Wall clock time and date at job start Mon Mar 30 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39874 * 125.90027 * 2 1 4 4 C 1.35310 * 107.92070 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.12682 * 180.02562 * 4 3 2 6 6 N 1.34945 * 107.74545 * 0.02562 * 4 3 2 7 7 C 1.46509 * 126.03759 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46564 * 359.97438 * 7 6 4 9 9 C 1.52995 * 109.47156 * 239.99939 * 7 6 4 10 10 C 1.50698 * 109.47002 * 119.99541 * 7 6 4 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 7 6 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 7 14 14 H 1.08999 * 109.47480 * 35.27807 * 13 12 10 15 15 C 1.52999 * 109.47136 * 275.27771 * 13 12 10 16 16 C 1.50696 * 109.47278 * 155.27952 * 13 12 10 17 17 H 1.08002 * 120.00157 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00447 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99635 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 120.00210 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.47150 * 60.00100 * 20 18 16 22 22 H 1.48498 * 109.47193 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47405 * 300.00440 * 20 18 16 24 24 N 1.30835 * 125.89952 * 180.29428 * 2 1 3 25 25 H 1.09001 * 109.46868 * 90.00175 * 1 2 3 26 26 H 1.08996 * 109.47177 * 210.00610 * 1 2 3 27 27 H 1.09005 * 109.46939 * 330.00460 * 1 2 3 28 28 H 1.08005 * 126.03507 * 359.97438 * 3 2 1 29 29 H 1.08993 * 109.47101 * 269.97615 * 5 4 3 30 30 H 1.08998 * 109.47032 * 29.97709 * 5 4 3 31 31 H 1.09001 * 109.46916 * 149.97802 * 5 4 3 32 32 H 1.08995 * 109.47139 * 300.00065 * 9 7 6 33 33 H 1.09003 * 109.47199 * 59.99888 * 9 7 6 34 34 H 1.09001 * 109.46983 * 179.97438 * 9 7 6 35 35 H 0.97001 * 120.00485 * 0.02562 * 12 10 7 36 36 H 1.09006 * 109.47500 * 299.99940 * 15 13 12 37 37 H 1.08999 * 109.47488 * 60.00276 * 15 13 12 38 38 H 1.09005 * 109.47368 * 180.02562 * 15 13 12 39 39 H 0.97000 * 120.00295 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8351 1.5989 0.0013 6 7 3.6087 -0.6341 0.0004 7 6 4.7899 -1.5008 0.0003 8 1 5.6908 -0.8872 0.0000 9 6 4.7744 -2.3838 -1.2491 10 6 4.7746 -2.3709 1.2306 11 8 3.8663 -2.2767 2.0288 12 7 5.7698 -3.2545 1.4435 13 6 5.7580 -4.0960 2.6426 14 1 4.7304 -4.3630 2.8891 15 6 6.3797 -3.3281 3.8108 16 6 6.5545 -5.3491 2.3847 17 1 7.0223 -5.5034 1.4236 18 6 6.6860 -6.2986 3.3758 19 7 6.1168 -6.1105 4.5463 20 14 7.6726 -7.8521 3.0558 21 1 9.0727 -7.4888 2.7190 22 1 7.6608 -8.7051 4.2713 23 1 7.0685 -8.5977 1.9225 24 7 2.2742 -1.0598 -0.0054 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 5.1302 1.8117 -1.0261 30 1 4.6073 2.5330 0.5148 31 1 5.6508 1.0910 0.5158 32 1 3.8736 -2.9974 -1.2492 33 1 4.7855 -1.7545 -2.1390 34 1 5.6535 -3.0284 -1.2493 35 1 6.4961 -3.3301 0.8050 36 1 7.4074 -3.0611 3.5644 37 1 5.8036 -2.4217 3.9974 38 1 6.3713 -3.9544 4.7029 39 1 6.2090 -6.7787 5.2434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330630419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:54 Heat of formation + Delta-G solvation = 4.521511 kcal Electronic energy + Delta-G solvation = -20331.642585 eV Core-core repulsion = 17274.739202 eV Total energy + Delta-G solvation = -3056.903383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32987 -40.55748 -36.83272 -35.78614 -34.38339 -33.43395 -31.82765 -30.56511 -28.52602 -27.80790 -27.38223 -25.48010 -23.02463 -21.44931 -21.30929 -20.20629 -18.93167 -17.76611 -17.60572 -17.00240 -16.34029 -16.13331 -15.52747 -15.11907 -14.79636 -14.57729 -14.43859 -14.10187 -13.97862 -13.81264 -13.59473 -13.35411 -13.19958 -13.04517 -12.97178 -12.89241 -12.80325 -12.73819 -12.49635 -12.29356 -12.16912 -11.31975 -11.16258 -10.88252 -10.61663 -9.94658 -9.83036 -9.37535 -8.19356 -6.37864 0.93998 1.44051 1.46862 1.48729 1.54782 1.64317 1.91219 2.31128 2.51141 3.11235 3.51330 3.71140 3.76145 3.82101 4.02443 4.21000 4.54357 4.58776 4.60497 4.70366 4.75308 4.81162 4.82583 4.85580 4.94982 5.03683 5.04309 5.07870 5.08681 5.37144 5.38090 5.55327 5.62496 5.81481 5.87442 6.05277 6.17100 6.69095 6.85766 6.89605 7.28778 7.46594 8.86966 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.004397 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.507339 B = 6367.045981 C = 6504.159636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.046 3.954 3 C -0.286 4.286 4 C 0.076 3.924 5 C -0.090 4.090 6 N -0.362 5.362 7 C 0.145 3.855 8 H 0.162 0.838 9 C -0.146 4.146 10 C 0.487 3.513 11 O -0.583 6.583 12 N -0.696 5.696 13 C 0.273 3.727 14 H -0.011 1.011 15 C -0.132 4.132 16 C -0.547 4.547 17 H 0.078 0.922 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.975 3.025 21 H -0.260 1.260 22 H -0.288 1.288 23 H -0.271 1.271 24 N -0.326 5.326 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.408 0.592 36 H 0.047 0.953 37 H 0.006 0.994 38 H 0.066 0.934 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 14.907 -13.502 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C -0.315 4.315 4 C -0.051 4.051 5 C -0.148 4.148 6 N -0.145 5.145 7 C 0.040 3.960 8 H 0.179 0.821 9 C -0.203 4.203 10 C 0.272 3.728 11 O -0.463 6.463 12 N -0.347 5.347 13 C 0.170 3.830 14 H 0.007 0.993 15 C -0.191 4.191 16 C -0.585 4.585 17 H 0.096 0.904 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.799 3.201 21 H -0.184 1.184 22 H -0.214 1.214 23 H -0.196 1.196 24 N -0.148 5.148 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.189 0.811 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.245 0.755 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.084 0.916 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.530 13.508 -12.749 18.582 hybrid contribution 0.322 -0.345 0.368 0.599 sum -0.208 13.163 -12.381 18.072 Atomic orbital electron populations 1.20229 0.85030 1.03466 1.03741 1.22996 0.98456 0.91140 0.99490 1.21430 0.90829 1.00288 1.18958 1.21889 0.99220 0.83892 1.00068 1.20639 0.91182 0.97945 1.05072 1.48240 1.04421 1.04411 1.57466 1.21393 0.87198 0.92913 0.94526 0.82087 1.22039 1.03946 0.99676 0.94682 1.21265 0.82135 0.81659 0.87722 1.90704 1.37255 1.69559 1.48786 1.46174 1.24830 1.37850 1.25806 1.18320 0.94794 0.88210 0.81680 0.99274 1.21887 0.98407 0.97226 1.01560 1.21506 1.33502 1.03235 1.00220 0.90359 1.25848 0.96517 1.01830 0.94495 1.70060 1.44561 1.36317 1.04863 0.85350 0.79261 0.78061 0.77382 1.18422 1.21374 1.19637 1.77344 0.87483 1.24447 1.25531 0.89066 0.92550 0.88449 0.81144 0.87547 0.87998 0.90911 0.93680 0.88670 0.87749 0.75543 0.93437 0.97462 0.91562 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 10.45 71.24 0.74 -0.79 16 2 C 0.05 1.45 7.22 43.10 0.31 1.76 16 3 C -0.29 -7.63 10.65 21.99 0.23 -7.40 16 4 C 0.08 2.01 6.93 41.40 0.29 2.30 16 5 C -0.09 -1.40 9.95 71.24 0.71 -0.69 16 6 N -0.36 -11.98 2.94 -317.83 -0.93 -12.92 16 7 C 0.15 4.26 3.44 44.24 0.15 4.41 16 8 H 0.16 3.24 6.67 -2.39 -0.02 3.22 16 9 C -0.15 -3.52 9.34 71.98 0.67 -2.85 16 10 C 0.49 20.30 7.16 87.66 0.63 20.93 16 11 O -0.58 -31.38 15.59 -3.04 -0.05 -31.42 16 12 N -0.70 -28.62 4.96 -446.11 -2.21 -30.84 16 13 C 0.27 14.39 2.56 44.24 0.11 14.50 16 14 H -0.01 -0.68 7.58 -2.39 -0.02 -0.70 16 15 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 16 C -0.55 -28.77 8.73 25.60 0.22 -28.54 16 17 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 18 C 0.01 0.70 5.30 84.66 0.45 1.15 16 19 N -0.92 -53.44 11.32 21.45 0.24 -53.20 16 20 Si 0.98 41.77 29.54 68.60 2.03 43.79 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 N -0.33 -12.67 11.85 -47.38 -0.56 -13.23 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.10 7.10 -2.39 -0.02 1.08 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 2.02 7.56 -2.39 -0.02 2.01 16 35 H 0.41 13.26 7.96 -92.71 -0.74 12.53 16 36 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.07 3.74 6.07 -2.38 -0.01 3.72 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -79.62 328.82 4.01 -75.61 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.31 Total: 23.52 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.19 Total: -1.32 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.47 Total: -110.18 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -79.62 4.01 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330630419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.131 kcal (2) G-P(sol) polarization free energy of solvation -79.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds