 359.97438 * 7 6 4 9 9 C 1.53003 * 109.46754 * 239.99288 * 7 6 4 10 10 C 1.50698 * 109.47050 * 119.99483 * 7 6 4 11 11 O 1.21276 * 120.00239 * 0.02562 * 10 7 6 12 12 N 1.34779 * 119.99670 * 179.97438 * 10 7 6 13 13 C 1.46496 * 119.99965 * 179.97438 * 12 10 7 14 14 H 1.09001 * 109.47464 * 325.00834 * 13 12 10 15 15 C 1.53006 * 109.46995 * 85.00573 * 13 12 10 16 16 C 1.50699 * 109.47248 * 205.00258 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99908 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00364 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99946 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47247 * 89.99769 * 20 18 16 22 22 H 1.48496 * 109.47178 * 209.99766 * 20 18 16 23 23 H 1.48504 * 109.47095 * 329.99574 * 20 18 16 24 24 N 1.30842 * 125.90253 * 180.30411 * 2 1 3 25 25 H 1.08999 * 109.46897 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46665 * 210.00206 * 1 2 3 27 27 H 1.09005 * 109.46908 * 330.00032 * 1 2 3 28 28 H 1.07996 * 126.03988 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.47613 * 269.97988 * 5 4 3 30 30 H 1.09001 * 109.47049 * 29.97534 * 5 4 3 31 31 H 1.09000 * 109.47471 * 149.97252 * 5 4 3 32 32 H 1.08994 * 109.46826 * 179.97438 * 9 7 6 33 33 H 1.08999 * 109.47460 * 299.99910 * 9 7 6 34 34 H 1.09004 * 109.46709 * 60.00232 * 9 7 6 35 35 H 0.97003 * 120.00044 * 0.02562 * 12 10 7 36 36 H 1.09001 * 109.47002 * 299.99701 * 15 13 12 37 37 H 1.08993 * 109.46955 * 60.00138 * 15 13 12 38 38 H 1.09000 * 109.47050 * 179.97438 * 15 13 12 39 39 H 0.96999 * 120.00396 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6088 -0.6341 0.0004 7 6 4.7900 -1.5007 0.0003 8 1 5.6909 -0.8871 0.0000 9 6 4.7744 -2.3838 -1.2491 10 6 4.7747 -2.3707 1.2306 11 8 3.8665 -2.2766 2.0287 12 7 5.7700 -3.2543 1.4435 13 6 5.7555 -4.0997 2.6399 14 1 5.3315 -3.5412 3.4744 15 6 4.9056 -5.3440 2.3747 16 6 7.1639 -4.5160 2.9778 17 1 7.9874 -4.1838 2.3632 18 6 7.4010 -5.3212 4.0717 19 7 6.3983 -5.7254 4.8205 20 14 9.1468 -5.8367 4.4911 21 1 9.7515 -4.8370 5.4078 22 1 9.1250 -7.1657 5.1531 23 1 9.9519 -5.9172 3.2458 24 7 2.2743 -1.0598 -0.0056 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9923 2.1598 -0.0004 29 1 5.1301 1.8119 -1.0261 30 1 4.6072 2.5330 0.5148 31 1 5.6508 1.0912 0.5159 32 1 5.6534 -3.0283 -1.2494 33 1 3.8736 -2.9974 -1.2491 34 1 4.7855 -1.7544 -2.1390 35 1 6.4963 -3.3299 0.8050 36 1 3.8869 -5.0429 2.1303 37 1 5.3296 -5.9025 1.5403 38 1 4.8952 -5.9733 3.2647 39 1 6.5651 -6.2915 5.5903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330630416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:48 Heat of formation + Delta-G solvation = 28.384297 kcal Electronic energy + Delta-G solvation = -20333.842435 eV Core-core repulsion = 17277.973820 eV Total energy + Delta-G solvation = -3055.868615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17707 -38.90479 -34.97982 -34.43689 -32.66529 -32.20583 -30.64921 -28.76652 -27.49404 -26.83859 -25.28346 -24.10370 -21.33690 -20.29156 -19.64894 -18.85838 -17.35789 -16.44877 -15.84963 -15.11352 -15.10708 -14.53134 -14.13567 -13.81547 -13.53224 -13.29846 -13.14241 -13.06911 -12.62872 -12.44092 -12.41137 -12.24996 -11.95909 -11.83444 -11.62465 -11.47341 -11.10804 -10.99484 -10.74763 -10.33398 -10.25990 -10.18462 -9.28994 -9.08509 -8.69751 -8.57182 -8.24750 -7.97260 -6.14889 -4.24974 2.06696 2.58317 3.00278 3.21960 3.23832 3.28947 3.30574 3.92608 4.33092 4.62101 4.67716 4.87399 5.00351 5.10593 5.17260 5.25769 5.40166 5.42061 5.51647 5.64125 5.69654 5.74694 5.80175 5.96198 6.01463 6.08981 6.37739 6.80593 6.92125 6.95854 7.12709 7.19043 7.40494 7.52476 7.65502 7.88165 8.02900 8.12028 8.57883 8.73639 9.03853 9.42500 10.91019 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.004457 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.066858 B = 6281.171960 C = 6602.947455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.058 3.942 3 C -0.274 4.274 4 C 0.079 3.921 5 C -0.092 4.092 6 N -0.345 5.345 7 C 0.137 3.863 8 H 0.119 0.881 9 C -0.153 4.153 10 C 0.492 3.508 11 O -0.525 6.525 12 N -0.706 5.706 13 C 0.267 3.733 14 H 0.047 0.953 15 C -0.146 4.146 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 N -0.262 5.262 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 11.980 -12.524 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C -0.304 4.304 4 C -0.048 4.048 5 C -0.151 4.151 6 N -0.128 5.128 7 C 0.031 3.969 8 H 0.136 0.864 9 C -0.211 4.211 10 C 0.274 3.726 11 O -0.401 6.401 12 N -0.355 5.355 13 C 0.165 3.835 14 H 0.065 0.935 15 C -0.205 4.205 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 N -0.083 5.083 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.220 0.780 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.109 0.891 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.699 10.536 -11.740 16.203 hybrid contribution 1.371 0.505 0.064 1.463 sum -2.328 11.041 -11.677 16.238 Atomic orbital electron populations 1.20099 0.87098 1.03083 1.02335 1.22276 0.96814 0.90934 1.00854 1.20990 0.90925 0.99411 1.19025 1.21038 0.97322 0.84472 1.01944 1.20449 0.93303 0.98344 1.02989 1.48082 1.04861 1.03320 1.56522 1.21281 0.85753 0.92919 0.96958 0.86358 1.22041 1.04447 0.99719 0.94898 1.20268 0.83745 0.81798 0.86780 1.90732 1.35006 1.68341 1.46003 1.46494 1.23614 1.38477 1.26902 1.18754 0.95991 0.87055 0.81662 0.93482 1.22068 0.96222 1.00215 1.02006 1.21194 0.91707 1.31969 1.12488 0.92046 1.24894 0.97519 0.95515 0.95757 1.69904 1.30499 1.34845 1.16707 0.86437 0.83991 0.78005 0.78590 1.20555 1.21036 1.19820 1.77408 0.85883 1.22224 1.22812 0.91050 0.91036 0.90827 0.84022 0.90348 0.89694 0.91163 0.89943 0.90557 0.91442 0.77952 0.96593 0.95434 0.89139 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.45 36.01 0.38 -0.41 16 2 C 0.06 0.92 7.22 -82.40 -0.59 0.33 16 3 C -0.27 -3.89 10.65 -40.01 -0.43 -4.31 16 4 C 0.08 1.14 6.93 -82.27 -0.57 0.57 16 5 C -0.09 -0.91 9.95 36.00 0.36 -0.55 16 6 N -0.35 -5.84 2.94 -51.81 -0.15 -5.99 16 7 C 0.14 2.11 3.45 -69.08 -0.24 1.87 16 8 H 0.12 1.42 6.67 -51.93 -0.35 1.08 16 9 C -0.15 -1.95 9.34 37.16 0.35 -1.60 16 10 C 0.49 10.13 7.16 -10.99 -0.08 10.06 16 11 O -0.53 -13.46 15.59 5.56 0.09 -13.37 16 12 N -0.71 -14.55 4.96 -54.93 -0.27 -14.82 16 13 C 0.27 6.83 2.56 -69.08 -0.18 6.66 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 16 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 20 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 N -0.26 -4.94 11.85 33.67 0.40 -4.54 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.68 7.10 -51.93 -0.37 0.31 16 32 H 0.08 0.89 7.56 -51.93 -0.39 0.50 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 6.66 7.96 -40.82 -0.32 6.34 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -34.23 328.83 -6.34 -40.57 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.91 Total: 5.52 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.05 Total: -3.45 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.60 Total: -49.68 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.23 -6.34 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330630416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.958 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds