Wall clock time and date at job start Mon Mar 30 2020 04:31:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30841 * 125.90113 * 2 1
4 4 N 1.40091 * 108.20334 * 180.25855 * 3 2 1
5 5 C 1.46494 * 126.03316 * 179.69934 * 4 3 2
6 6 C 1.34945 * 107.92641 * 359.72330 * 4 3 2
7 7 C 1.50701 * 126.12574 * 179.97438 * 6 4 3
8 8 C 1.35320 * 107.74359 * 359.97438 * 6 4 3
9 9 C 1.50701 * 126.03550 * 179.97438 * 8 6 4
10 10 C 1.52997 * 109.47212 * 89.99805 * 9 8 6
11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8
12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9
13 13 C 1.34770 * 119.99912 * 179.97438 * 12 11 10
14 14 O 1.21691 * 120.00567 * 0.02562 * 13 12 11
15 15 C 1.46372 * 119.99969 * 180.02562 * 13 12 11
16 16 H 1.08001 * 120.00097 * 359.97438 * 15 13 12
17 17 C 1.40058 * 120.00171 * 180.02562 * 15 13 12
18 18 N 1.30667 * 119.99637 * 359.97438 * 17 15 13
19 19 Si 1.86794 * 119.99744 * 180.02562 * 17 15 13
20 20 H 1.48498 * 109.47545 * 359.97438 * 19 17 15
21 21 H 1.48496 * 109.47356 * 120.00063 * 19 17 15
22 22 H 1.48504 * 109.46892 * 239.99665 * 19 17 15
23 23 H 1.08997 * 109.46948 * 270.20982 * 1 2 3
24 24 H 1.08997 * 109.46782 * 30.20449 * 1 2 3
25 25 H 1.08993 * 109.47399 * 150.20471 * 1 2 3
26 26 H 1.09001 * 109.47611 * 270.02895 * 5 4 3
27 27 H 1.09001 * 109.47505 * 30.02607 * 5 4 3
28 28 H 1.09003 * 109.47354 * 150.03048 * 5 4 3
29 29 H 1.08997 * 109.46870 * 270.02890 * 7 6 4
30 30 H 1.08996 * 109.46729 * 30.02414 * 7 6 4
31 31 H 1.08999 * 109.46868 * 150.02980 * 7 6 4
32 32 H 1.09002 * 109.47060 * 209.99860 * 9 8 6
33 33 H 1.09001 * 109.47380 * 329.99947 * 9 8 6
34 34 H 1.09002 * 109.47153 * 299.99998 * 10 9 8
35 35 H 1.08998 * 109.47533 * 59.99628 * 10 9 8
36 36 H 1.09002 * 109.47103 * 300.00247 * 11 10 9
37 37 H 1.09001 * 109.47066 * 60.00169 * 11 10 9
38 38 H 0.96992 * 119.99570 * 0.02562 * 12 11 10
39 39 H 0.97008 * 119.99449 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2742 1.0598 0.0000
4 7 3.6088 0.6340 -0.0060
5 6 4.7899 1.5006 -0.0142
6 6 3.6142 -0.7155 -0.0034
7 6 4.8350 -1.5991 -0.0085
8 6 2.3271 -1.1330 0.0046
9 6 1.8598 -2.5657 0.0095
10 6 1.7100 -3.0484 1.4535
11 6 1.2350 -4.5027 1.4585
12 7 1.0921 -4.9651 2.8414
13 6 0.6818 -6.2242 3.0919
14 8 0.4305 -6.9772 2.1695
15 6 0.5385 -6.6860 4.4734
16 1 0.7620 -6.0179 5.2921
17 6 0.1126 -7.9946 4.7338
18 7 -0.1572 -8.8030 3.7433
19 14 -0.0709 -8.5836 6.4969
20 1 0.2932 -7.4844 7.4266
21 1 -1.4782 -8.9913 6.7387
22 1 0.8270 -9.7438 6.7272
23 1 -0.3633 0.0038 1.0276
24 1 -0.3633 0.8881 -0.5170
25 1 -0.3634 -0.8917 -0.5106
26 1 5.0772 1.7136 -1.0439
27 1 4.5592 2.4341 0.4990
28 1 5.6122 0.9990 0.4960
29 1 5.1239 -1.8136 -1.0373
30 1 5.6538 -1.0903 0.5002
31 1 4.6102 -2.5322 0.5080
32 1 0.8981 -2.6360 -0.4988
33 1 2.5903 -3.1879 -0.5076
34 1 2.6717 -2.9782 1.9618
35 1 0.9796 -2.4263 1.9707
36 1 0.2732 -4.5726 0.9504
37 1 1.9652 -5.1252 0.9414
38 1 1.2921 -4.3649 3.5765
39 1 -0.4525 -9.7093 3.9237
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331047166.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:26
Heat of formation + Delta-G solvation = -13.900675 kcal
Electronic energy + Delta-G solvation = -19414.287185 eV
Core-core repulsion = 16356.584956 eV
Total energy + Delta-G solvation = -3057.702229 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.31351 -39.39838 -36.65839 -35.12954 -34.61729 -33.97936 -31.85828 -30.38622
-29.11448 -27.88241 -26.63456 -25.09654 -22.63806 -21.69336 -20.49961 -20.28138
-19.10415 -17.40767 -17.32596 -16.64536 -16.38206 -16.14361 -15.84880 -14.98664
-14.81011 -14.44070 -14.38955 -14.19793 -13.94829 -13.81661 -13.46209 -13.25906
-13.18109 -12.94768 -12.88376 -12.72014 -12.70841 -12.61994 -12.53295 -12.10848
-11.95075 -11.66009 -11.27908 -10.92624 -9.97393 -9.85212 -9.42641 -9.15063
-8.26896 -6.83295 0.90401 1.41935 1.42163 1.60220 1.66424 1.75339
2.27109 2.49712 3.21737 3.59854 3.65132 3.76390 4.05846 4.14167
4.18323 4.31566 4.39016 4.47193 4.51781 4.60305 4.68366 4.73761
4.77675 4.79480 4.84420 5.02696 5.04086 5.07422 5.10256 5.28908
5.34317 5.39991 5.46393 5.79988 5.91264 6.19603 6.27738 6.33500
6.79464 6.88997 7.59462 8.52377 8.70231
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.033666 B = 0.003236 C = 0.003176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.499697 B = 8651.095030 C = 8814.275351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.067 3.933
3 N -0.338 5.338
4 N -0.382 5.382
5 C 0.093 3.907
6 C 0.086 3.914
7 C -0.092 4.092
8 C -0.252 4.252
9 C -0.027 4.027
10 C -0.099 4.099
11 C 0.134 3.866
12 N -0.757 5.757
13 C 0.536 3.464
14 O -0.634 6.634
15 C -0.575 4.575
16 H 0.087 0.913
17 C 0.027 3.973
18 N -0.823 5.823
19 Si 1.000 3.000
20 H -0.247 1.247
21 H -0.269 1.269
22 H -0.268 1.268
23 H 0.080 0.920
24 H 0.075 0.925
25 H 0.086 0.914
26 H 0.086 0.914
27 H 0.089 0.911
28 H 0.110 0.890
29 H 0.093 0.907
30 H 0.090 0.910
31 H 0.085 0.915
32 H 0.071 0.929
33 H 0.074 0.926
34 H 0.068 0.932
35 H 0.064 0.936
36 H 0.031 0.969
37 H 0.034 0.966
38 H 0.394 0.606
39 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.127 18.999 -5.302 22.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.098 4.098
3 N -0.161 5.161
4 N -0.164 5.164
5 C -0.047 4.047
6 C -0.042 4.042
7 C -0.150 4.150
8 C -0.263 4.263
9 C -0.066 4.066
10 C -0.137 4.137
11 C 0.010 3.990
12 N -0.411 5.411
13 C 0.339 3.661
14 O -0.522 6.522
15 C -0.611 4.611
16 H 0.105 0.895
17 C -0.188 4.188
18 N -0.452 5.452
19 Si 0.819 3.181
20 H -0.170 1.170
21 H -0.194 1.194
22 H -0.193 1.193
23 H 0.099 0.901
24 H 0.094 0.906
25 H 0.104 0.896
26 H 0.104 0.896
27 H 0.108 0.892
28 H 0.129 0.871
29 H 0.112 0.888
30 H 0.109 0.891
31 H 0.104 0.896
32 H 0.090 0.910
33 H 0.093 0.907
34 H 0.087 0.913
35 H 0.083 0.917
36 H 0.050 0.950
37 H 0.052 0.948
38 H 0.228 0.772
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 10.088 19.716 -6.065 22.962
hybrid contribution -0.171 -0.893 0.727 1.164
sum 9.917 18.823 -5.338 21.935
Atomic orbital electron populations
1.20251 0.85655 1.03802 1.03498 1.22607 0.97870 0.90445 0.98906
1.77207 0.87527 1.23442 1.27929 1.48615 1.05677 1.04770 1.57364
1.22135 0.83268 0.94817 1.04469 1.21362 0.97766 0.84803 1.00291
1.20591 0.92004 0.97962 1.04449 1.19833 0.91800 0.96180 1.18473
1.19678 1.01671 0.89920 0.95357 1.21568 1.01510 0.92561 0.98058
1.21003 0.98736 0.95011 0.84260 1.45843 1.73895 1.14141 1.07270
1.18631 0.76520 0.80329 0.90572 1.90544 1.57051 1.56404 1.48167
1.21486 1.48811 0.99214 0.91634 0.89498 1.27002 0.91729 0.96163
1.03904 1.70203 1.33342 1.06381 1.35302 0.84947 0.78564 0.78833
0.75760 1.17025 1.19364 1.19287 0.90129 0.90559 0.89565 0.89599
0.89217 0.87124 0.88833 0.89112 0.89603 0.90995 0.90710 0.91303
0.91686 0.95027 0.94791 0.77245 0.91584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.54 10.26 71.24 0.73 -0.81 16
2 C 0.07 1.75 7.22 43.10 0.31 2.06 16
3 N -0.34 -9.27 12.58 -47.38 -0.60 -9.86 16
4 N -0.38 -8.38 4.01 -356.04 -1.43 -9.81 16
5 C 0.09 1.11 11.27 127.77 1.44 2.55 16
6 C 0.09 1.85 6.93 41.41 0.29 2.14 16
7 C -0.09 -1.30 9.72 71.24 0.69 -0.61 16
8 C -0.25 -6.26 5.35 -20.14 -0.11 -6.37 16
9 C -0.03 -0.67 5.12 29.85 0.15 -0.52 16
10 C -0.10 -2.78 5.31 30.59 0.16 -2.61 16
11 C 0.13 5.23 5.67 86.38 0.49 5.72 16
12 N -0.76 -34.83 5.55 -467.41 -2.59 -37.43 16
13 C 0.54 31.82 7.75 86.36 0.67 32.49 16
14 O -0.63 -43.48 15.02 -4.32 -0.06 -43.54 16
15 C -0.57 -33.14 9.54 24.83 0.24 -32.90 16
16 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16
17 C 0.03 1.52 5.50 85.31 0.47 1.98 16
18 N -0.82 -51.06 11.83 21.84 0.26 -50.81 16
19 Si 1.00 41.31 29.56 68.60 2.03 43.33 16
20 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16
21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16
22 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16
23 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
25 H 0.09 1.65 7.25 -2.39 -0.02 1.64 16
26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
28 H 0.11 0.72 7.05 -2.39 -0.02 0.71 16
29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.09 0.87 7.08 -2.39 -0.02 0.85 16
31 H 0.09 1.33 7.77 -2.39 -0.02 1.31 16
32 H 0.07 1.74 7.25 -2.39 -0.02 1.72 16
33 H 0.07 1.72 7.77 -2.39 -0.02 1.70 16
34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16
37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16
38 H 0.39 15.63 8.45 -92.71 -0.78 14.85 16
39 H 0.27 15.32 8.29 -92.70 -0.77 14.55 16
Total: -1.00 -83.09 331.56 3.40 -79.68
By element:
Atomic # 1 Polarization: 25.06 SS G_CDS: 0.27 Total: 25.32 kcal
Atomic # 6 Polarization: -2.42 SS G_CDS: 5.53 Total: 3.11 kcal
Atomic # 7 Polarization: -103.55 SS G_CDS: -4.36 Total: -107.91 kcal
Atomic # 8 Polarization: -43.48 SS G_CDS: -0.06 Total: -43.54 kcal
Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal
Total: -83.09 3.40 -79.68 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331047166.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.783 kcal
(2) G-P(sol) polarization free energy of solvation -83.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.302 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.684 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds