Wall clock time and date at job start Mon Mar 30 2020 04:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39869 * 125.90050 * 2 1 4 4 C 1.35313 * 107.92352 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.12885 * 180.02562 * 4 3 2 6 6 N 1.34951 * 107.74481 * 0.02562 * 4 3 2 7 7 C 1.46496 * 126.03845 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.46844 * 359.97438 * 7 6 4 9 9 C 1.52999 * 109.46879 * 239.99964 * 7 6 4 10 10 C 1.50700 * 109.47623 * 119.99642 * 7 6 4 11 11 O 1.21280 * 119.99443 * 5.47166 * 10 7 6 12 12 N 1.34774 * 120.00192 * 185.47358 * 10 7 6 13 13 C 1.46502 * 120.00109 * 4.88419 * 12 10 7 14 14 C 1.46498 * 119.99982 * 184.88783 * 12 10 7 15 15 C 1.50701 * 109.47209 * 89.99640 * 14 12 10 16 16 H 1.08005 * 119.99708 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00186 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47280 * 59.99527 * 19 17 15 21 21 H 1.48501 * 109.47330 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46844 * 299.99868 * 19 17 15 23 23 N 1.30841 * 125.90006 * 180.31019 * 2 1 3 24 24 H 1.09007 * 109.47339 * 89.99785 * 1 2 3 25 25 H 1.09002 * 109.46808 * 209.99322 * 1 2 3 26 26 H 1.08998 * 109.47474 * 329.99590 * 1 2 3 27 27 H 1.08001 * 126.03429 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47517 * 269.97853 * 5 4 3 29 29 H 1.08999 * 109.47162 * 29.97648 * 5 4 3 30 30 H 1.09001 * 109.47419 * 149.97729 * 5 4 3 31 31 H 1.09001 * 109.47394 * 310.25908 * 9 7 6 32 32 H 1.08999 * 109.47657 * 70.26022 * 9 7 6 33 33 H 1.09004 * 109.47169 * 190.26011 * 9 7 6 34 34 H 1.09001 * 109.47267 * 95.81430 * 13 12 10 35 35 H 1.08992 * 109.47210 * 215.81813 * 13 12 10 36 36 H 1.09005 * 109.46967 * 335.82141 * 13 12 10 37 37 H 1.08995 * 109.47066 * 209.99596 * 14 12 10 38 38 H 1.08996 * 109.47125 * 329.99950 * 14 12 10 39 39 H 0.97001 * 120.00726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6087 -0.6341 0.0004 7 6 4.7898 -1.5008 0.0003 8 1 5.6907 -0.8872 0.0000 9 6 4.7743 -2.3838 -1.2491 10 6 4.7747 -2.3709 1.2306 11 8 3.8194 -2.3483 1.9774 12 7 5.8226 -3.1741 1.5009 13 6 7.0207 -3.1234 0.6593 14 6 5.7636 -4.0980 2.6364 15 6 5.1931 -5.4167 2.1819 16 1 4.9038 -5.5531 1.1503 17 6 5.0404 -6.4490 3.0830 18 7 5.3932 -6.2831 4.3390 19 14 4.3339 -8.0839 2.5195 20 1 5.2002 -8.6584 1.4590 21 1 4.2740 -9.0203 3.6705 22 1 2.9661 -7.8726 1.9808 23 7 2.2742 -1.0598 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8899 0.5139 27 1 1.9922 2.1598 0.0004 28 1 5.1301 1.8118 -1.0261 29 1 4.6072 2.5330 0.5148 30 1 5.6508 1.0910 0.5158 31 1 3.7986 -2.8599 -1.3455 32 1 4.9682 -1.7711 -2.1296 33 1 5.5452 -3.1495 -1.1625 34 1 7.7581 -2.4636 1.1164 35 1 7.4396 -4.1250 0.5629 36 1 6.7557 -2.7438 -0.3275 37 1 6.7677 -4.2532 3.0310 38 1 5.1283 -3.6764 3.4152 39 1 5.2855 -7.0093 4.9731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330643683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:40 Heat of formation + Delta-G solvation = 20.957434 kcal Electronic energy + Delta-G solvation = -20597.470155 eV Core-core repulsion = 17541.279487 eV Total energy + Delta-G solvation = -3056.190668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35785 -40.66584 -36.72774 -35.91412 -34.69904 -33.43352 -31.73827 -29.76979 -28.56739 -27.82078 -27.54491 -25.80507 -24.01331 -21.39484 -21.00963 -19.59100 -18.72781 -17.97257 -17.85088 -16.86174 -16.42954 -16.12830 -15.91170 -15.15560 -14.73675 -14.52018 -14.37260 -14.24367 -14.06038 -13.83694 -13.64056 -13.50440 -13.33182 -13.21207 -13.12000 -12.93688 -12.83812 -12.66783 -12.53200 -12.34544 -12.20407 -11.75361 -11.29338 -10.78681 -10.68540 -9.92708 -9.50120 -9.37361 -8.26980 -6.41977 0.94479 1.32505 1.37582 1.44284 1.47546 1.62953 1.91674 2.26393 2.38386 3.02831 3.41289 3.54892 3.72616 3.78293 4.00271 4.19825 4.24494 4.52642 4.55752 4.58484 4.67887 4.76335 4.80290 4.81724 4.89242 4.92340 4.96101 5.05409 5.08658 5.12538 5.16827 5.38140 5.48787 5.75858 5.84472 6.00441 6.16815 6.62112 6.68374 6.90534 7.21386 7.36369 8.80205 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.005407 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.770893 B = 5176.782078 C = 5769.156292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.044 3.956 3 C -0.285 4.285 4 C 0.075 3.925 5 C -0.090 4.090 6 N -0.364 5.364 7 C 0.150 3.850 8 H 0.163 0.837 9 C -0.156 4.156 10 C 0.485 3.515 11 O -0.580 6.580 12 N -0.604 5.604 13 C 0.058 3.942 14 C 0.261 3.739 15 C -0.545 4.545 16 H 0.053 0.947 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.967 3.033 20 H -0.256 1.256 21 H -0.276 1.276 22 H -0.283 1.283 23 N -0.326 5.326 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.172 0.828 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.030 0.970 38 H -0.008 1.008 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 16.141 -14.334 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C -0.314 4.314 4 C -0.051 4.051 5 C -0.148 4.148 6 N -0.147 5.147 7 C 0.044 3.956 8 H 0.180 0.820 9 C -0.213 4.213 10 C 0.271 3.729 11 O -0.459 6.459 12 N -0.336 5.336 13 C -0.083 4.083 14 C 0.140 3.860 15 C -0.583 4.583 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.791 3.209 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.208 1.208 23 N -0.148 5.148 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.190 0.810 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.048 0.952 38 H 0.010 0.990 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.937 14.686 -13.767 20.223 hybrid contribution -0.601 -0.486 0.602 0.980 sum 1.336 14.200 -13.165 19.410 Atomic orbital electron populations 1.20228 0.85130 1.03403 1.03730 1.23006 0.98443 0.91199 0.99579 1.21434 0.90804 1.00242 1.18934 1.21933 0.99321 0.83762 1.00103 1.20649 0.91053 0.97887 1.05187 1.48238 1.04394 1.04468 1.57563 1.21337 0.87095 0.92815 0.94351 0.82031 1.22258 1.03692 1.00301 0.95086 1.21273 0.82570 0.81555 0.87463 1.90700 1.35653 1.68330 1.51251 1.48097 1.16402 1.37893 1.31170 1.22364 0.86348 1.04030 0.95573 1.18744 0.96097 0.86947 0.84203 1.21656 1.42829 0.97925 0.95899 0.92886 1.25855 0.95506 1.02939 0.94769 1.70039 1.48572 1.34347 1.03795 0.85488 0.78692 0.78424 0.78337 1.17972 1.20116 1.20843 1.77404 0.87571 1.24505 1.25334 0.89051 0.92774 0.88337 0.81013 0.87403 0.87929 0.90809 0.93744 0.87463 0.87989 0.90441 0.90988 0.87465 0.95228 0.99014 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.45 71.24 0.74 -0.89 16 2 C 0.04 1.46 7.22 43.10 0.31 1.78 16 3 C -0.29 -7.78 10.65 21.99 0.23 -7.54 16 4 C 0.08 2.02 6.93 41.40 0.29 2.31 16 5 C -0.09 -1.35 9.95 71.23 0.71 -0.64 16 6 N -0.36 -12.48 2.98 -317.85 -0.95 -13.43 16 7 C 0.15 4.60 2.61 44.25 0.12 4.72 16 8 H 0.16 3.32 6.27 -2.38 -0.01 3.31 16 9 C -0.16 -4.05 8.92 71.98 0.64 -3.41 16 10 C 0.48 21.47 7.04 87.66 0.62 22.08 16 11 O -0.58 -33.32 15.39 -3.03 -0.05 -33.37 16 12 N -0.60 -25.82 2.85 -851.15 -2.43 -28.25 16 13 C 0.06 1.60 9.72 127.77 1.24 2.85 16 14 C 0.26 14.46 5.23 85.63 0.45 14.91 16 15 C -0.54 -32.15 9.39 25.60 0.24 -31.91 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.01 0.50 5.46 84.65 0.46 0.96 16 18 N -0.93 -57.35 13.29 21.44 0.28 -57.06 16 19 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 23 N -0.33 -13.31 11.64 -47.38 -0.55 -13.86 16 24 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.06 7.10 -2.39 -0.02 1.04 16 31 H 0.04 1.48 8.03 -2.39 -0.02 1.46 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 2.38 5.41 -2.39 -0.01 2.37 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 36 H 0.11 2.08 4.12 -2.38 -0.01 2.07 16 37 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 38 H -0.01 -0.54 7.36 -2.39 -0.02 -0.56 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -88.07 326.19 5.43 -82.65 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.04 Total: 10.08 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.05 Total: 5.20 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.64 Total: -112.61 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.37 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -88.07 5.43 -82.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330643683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.604 kcal (2) G-P(sol) polarization free energy of solvation -88.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds