Wall clock time and date at job start Mon Mar 30 2020 04:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39878 * 125.89831 * 2 1 4 4 C 1.35313 * 107.91935 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.12680 * 180.02562 * 4 3 2 6 6 N 1.34950 * 107.75018 * 0.02562 * 4 3 2 7 7 C 1.46501 * 126.03980 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47064 * 359.97438 * 7 6 4 9 9 C 1.53003 * 109.46754 * 239.99288 * 7 6 4 10 10 C 1.50698 * 109.47050 * 119.99483 * 7 6 4 11 11 O 1.21276 * 120.00239 * 0.02562 * 10 7 6 12 12 N 1.34779 * 119.99670 * 179.97438 * 10 7 6 13 13 C 1.46496 * 119.99965 * 179.97438 * 12 10 7 14 14 H 1.09001 * 109.47464 * 325.00834 * 13 12 10 15 15 C 1.53006 * 109.46995 * 85.00573 * 13 12 10 16 16 C 1.50699 * 109.47248 * 205.00258 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99908 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00364 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99946 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47247 * 89.99769 * 20 18 16 22 22 H 1.48496 * 109.47178 * 209.99766 * 20 18 16 23 23 H 1.48504 * 109.47095 * 329.99574 * 20 18 16 24 24 N 1.30842 * 125.90253 * 180.30411 * 2 1 3 25 25 H 1.08999 * 109.46897 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46665 * 210.00206 * 1 2 3 27 27 H 1.09005 * 109.46908 * 330.00032 * 1 2 3 28 28 H 1.07996 * 126.03988 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.47613 * 269.97988 * 5 4 3 30 30 H 1.09001 * 109.47049 * 29.97534 * 5 4 3 31 31 H 1.09000 * 109.47471 * 149.97252 * 5 4 3 32 32 H 1.08994 * 109.46826 * 179.97438 * 9 7 6 33 33 H 1.08999 * 109.47460 * 299.99910 * 9 7 6 34 34 H 1.09004 * 109.46709 * 60.00232 * 9 7 6 35 35 H 0.97003 * 120.00044 * 0.02562 * 12 10 7 36 36 H 1.09001 * 109.47002 * 299.99701 * 15 13 12 37 37 H 1.08993 * 109.46955 * 60.00138 * 15 13 12 38 38 H 1.09000 * 109.47050 * 179.97438 * 15 13 12 39 39 H 0.96999 * 120.00396 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6088 -0.6341 0.0004 7 6 4.7900 -1.5007 0.0003 8 1 5.6909 -0.8871 0.0000 9 6 4.7744 -2.3838 -1.2491 10 6 4.7747 -2.3707 1.2306 11 8 3.8665 -2.2766 2.0287 12 7 5.7700 -3.2543 1.4435 13 6 5.7555 -4.0997 2.6399 14 1 5.3315 -3.5412 3.4744 15 6 4.9056 -5.3440 2.3747 16 6 7.1639 -4.5160 2.9778 17 1 7.9874 -4.1838 2.3632 18 6 7.4010 -5.3212 4.0717 19 7 6.3983 -5.7254 4.8205 20 14 9.1468 -5.8367 4.4911 21 1 9.7515 -4.8370 5.4078 22 1 9.1250 -7.1657 5.1531 23 1 9.9519 -5.9172 3.2458 24 7 2.2743 -1.0598 -0.0056 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9923 2.1598 -0.0004 29 1 5.1301 1.8119 -1.0261 30 1 4.6072 2.5330 0.5148 31 1 5.6508 1.0912 0.5159 32 1 5.6534 -3.0283 -1.2494 33 1 3.8736 -2.9974 -1.2491 34 1 4.7855 -1.7544 -2.1390 35 1 6.4963 -3.3299 0.8050 36 1 3.8869 -5.0429 2.1303 37 1 5.3296 -5.9025 1.5403 38 1 4.8952 -5.9733 3.2647 39 1 6.5651 -6.2915 5.5903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330630416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:48 Heat of formation + Delta-G solvation = 4.472418 kcal Electronic energy + Delta-G solvation = -20334.879332 eV Core-core repulsion = 17277.973820 eV Total energy + Delta-G solvation = -3056.905511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32870 -40.55926 -36.83329 -35.78538 -34.38367 -33.43134 -31.82394 -30.57973 -28.53127 -27.80918 -27.37797 -25.45863 -23.05708 -21.42328 -21.32578 -20.20758 -18.91796 -17.79170 -17.63808 -16.92527 -16.34461 -16.07481 -15.72285 -14.98013 -14.81634 -14.56935 -14.43285 -14.08624 -13.98906 -13.87504 -13.57755 -13.34792 -13.20260 -13.00863 -12.98087 -12.92035 -12.82484 -12.74122 -12.48858 -12.29871 -12.13697 -11.32478 -11.15657 -10.88413 -10.62333 -9.93306 -9.84389 -9.37627 -8.19341 -6.38015 0.93675 1.44739 1.45703 1.48750 1.56761 1.64432 1.91084 2.30520 2.51665 3.11296 3.51413 3.71056 3.76170 3.82192 4.02755 4.20773 4.54232 4.58703 4.60782 4.69753 4.74862 4.80985 4.82771 4.86223 4.95044 5.03656 5.04528 5.07612 5.08680 5.36739 5.37576 5.55580 5.61862 5.81280 5.86886 6.04600 6.16678 6.69340 6.85625 6.89365 7.28800 7.46529 8.87264 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.004457 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.066858 B = 6281.171960 C = 6602.947455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.046 3.954 3 C -0.286 4.286 4 C 0.075 3.925 5 C -0.091 4.091 6 N -0.363 5.363 7 C 0.145 3.855 8 H 0.160 0.840 9 C -0.145 4.145 10 C 0.487 3.513 11 O -0.583 6.583 12 N -0.696 5.696 13 C 0.274 3.726 14 H -0.008 1.008 15 C -0.132 4.132 16 C -0.545 4.545 17 H 0.080 0.920 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.976 3.024 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.255 1.255 24 N -0.324 5.324 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.171 0.829 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.408 0.592 36 H 0.003 0.997 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 13.585 -14.466 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C -0.315 4.315 4 C -0.051 4.051 5 C -0.149 4.149 6 N -0.146 5.146 7 C 0.039 3.961 8 H 0.177 0.823 9 C -0.203 4.203 10 C 0.272 3.728 11 O -0.463 6.463 12 N -0.347 5.347 13 C 0.170 3.830 14 H 0.010 0.990 15 C -0.191 4.191 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.559 5.559 20 Si 0.800 3.200 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.179 1.179 24 N -0.146 5.146 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.188 0.812 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.245 0.755 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.511 12.159 -13.739 18.409 hybrid contribution 0.616 0.070 0.682 0.922 sum -0.894 12.229 -13.056 17.912 Atomic orbital electron populations 1.20228 0.84988 1.03473 1.03756 1.22999 0.98466 0.91119 0.99491 1.21429 0.90823 1.00312 1.18945 1.21879 0.99201 0.83936 1.00102 1.20636 0.91217 0.97956 1.05065 1.48241 1.04451 1.04392 1.57465 1.21393 0.87147 0.92950 0.94600 0.82300 1.22038 1.04004 0.99670 0.94553 1.21263 0.82232 0.81519 0.87755 1.90703 1.37096 1.69998 1.48507 1.46175 1.24602 1.38015 1.25876 1.18322 0.95764 0.86812 0.82053 0.98988 1.21886 0.95722 1.00089 1.01390 1.21535 0.92109 1.31794 1.12879 0.90203 1.25864 1.01814 0.95488 0.95587 1.70071 1.33002 1.35554 1.17243 0.85286 0.78690 0.77204 0.78804 1.20348 1.21192 1.17910 1.77333 0.87411 1.24389 1.25510 0.89036 0.92493 0.88501 0.81176 0.87511 0.88030 0.91016 0.87690 0.93488 0.88713 0.75537 0.97789 0.93695 0.91534 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.45 71.24 0.74 -0.77 16 2 C 0.05 1.45 7.22 43.10 0.31 1.76 16 3 C -0.29 -7.67 10.65 21.99 0.23 -7.43 16 4 C 0.08 2.02 6.93 41.40 0.29 2.30 16 5 C -0.09 -1.45 9.95 71.23 0.71 -0.75 16 6 N -0.36 -11.99 2.94 -317.84 -0.93 -12.92 16 7 C 0.14 4.25 3.45 44.25 0.15 4.40 16 8 H 0.16 3.29 6.67 -2.39 -0.02 3.27 16 9 C -0.14 -3.41 9.34 71.98 0.67 -2.73 16 10 C 0.49 20.30 7.16 87.66 0.63 20.93 16 11 O -0.58 -31.37 15.59 -3.02 -0.05 -31.42 16 12 N -0.70 -28.61 4.96 -446.10 -2.21 -30.83 16 13 C 0.27 14.41 2.56 44.25 0.11 14.52 16 14 H -0.01 -0.49 7.58 -2.39 -0.02 -0.51 16 15 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 16 C -0.55 -28.47 8.73 25.60 0.22 -28.25 16 17 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.01 0.66 5.30 84.66 0.45 1.11 16 19 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 20 Si 0.98 41.43 29.54 68.60 2.03 43.46 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 N -0.32 -12.50 11.85 -47.38 -0.56 -13.06 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.14 7.10 -2.39 -0.02 1.13 16 32 H 0.10 1.95 7.56 -2.39 -0.02 1.93 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 13.26 7.96 -92.71 -0.74 12.52 16 36 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 39 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -79.21 328.83 4.01 -75.20 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.31 Total: 23.88 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.19 Total: -1.18 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -3.47 Total: -109.94 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -79.21 4.01 -75.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330630416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.674 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds