Wall clock time and date at job start Mon Mar 30 2020 04:31:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30841 * 125.90113 * 2 1
4 4 N 1.40091 * 108.20334 * 180.25855 * 3 2 1
5 5 C 1.46494 * 126.03316 * 179.69934 * 4 3 2
6 6 C 1.34945 * 107.92641 * 359.72330 * 4 3 2
7 7 C 1.50701 * 126.12574 * 179.97438 * 6 4 3
8 8 C 1.35320 * 107.74359 * 359.97438 * 6 4 3
9 9 C 1.50701 * 126.03550 * 179.97438 * 8 6 4
10 10 C 1.52997 * 109.47212 * 89.99805 * 9 8 6
11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8
12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9
13 13 C 1.34770 * 119.99912 * 179.97438 * 12 11 10
14 14 O 1.21691 * 120.00567 * 0.02562 * 13 12 11
15 15 C 1.46372 * 119.99969 * 180.02562 * 13 12 11
16 16 H 1.08001 * 120.00097 * 359.97438 * 15 13 12
17 17 C 1.40058 * 120.00171 * 180.02562 * 15 13 12
18 18 N 1.30667 * 119.99637 * 359.97438 * 17 15 13
19 19 Si 1.86794 * 119.99744 * 180.02562 * 17 15 13
20 20 H 1.48498 * 109.47545 * 359.97438 * 19 17 15
21 21 H 1.48496 * 109.47356 * 120.00063 * 19 17 15
22 22 H 1.48504 * 109.46892 * 239.99665 * 19 17 15
23 23 H 1.08997 * 109.46948 * 270.20982 * 1 2 3
24 24 H 1.08997 * 109.46782 * 30.20449 * 1 2 3
25 25 H 1.08993 * 109.47399 * 150.20471 * 1 2 3
26 26 H 1.09001 * 109.47611 * 270.02895 * 5 4 3
27 27 H 1.09001 * 109.47505 * 30.02607 * 5 4 3
28 28 H 1.09003 * 109.47354 * 150.03048 * 5 4 3
29 29 H 1.08997 * 109.46870 * 270.02890 * 7 6 4
30 30 H 1.08996 * 109.46729 * 30.02414 * 7 6 4
31 31 H 1.08999 * 109.46868 * 150.02980 * 7 6 4
32 32 H 1.09002 * 109.47060 * 209.99860 * 9 8 6
33 33 H 1.09001 * 109.47380 * 329.99947 * 9 8 6
34 34 H 1.09002 * 109.47153 * 299.99998 * 10 9 8
35 35 H 1.08998 * 109.47533 * 59.99628 * 10 9 8
36 36 H 1.09002 * 109.47103 * 300.00247 * 11 10 9
37 37 H 1.09001 * 109.47066 * 60.00169 * 11 10 9
38 38 H 0.96992 * 119.99570 * 0.02562 * 12 11 10
39 39 H 0.97008 * 119.99449 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2742 1.0598 0.0000
4 7 3.6088 0.6340 -0.0060
5 6 4.7899 1.5006 -0.0142
6 6 3.6142 -0.7155 -0.0034
7 6 4.8350 -1.5991 -0.0085
8 6 2.3271 -1.1330 0.0046
9 6 1.8598 -2.5657 0.0095
10 6 1.7100 -3.0484 1.4535
11 6 1.2350 -4.5027 1.4585
12 7 1.0921 -4.9651 2.8414
13 6 0.6818 -6.2242 3.0919
14 8 0.4305 -6.9772 2.1695
15 6 0.5385 -6.6860 4.4734
16 1 0.7620 -6.0179 5.2921
17 6 0.1126 -7.9946 4.7338
18 7 -0.1572 -8.8030 3.7433
19 14 -0.0709 -8.5836 6.4969
20 1 0.2932 -7.4844 7.4266
21 1 -1.4782 -8.9913 6.7387
22 1 0.8270 -9.7438 6.7272
23 1 -0.3633 0.0038 1.0276
24 1 -0.3633 0.8881 -0.5170
25 1 -0.3634 -0.8917 -0.5106
26 1 5.0772 1.7136 -1.0439
27 1 4.5592 2.4341 0.4990
28 1 5.6122 0.9990 0.4960
29 1 5.1239 -1.8136 -1.0373
30 1 5.6538 -1.0903 0.5002
31 1 4.6102 -2.5322 0.5080
32 1 0.8981 -2.6360 -0.4988
33 1 2.5903 -3.1879 -0.5076
34 1 2.6717 -2.9782 1.9618
35 1 0.9796 -2.4263 1.9707
36 1 0.2732 -4.5726 0.9504
37 1 1.9652 -5.1252 0.9414
38 1 1.2921 -4.3649 3.5765
39 1 -0.4525 -9.7093 3.9237
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000331047166.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:26
Heat of formation + Delta-G solvation = 12.904324 kcal
Electronic energy + Delta-G solvation = -19413.124833 eV
Core-core repulsion = 16356.584956 eV
Total energy + Delta-G solvation = -3056.539877 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.42860 -37.33529 -35.26198 -34.10056 -32.86597 -32.20563 -30.65530 -29.58382
-27.70019 -26.33542 -25.58834 -23.90471 -21.28116 -19.77459 -19.58311 -19.26543
-17.04778 -16.48080 -15.84585 -15.24844 -15.04954 -14.54438 -13.96617 -13.95042
-13.75203 -13.65086 -13.33112 -13.04063 -12.80475 -12.52941 -12.37400 -12.21707
-12.06847 -11.90866 -11.77211 -11.38273 -11.02921 -10.99008 -10.81287 -10.47403
-10.36625 -10.22605 -10.13907 -9.09983 -8.81392 -8.24275 -7.54019 -7.40346
-6.13582 -4.58558 1.78273 2.40539 2.70746 3.15843 3.23866 3.28532
4.14922 4.33790 4.52872 4.64766 4.84082 4.86226 4.92854 4.97562
5.12708 5.18725 5.28574 5.32516 5.38802 5.59419 5.65588 5.72935
5.78294 5.81945 5.89755 5.95499 6.02871 6.15172 6.29680 6.34229
6.68414 6.74116 6.76493 6.98085 7.48235 7.70562 8.00896 8.19506
8.39943 9.07671 9.62130 10.65916 10.85407
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.033666 B = 0.003236 C = 0.003176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.499697 B = 8651.095030 C = 8814.275351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.081 3.919
3 N -0.304 5.304
4 N -0.379 5.379
5 C 0.104 3.896
6 C 0.083 3.917
7 C -0.093 4.093
8 C -0.226 4.226
9 C -0.037 4.037
10 C -0.120 4.120
11 C 0.132 3.868
12 N -0.769 5.769
13 C 0.554 3.446
14 O -0.582 6.582
15 C -0.546 4.546
16 H 0.067 0.933
17 C 0.087 3.913
18 N -0.769 5.769
19 Si 0.907 3.093
20 H -0.264 1.264
21 H -0.276 1.276
22 H -0.277 1.277
23 H 0.077 0.923
24 H 0.069 0.931
25 H 0.080 0.920
26 H 0.071 0.929
27 H 0.086 0.914
28 H 0.084 0.916
29 H 0.079 0.921
30 H 0.067 0.933
31 H 0.090 0.910
32 H 0.071 0.929
33 H 0.068 0.932
34 H 0.059 0.941
35 H 0.062 0.938
36 H 0.047 0.953
37 H 0.046 0.954
38 H 0.379 0.621
39 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.839 18.066 -6.720 21.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.085 4.085
3 N -0.127 5.127
4 N -0.162 5.162
5 C -0.038 4.038
6 C -0.044 4.044
7 C -0.151 4.151
8 C -0.237 4.237
9 C -0.076 4.076
10 C -0.158 4.158
11 C 0.007 3.993
12 N -0.424 5.424
13 C 0.357 3.643
14 O -0.465 6.465
15 C -0.584 4.584
16 H 0.085 0.915
17 C -0.132 4.132
18 N -0.398 5.398
19 Si 0.732 3.268
20 H -0.188 1.188
21 H -0.202 1.202
22 H -0.202 1.202
23 H 0.096 0.904
24 H 0.088 0.912
25 H 0.099 0.901
26 H 0.089 0.911
27 H 0.105 0.895
28 H 0.103 0.897
29 H 0.097 0.903
30 H 0.086 0.914
31 H 0.109 0.891
32 H 0.090 0.910
33 H 0.086 0.914
34 H 0.078 0.922
35 H 0.081 0.919
36 H 0.065 0.935
37 H 0.064 0.936
38 H 0.210 0.790
39 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 8.772 18.699 -7.485 21.969
hybrid contribution 0.160 -0.684 1.240 1.425
sum 8.932 18.015 -6.245 21.055
Atomic orbital electron populations
1.20194 0.86708 1.03175 1.03168 1.22229 0.96847 0.90324 0.99067
1.77276 0.86181 1.22624 1.26571 1.48233 1.05435 1.04155 1.58378
1.21765 0.84111 0.94877 1.03026 1.20862 0.97054 0.84376 1.02074
1.20479 0.92728 0.98672 1.03253 1.19770 0.90998 0.96515 1.16421
1.19812 1.01319 0.89582 0.96861 1.21748 1.01395 0.96280 0.96358
1.20885 0.99642 0.92175 0.86573 1.46128 1.75546 1.15620 1.05150
1.18214 0.76579 0.78943 0.90517 1.90592 1.54668 1.54417 1.46865
1.20943 1.48308 0.97978 0.91128 0.91467 1.25713 0.93049 0.96397
0.98083 1.70040 1.32421 1.05560 1.31774 0.86334 0.78269 0.79094
0.83141 1.18819 1.20193 1.20216 0.90387 0.91224 0.90146 0.91060
0.89511 0.89699 0.90286 0.91372 0.89131 0.91015 0.91376 0.92188
0.91906 0.93509 0.93619 0.78987 0.92244
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.79 10.26 36.01 0.37 -0.42 16
2 C 0.08 1.08 7.22 -82.41 -0.59 0.49 16
3 N -0.30 -4.28 12.58 33.67 0.42 -3.86 16
4 N -0.38 -4.48 4.01 -63.89 -0.26 -4.74 16
5 C 0.10 0.74 11.27 59.84 0.67 1.41 16
6 C 0.08 0.97 6.93 -82.26 -0.57 0.40 16
7 C -0.09 -0.78 9.72 36.01 0.35 -0.43 16
8 C -0.23 -2.93 5.35 -105.05 -0.56 -3.49 16
9 C -0.04 -0.46 5.12 -27.88 -0.14 -0.61 16
10 C -0.12 -1.73 5.31 -26.74 -0.14 -1.88 16
11 C 0.13 2.55 5.67 -4.04 -0.02 2.53 16
12 N -0.77 -17.61 5.55 -61.72 -0.34 -17.95 16
13 C 0.55 16.13 7.75 -12.99 -0.10 16.03 16
14 O -0.58 -19.28 15.02 5.20 0.08 -19.20 16
15 C -0.55 -15.74 9.54 -35.63 -0.34 -16.08 16
16 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16
17 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16
18 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16
19 Si 0.91 20.38 29.56 -169.99 -5.02 15.35 16
20 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16
21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16
22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
25 H 0.08 0.78 7.25 -51.93 -0.38 0.41 16
26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
28 H 0.08 0.42 7.05 -51.93 -0.37 0.05 16
29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.07 0.45 7.08 -51.93 -0.37 0.08 16
31 H 0.09 0.80 7.77 -51.93 -0.40 0.40 16
32 H 0.07 0.88 7.25 -51.93 -0.38 0.50 16
33 H 0.07 0.82 7.77 -51.93 -0.40 0.41 16
34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16
38 H 0.38 7.66 8.45 -40.82 -0.35 7.31 16
39 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16
LS Contribution 331.56 15.07 5.00 5.00
Total: -1.00 -37.50 331.56 -6.64 -44.14
By element:
Atomic # 1 Polarization: 9.68 SS G_CDS: -5.99 Total: 3.69 kcal
Atomic # 6 Polarization: 1.51 SS G_CDS: -1.18 Total: 0.33 kcal
Atomic # 7 Polarization: -49.79 SS G_CDS: 0.48 Total: -49.31 kcal
Atomic # 8 Polarization: -19.28 SS G_CDS: 0.08 Total: -19.20 kcal
Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -37.50 -6.64 -44.14 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331047166.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.042 kcal
(2) G-P(sol) polarization free energy of solvation -37.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds