Wall clock time and date at job start Mon Mar 30 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39874 * 125.90027 * 2 1 4 4 C 1.35310 * 107.92070 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.12682 * 180.02562 * 4 3 2 6 6 N 1.34945 * 107.74545 * 0.02562 * 4 3 2 7 7 C 1.46509 * 126.03759 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46564 * 359.97438 * 7 6 4 9 9 C 1.52995 * 109.47156 * 239.99939 * 7 6 4 10 10 C 1.50698 * 109.47002 * 119.99541 * 7 6 4 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 7 6 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 7 14 14 H 1.08999 * 109.47480 * 35.27807 * 13 12 10 15 15 C 1.52999 * 109.47136 * 275.27771 * 13 12 10 16 16 C 1.50696 * 109.47278 * 155.27952 * 13 12 10 17 17 H 1.08002 * 120.00157 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00447 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99635 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 120.00210 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.47150 * 60.00100 * 20 18 16 22 22 H 1.48498 * 109.47193 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47405 * 300.00440 * 20 18 16 24 24 N 1.30835 * 125.89952 * 180.29428 * 2 1 3 25 25 H 1.09001 * 109.46868 * 90.00175 * 1 2 3 26 26 H 1.08996 * 109.47177 * 210.00610 * 1 2 3 27 27 H 1.09005 * 109.46939 * 330.00460 * 1 2 3 28 28 H 1.08005 * 126.03507 * 359.97438 * 3 2 1 29 29 H 1.08993 * 109.47101 * 269.97615 * 5 4 3 30 30 H 1.08998 * 109.47032 * 29.97709 * 5 4 3 31 31 H 1.09001 * 109.46916 * 149.97802 * 5 4 3 32 32 H 1.08995 * 109.47139 * 300.00065 * 9 7 6 33 33 H 1.09003 * 109.47199 * 59.99888 * 9 7 6 34 34 H 1.09001 * 109.46983 * 179.97438 * 9 7 6 35 35 H 0.97001 * 120.00485 * 0.02562 * 12 10 7 36 36 H 1.09006 * 109.47500 * 299.99940 * 15 13 12 37 37 H 1.08999 * 109.47488 * 60.00276 * 15 13 12 38 38 H 1.09005 * 109.47368 * 180.02562 * 15 13 12 39 39 H 0.97000 * 120.00295 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8351 1.5989 0.0013 6 7 3.6087 -0.6341 0.0004 7 6 4.7899 -1.5008 0.0003 8 1 5.6908 -0.8872 0.0000 9 6 4.7744 -2.3838 -1.2491 10 6 4.7746 -2.3709 1.2306 11 8 3.8663 -2.2767 2.0288 12 7 5.7698 -3.2545 1.4435 13 6 5.7580 -4.0960 2.6426 14 1 4.7304 -4.3630 2.8891 15 6 6.3797 -3.3281 3.8108 16 6 6.5545 -5.3491 2.3847 17 1 7.0223 -5.5034 1.4236 18 6 6.6860 -6.2986 3.3758 19 7 6.1168 -6.1105 4.5463 20 14 7.6726 -7.8521 3.0558 21 1 9.0727 -7.4888 2.7190 22 1 7.6608 -8.7051 4.2713 23 1 7.0685 -8.5977 1.9225 24 7 2.2742 -1.0598 -0.0054 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 5.1302 1.8117 -1.0261 30 1 4.6073 2.5330 0.5148 31 1 5.6508 1.0910 0.5158 32 1 3.8736 -2.9974 -1.2492 33 1 4.7855 -1.7545 -2.1390 34 1 5.6535 -3.0284 -1.2493 35 1 6.4961 -3.3301 0.8050 36 1 7.4074 -3.0611 3.5644 37 1 5.8036 -2.4217 3.9974 38 1 6.3713 -3.9544 4.7029 39 1 6.2090 -6.7787 5.2434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330630419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:54 Heat of formation + Delta-G solvation = 28.534044 kcal Electronic energy + Delta-G solvation = -20330.601324 eV Core-core repulsion = 17274.739202 eV Total energy + Delta-G solvation = -3055.862121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17874 -38.90380 -34.98345 -34.43328 -32.66455 -32.20675 -30.65099 -28.76632 -27.47977 -26.84351 -25.29966 -24.11134 -21.31770 -20.29192 -19.65783 -18.86120 -17.36604 -16.42836 -15.83449 -15.22579 -15.02242 -14.58025 -14.07394 -13.69177 -13.60460 -13.29761 -13.21655 -13.05263 -12.70355 -12.42937 -12.38522 -12.19988 -11.91260 -11.83500 -11.69067 -11.45078 -11.11979 -10.96702 -10.76758 -10.35838 -10.26118 -10.17806 -9.28868 -9.09234 -8.69426 -8.57505 -8.24987 -7.97098 -6.14253 -4.24200 2.06708 2.58313 3.00399 3.22644 3.24368 3.29652 3.30743 3.93088 4.33409 4.61964 4.67002 4.88157 4.99859 5.10620 5.17753 5.25849 5.39122 5.42028 5.53449 5.65223 5.70270 5.73516 5.80476 5.96543 6.01958 6.11332 6.37698 6.77946 6.91251 6.92219 7.10694 7.18742 7.39760 7.51851 7.65406 7.87650 8.03201 8.11519 8.57861 8.74082 9.03853 9.43116 10.91714 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.004397 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.507339 B = 6367.045981 C = 6504.159636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.058 3.942 3 C -0.274 4.274 4 C 0.078 3.922 5 C -0.092 4.092 6 N -0.345 5.345 7 C 0.138 3.862 8 H 0.118 0.882 9 C -0.153 4.153 10 C 0.492 3.508 11 O -0.525 6.525 12 N -0.705 5.705 13 C 0.267 3.733 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.261 5.261 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.013 0.987 38 H 0.091 0.909 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 13.566 -11.365 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C -0.303 4.303 4 C -0.049 4.049 5 C -0.150 4.150 6 N -0.128 5.128 7 C 0.031 3.969 8 H 0.136 0.864 9 C -0.211 4.211 10 C 0.274 3.726 11 O -0.401 6.401 12 N -0.355 5.355 13 C 0.165 3.835 14 H 0.066 0.934 15 C -0.205 4.205 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 N -0.082 5.082 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.220 0.780 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.109 0.891 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.505 12.144 -10.560 16.287 hybrid contribution 1.005 0.002 -0.311 1.052 sum -1.500 12.146 -10.871 16.369 Atomic orbital electron populations 1.20100 0.87092 1.03086 1.02348 1.22278 0.96825 0.90925 1.00861 1.20989 0.90924 0.99407 1.19017 1.21033 0.97313 0.84479 1.02034 1.20444 0.93282 0.98323 1.02987 1.48088 1.04878 1.03306 1.56506 1.21282 0.85704 0.92876 0.97021 0.86424 1.22045 1.04586 0.99702 0.94814 1.20271 0.83640 0.81969 0.86710 1.90733 1.35215 1.67864 1.46268 1.46490 1.23819 1.38420 1.26746 1.18751 0.98179 0.86985 0.79552 0.93377 1.22083 0.97522 0.98260 1.02678 1.21152 1.33694 1.02993 0.99496 0.92080 1.24890 0.95531 0.98401 0.94847 1.69891 1.43146 1.35175 1.03811 0.86491 0.80275 0.82492 0.77729 1.20145 1.21104 1.20147 1.77420 0.85874 1.22211 1.22737 0.91042 0.91017 0.90835 0.84028 0.90348 0.89706 0.91227 0.90487 0.91481 0.89878 0.77957 0.95434 0.96802 0.89053 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 36.01 0.38 -0.42 16 2 C 0.06 0.92 7.22 -82.40 -0.59 0.33 16 3 C -0.27 -3.88 10.65 -40.01 -0.43 -4.30 16 4 C 0.08 1.12 6.93 -82.27 -0.57 0.55 16 5 C -0.09 -0.89 9.95 36.01 0.36 -0.53 16 6 N -0.35 -5.84 2.94 -51.81 -0.15 -5.99 16 7 C 0.14 2.12 3.44 -69.08 -0.24 1.88 16 8 H 0.12 1.40 6.67 -51.93 -0.35 1.05 16 9 C -0.15 -1.99 9.34 37.16 0.35 -1.65 16 10 C 0.49 10.14 7.16 -10.99 -0.08 10.06 16 11 O -0.52 -13.47 15.59 5.55 0.09 -13.38 16 12 N -0.71 -14.55 4.96 -54.94 -0.27 -14.82 16 13 C 0.27 6.83 2.56 -69.09 -0.18 6.66 16 14 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 15 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 16 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -25.00 11.32 55.43 0.63 -24.37 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 N -0.26 -4.95 11.85 33.67 0.40 -4.55 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.66 7.10 -51.93 -0.37 0.29 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.92 7.56 -51.93 -0.39 0.53 16 35 H 0.39 6.66 7.96 -40.82 -0.32 6.33 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -34.27 328.82 -6.34 -40.61 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.91 Total: 5.47 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.05 Total: -3.46 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.60 Total: -49.74 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.27 -6.34 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330630419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.146 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds