Wall clock time and date at job start Mon Mar 30 2020 04:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39869 * 125.90050 * 2 1 4 4 C 1.35313 * 107.92352 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.12885 * 180.02562 * 4 3 2 6 6 N 1.34951 * 107.74481 * 0.02562 * 4 3 2 7 7 C 1.46496 * 126.03845 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.46844 * 359.97438 * 7 6 4 9 9 C 1.52999 * 109.46879 * 239.99964 * 7 6 4 10 10 C 1.50700 * 109.47623 * 119.99642 * 7 6 4 11 11 O 1.21280 * 119.99443 * 5.47166 * 10 7 6 12 12 N 1.34774 * 120.00192 * 185.47358 * 10 7 6 13 13 C 1.46502 * 120.00109 * 4.88419 * 12 10 7 14 14 C 1.46498 * 119.99982 * 184.88783 * 12 10 7 15 15 C 1.50701 * 109.47209 * 89.99640 * 14 12 10 16 16 H 1.08005 * 119.99708 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00186 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47280 * 59.99527 * 19 17 15 21 21 H 1.48501 * 109.47330 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46844 * 299.99868 * 19 17 15 23 23 N 1.30841 * 125.90006 * 180.31019 * 2 1 3 24 24 H 1.09007 * 109.47339 * 89.99785 * 1 2 3 25 25 H 1.09002 * 109.46808 * 209.99322 * 1 2 3 26 26 H 1.08998 * 109.47474 * 329.99590 * 1 2 3 27 27 H 1.08001 * 126.03429 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47517 * 269.97853 * 5 4 3 29 29 H 1.08999 * 109.47162 * 29.97648 * 5 4 3 30 30 H 1.09001 * 109.47419 * 149.97729 * 5 4 3 31 31 H 1.09001 * 109.47394 * 310.25908 * 9 7 6 32 32 H 1.08999 * 109.47657 * 70.26022 * 9 7 6 33 33 H 1.09004 * 109.47169 * 190.26011 * 9 7 6 34 34 H 1.09001 * 109.47267 * 95.81430 * 13 12 10 35 35 H 1.08992 * 109.47210 * 215.81813 * 13 12 10 36 36 H 1.09005 * 109.46967 * 335.82141 * 13 12 10 37 37 H 1.08995 * 109.47066 * 209.99596 * 14 12 10 38 38 H 1.08996 * 109.47125 * 329.99950 * 14 12 10 39 39 H 0.97001 * 120.00726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6087 -0.6341 0.0004 7 6 4.7898 -1.5008 0.0003 8 1 5.6907 -0.8872 0.0000 9 6 4.7743 -2.3838 -1.2491 10 6 4.7747 -2.3709 1.2306 11 8 3.8194 -2.3483 1.9774 12 7 5.8226 -3.1741 1.5009 13 6 7.0207 -3.1234 0.6593 14 6 5.7636 -4.0980 2.6364 15 6 5.1931 -5.4167 2.1819 16 1 4.9038 -5.5531 1.1503 17 6 5.0404 -6.4490 3.0830 18 7 5.3932 -6.2831 4.3390 19 14 4.3339 -8.0839 2.5195 20 1 5.2002 -8.6584 1.4590 21 1 4.2740 -9.0203 3.6705 22 1 2.9661 -7.8726 1.9808 23 7 2.2742 -1.0598 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8899 0.5139 27 1 1.9922 2.1598 0.0004 28 1 5.1301 1.8118 -1.0261 29 1 4.6072 2.5330 0.5148 30 1 5.6508 1.0910 0.5158 31 1 3.7986 -2.8599 -1.3455 32 1 4.9682 -1.7711 -2.1296 33 1 5.5452 -3.1495 -1.1625 34 1 7.7581 -2.4636 1.1164 35 1 7.4396 -4.1250 0.5629 36 1 6.7557 -2.7438 -0.3275 37 1 6.7677 -4.2532 3.0310 38 1 5.1283 -3.6764 3.4152 39 1 5.2855 -7.0093 4.9731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330643683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:40 Heat of formation + Delta-G solvation = 47.089381 kcal Electronic energy + Delta-G solvation = -20596.336988 eV Core-core repulsion = 17541.279487 eV Total energy + Delta-G solvation = -3055.057501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16905 -39.04626 -34.92898 -34.56533 -32.75161 -32.25721 -30.58867 -27.96518 -27.35093 -26.82865 -26.08905 -24.06452 -22.38009 -20.26450 -19.58364 -18.23826 -16.59563 -16.53829 -16.36827 -15.14497 -15.02204 -14.61038 -14.19981 -14.00248 -13.57958 -13.27426 -13.25529 -12.98734 -12.85738 -12.48665 -12.36377 -12.27679 -12.06821 -11.82021 -11.78242 -11.44063 -11.35455 -11.16933 -10.88179 -10.57665 -10.17973 -10.11368 -9.66661 -9.20451 -8.62518 -8.44414 -8.21762 -7.70703 -6.05484 -4.10623 2.09881 2.61004 3.03996 3.23353 3.31760 3.36290 3.40885 3.86141 4.42831 4.61860 4.68066 4.87653 4.91683 5.04844 5.12831 5.29055 5.39020 5.39798 5.44988 5.60451 5.62080 5.74053 5.74326 5.81329 5.84611 5.99122 6.05897 6.09088 6.23227 6.41317 6.93449 6.98215 7.24664 7.40578 7.48347 7.90344 8.07528 8.20600 8.30566 8.85728 9.00707 9.54491 11.02670 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.005407 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.770893 B = 5176.782078 C = 5769.156292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.057 3.943 3 C -0.273 4.273 4 C 0.075 3.925 5 C -0.091 4.091 6 N -0.346 5.346 7 C 0.141 3.859 8 H 0.115 0.885 9 C -0.163 4.163 10 C 0.496 3.504 11 O -0.511 6.511 12 N -0.600 5.600 13 C 0.066 3.934 14 C 0.247 3.753 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 N -0.256 5.256 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 14.718 -11.928 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C -0.303 4.303 4 C -0.051 4.051 5 C -0.150 4.150 6 N -0.129 5.129 7 C 0.034 3.966 8 H 0.133 0.867 9 C -0.221 4.221 10 C 0.280 3.720 11 O -0.385 6.385 12 N -0.334 5.334 13 C -0.078 4.078 14 C 0.128 3.872 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 N -0.077 5.077 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.571 13.246 -11.315 17.430 hybrid contribution -0.192 -0.130 -0.175 0.291 sum 0.379 13.115 -11.490 17.441 Atomic orbital electron populations 1.20099 0.87103 1.03098 1.02340 1.22291 0.96850 0.90916 1.00969 1.20986 0.90911 0.99389 1.18979 1.21031 0.97310 0.84480 1.02314 1.20433 0.93258 0.98295 1.02966 1.48113 1.04952 1.03280 1.56543 1.21229 0.85422 0.92784 0.97151 0.86726 1.22263 1.05320 0.99892 0.94614 1.20154 0.83874 0.81575 0.86428 1.90742 1.33153 1.66020 1.48603 1.48101 1.14258 1.39135 1.31857 1.21988 0.88239 1.03151 0.94393 1.19300 0.97870 0.86751 0.83246 1.21377 1.42547 0.96806 0.95979 0.92481 1.24927 0.95337 0.99008 0.94735 1.69919 1.47694 1.33066 1.02671 0.86553 0.79836 0.82945 0.78072 1.20215 1.21123 1.20120 1.77485 0.85805 1.22092 1.22351 0.91058 0.90969 0.90859 0.84036 0.90363 0.89717 0.91326 0.90261 0.91482 0.88997 0.93426 0.90505 0.91455 0.94830 0.93805 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.45 36.00 0.38 -0.47 16 2 C 0.06 0.94 7.22 -82.41 -0.59 0.34 16 3 C -0.27 -3.96 10.65 -40.01 -0.43 -4.39 16 4 C 0.08 1.10 6.93 -82.27 -0.57 0.53 16 5 C -0.09 -0.88 9.95 36.00 0.36 -0.52 16 6 N -0.35 -6.08 2.98 -51.82 -0.15 -6.24 16 7 C 0.14 2.27 2.61 -69.08 -0.18 2.09 16 8 H 0.12 1.42 6.27 -51.93 -0.33 1.09 16 9 C -0.16 -2.29 8.92 37.16 0.33 -1.96 16 10 C 0.50 10.79 7.04 -10.99 -0.08 10.71 16 11 O -0.51 -13.86 15.39 5.56 0.09 -13.77 16 12 N -0.60 -12.73 2.85 -182.96 -0.52 -13.25 16 13 C 0.07 0.99 9.72 59.85 0.58 1.57 16 14 C 0.25 6.55 5.23 -5.19 -0.03 6.52 16 15 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 16 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.26 -5.08 11.64 33.67 0.39 -4.69 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.64 7.10 -51.93 -0.37 0.27 16 31 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.20 5.41 -51.93 -0.28 0.92 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 36 H 0.07 0.79 4.12 -51.93 -0.21 0.57 16 37 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.04 1.33 7.36 -51.93 -0.38 0.94 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -36.97 326.19 -5.97 -42.94 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.75 Total: -1.55 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.65 Total: 0.67 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.45 Total: -50.35 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.97 -5.97 -42.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330643683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.032 kcal (2) G-P(sol) polarization free energy of solvation -36.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds