Wall clock time and date at job start Mon Mar 30 2020 04:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30838 * 125.89705 * 2 1 4 4 N 1.40079 * 108.20783 * 180.26098 * 3 2 1 5 5 C 1.46504 * 126.03977 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.92817 * 359.97438 * 4 3 2 7 7 C 1.50693 * 126.13162 * 179.97438 * 6 4 3 8 8 C 1.35319 * 107.74234 * 0.02562 * 6 4 3 9 9 C 1.50699 * 126.03907 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47113 * 275.67520 * 9 8 6 11 11 H 1.09003 * 109.46922 * 54.42071 * 10 9 8 12 12 C 1.52992 * 109.47665 * 174.42406 * 10 9 8 13 13 N 1.46504 * 109.47407 * 294.42816 * 10 9 8 14 14 C 1.34767 * 120.00253 * 150.82314 * 13 10 9 15 15 O 1.21694 * 120.00047 * 359.97438 * 14 13 10 16 16 C 1.46380 * 120.00226 * 179.97438 * 14 13 10 17 17 H 1.08001 * 119.99445 * 7.09610 * 16 14 13 18 18 C 1.40042 * 120.00345 * 187.09531 * 16 14 13 19 19 N 1.30680 * 119.99980 * 7.17833 * 18 16 14 20 20 Si 1.86804 * 120.00180 * 187.16894 * 18 16 14 21 21 H 1.48498 * 109.46513 * 94.98949 * 20 18 16 22 22 H 1.48499 * 109.47218 * 214.98488 * 20 18 16 23 23 H 1.48496 * 109.47196 * 334.99219 * 20 18 16 24 24 H 1.08994 * 109.47528 * 266.59857 * 1 2 3 25 25 H 1.09003 * 109.47471 * 26.60605 * 1 2 3 26 26 H 1.09008 * 109.46651 * 146.60211 * 1 2 3 27 27 H 1.09000 * 109.46819 * 270.00553 * 5 4 3 28 28 H 1.09007 * 109.46865 * 29.99888 * 5 4 3 29 29 H 1.08992 * 109.47188 * 149.99836 * 5 4 3 30 30 H 1.09001 * 109.46928 * 270.04248 * 7 6 4 31 31 H 1.09004 * 109.46903 * 30.04236 * 7 6 4 32 32 H 1.08998 * 109.47083 * 150.04715 * 7 6 4 33 33 H 1.08996 * 109.47635 * 35.68005 * 9 8 6 34 34 H 1.09005 * 109.47401 * 155.68057 * 9 8 6 35 35 H 1.08994 * 109.47908 * 180.02562 * 12 10 9 36 36 H 1.09011 * 109.47012 * 300.00540 * 12 10 9 37 37 H 1.09003 * 109.47224 * 59.99850 * 12 10 9 38 38 H 0.97006 * 119.99819 * 330.81689 * 13 10 9 39 39 H 0.96995 * 119.99834 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6343 -0.0061 5 6 4.7898 1.5010 -0.0086 6 6 3.6143 -0.7152 -0.0091 7 6 4.8351 -1.5987 -0.0163 8 6 2.3272 -1.1329 -0.0057 9 6 1.8601 -2.5657 -0.0068 10 6 1.8330 -3.0922 -1.4431 11 1 2.8104 -2.9449 -1.9025 12 6 1.4936 -4.5839 -1.4333 13 7 0.8184 -2.3656 -2.2105 14 6 0.9718 -2.1953 -3.5386 15 8 1.9534 -2.6446 -4.1003 16 6 -0.0422 -1.4698 -4.3055 17 1 -0.8532 -0.9730 -3.7937 18 6 0.0392 -1.4198 -5.7026 19 7 0.9355 -2.1339 -6.3308 20 14 -1.1334 -0.3327 -6.6684 21 1 -0.4863 0.9764 -6.9376 22 1 -1.4724 -0.9913 -7.9555 23 1 -2.3734 -0.1191 -5.8798 24 1 -0.3634 -0.0610 1.0258 25 1 -0.3634 0.9188 -0.4602 26 1 -0.3633 -0.8580 -0.5657 27 1 5.0787 1.7183 -1.0369 28 1 4.5582 2.4324 0.5082 29 1 5.6112 0.9973 0.5009 30 1 5.1255 -1.8087 -1.0457 31 1 5.6532 -1.0921 0.4959 32 1 4.6096 -2.5341 0.4957 33 1 2.5430 -3.1710 0.5892 34 1 0.8584 -2.6217 0.4196 35 1 1.4747 -4.9591 -2.4564 36 1 2.2485 -5.1246 -0.8622 37 1 0.5161 -4.7312 -0.9738 38 1 0.0360 -2.0072 -1.7628 39 1 0.9921 -2.0990 -7.2985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330894548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:29 Heat of formation + Delta-G solvation = 20.388352 kcal Electronic energy + Delta-G solvation = -20786.956733 eV Core-core repulsion = 17730.741388 eV Total energy + Delta-G solvation = -3056.215345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06643 -37.55503 -34.96339 -33.74230 -32.43017 -31.87702 -29.85502 -29.32797 -27.89010 -25.98435 -25.74633 -24.19555 -21.17242 -19.50603 -19.31326 -18.85504 -17.15413 -16.10620 -15.50048 -15.28294 -14.69362 -14.12299 -13.97385 -13.67548 -13.26443 -13.05502 -12.99518 -12.77925 -12.51451 -12.45378 -12.21524 -11.85227 -11.74938 -11.65267 -11.54814 -11.38597 -11.06391 -10.87330 -10.81206 -10.37440 -10.16429 -10.09422 -10.02521 -8.76802 -8.70543 -7.85484 -7.47839 -7.31169 -6.13016 -4.52561 2.17699 2.78070 3.11298 3.18777 3.25925 3.29052 4.17902 4.64729 4.68932 4.84578 4.99151 5.12839 5.18388 5.28869 5.43394 5.49515 5.59280 5.63927 5.69282 5.78557 5.88879 5.93345 5.94994 6.07694 6.15242 6.25797 6.29975 6.38561 6.49845 6.52238 6.85275 6.97282 7.09248 7.35633 7.51967 8.07748 8.09863 8.28359 8.46401 9.12218 9.69043 10.70023 10.90867 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.006376 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.157282 B = 4390.235204 C = 4868.424167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.091 3.909 3 N -0.303 5.303 4 N -0.380 5.380 5 C 0.106 3.894 6 C 0.080 3.920 7 C -0.090 4.090 8 C -0.216 4.216 9 C -0.046 4.046 10 C 0.155 3.845 11 H 0.074 0.926 12 C -0.159 4.159 13 N -0.755 5.755 14 C 0.562 3.438 15 O -0.586 6.586 16 C -0.547 4.547 17 H 0.066 0.934 18 C 0.091 3.909 19 N -0.772 5.772 20 Si 0.903 3.097 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.375 0.625 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 2.174 14.489 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 N -0.126 5.126 4 N -0.162 5.162 5 C -0.036 4.036 6 C -0.046 4.046 7 C -0.148 4.148 8 C -0.227 4.227 9 C -0.085 4.085 10 C 0.048 3.952 11 H 0.093 0.907 12 C -0.218 4.218 13 N -0.410 5.410 14 C 0.365 3.635 15 O -0.469 6.469 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.128 4.128 19 N -0.401 5.401 20 Si 0.728 3.272 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.208 0.792 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.248 3.159 13.893 15.184 hybrid contribution -0.837 0.001 -0.425 0.938 sum 4.411 3.160 13.469 14.521 Atomic orbital electron populations 1.20223 0.87091 1.03764 1.02067 1.22082 0.96615 0.90277 0.98582 1.77232 0.86111 1.22656 1.26573 1.48124 1.05369 1.04031 1.58710 1.21716 0.84127 0.94632 1.03127 1.20731 0.96919 0.84450 1.02493 1.20428 0.92736 0.98089 1.03529 1.19572 0.90979 0.96187 1.15920 1.20239 1.00788 0.90375 0.97122 1.20494 0.94764 0.90123 0.89819 0.90745 1.22205 1.00153 0.97283 1.02110 1.46188 1.24168 1.61352 1.09313 1.18123 0.86760 0.79487 0.79117 1.90565 1.32772 1.54417 1.69134 1.20890 1.11256 1.35014 0.91236 0.91614 1.25655 0.94980 0.94222 0.97991 1.69996 1.29332 1.32198 1.08617 0.86443 0.81079 0.80523 0.79202 1.19933 1.20547 1.18873 0.91053 0.90905 0.90162 0.91056 0.89740 0.90008 0.89993 0.91771 0.89784 0.91305 0.91441 0.92108 0.93452 0.93426 0.79151 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.01 36.01 0.36 -0.71 16 2 C 0.09 1.60 7.22 -82.41 -0.59 1.00 16 3 N -0.30 -5.61 12.58 33.67 0.42 -5.19 16 4 N -0.38 -6.12 4.01 -63.88 -0.26 -6.37 16 5 C 0.11 1.17 11.27 59.85 0.67 1.85 16 6 C 0.08 1.27 6.93 -82.27 -0.57 0.70 16 7 C -0.09 -1.06 9.90 36.00 0.36 -0.70 16 8 C -0.22 -3.65 5.09 -105.05 -0.54 -4.18 16 9 C -0.05 -0.70 4.76 -27.88 -0.13 -0.83 16 10 C 0.15 2.97 2.62 -67.93 -0.18 2.79 16 11 H 0.07 1.66 7.44 -51.93 -0.39 1.27 16 12 C -0.16 -2.76 9.52 37.15 0.35 -2.40 16 13 N -0.75 -17.06 4.76 -55.22 -0.26 -17.32 16 14 C 0.56 16.21 7.71 -12.99 -0.10 16.11 16 15 O -0.59 -19.16 14.71 5.19 0.08 -19.09 16 16 C -0.55 -15.85 9.53 -35.63 -0.34 -16.18 16 17 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 18 C 0.09 2.60 5.48 -17.37 -0.10 2.51 16 19 N -0.77 -23.69 11.92 55.55 0.66 -23.02 16 20 Si 0.90 20.83 29.57 -169.99 -5.03 15.81 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.26 -5.87 7.11 56.52 0.40 -5.46 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.19 5.31 -51.92 -0.28 0.91 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.66 7.05 -51.93 -0.37 0.29 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.58 7.08 -51.93 -0.37 0.22 16 32 H 0.08 0.87 7.27 -51.93 -0.38 0.49 16 33 H 0.07 0.88 7.33 -51.93 -0.38 0.50 16 34 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.38 7.62 6.01 -40.82 -0.25 7.37 16 39 H 0.27 7.43 8.29 -40.82 -0.34 7.10 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -37.64 325.42 -6.01 -43.65 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.73 Total: 6.69 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.80 Total: -0.05 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.57 Total: -51.91 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.08 Total: -19.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.64 -6.01 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330894548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.035 kcal (2) G-P(sol) polarization free energy of solvation -37.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds