Wall clock time and date at job start Mon Mar 30 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 H 1.08997 * 109.47175 * 305.00605 * 3 2 1 5 5 C 1.52998 * 109.46888 * 65.00326 * 3 2 1 6 6 N 1.46503 * 109.47499 * 185.00276 * 3 2 1 7 7 N 1.39932 * 125.75210 * 300.00534 * 6 3 2 8 8 C 1.30444 * 108.91142 * 179.73364 * 7 6 3 9 9 C 1.41314 * 108.02680 * 0.40654 * 8 7 6 10 10 C 1.47362 * 126.41911 * 179.85509 * 9 8 7 11 11 O 1.21622 * 120.00014 * 213.69260 * 10 9 8 12 12 N 1.34773 * 119.99833 * 33.68547 * 10 9 8 13 13 C 1.46496 * 120.00293 * 3.27174 * 12 10 9 14 14 C 1.36985 * 120.00121 * 183.26525 * 12 10 9 15 15 H 1.08007 * 119.99631 * 326.57679 * 14 12 10 16 16 C 1.38973 * 120.00266 * 146.29291 * 14 12 10 17 17 N 1.31415 * 120.00049 * 163.63651 * 16 14 12 18 18 Si 1.86802 * 119.99823 * 343.64542 * 16 14 12 19 19 H 1.48498 * 109.47128 * 89.25882 * 18 16 14 20 20 H 1.48501 * 109.46816 * 209.26099 * 18 16 14 21 21 H 1.48501 * 109.47253 * 329.25635 * 18 16 14 22 22 C 1.34284 * 125.74876 * 119.99792 * 6 3 2 23 23 C 1.50698 * 126.30074 * 0.02921 * 22 6 3 24 24 H 1.09007 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46935 * 299.98860 * 1 2 3 26 26 H 1.08997 * 109.47718 * 59.99572 * 1 2 3 27 27 H 1.09009 * 109.46715 * 240.00786 * 2 1 3 28 28 H 1.08998 * 109.47598 * 120.00968 * 2 1 3 29 29 H 1.09002 * 109.47701 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.47795 * 300.00310 * 5 3 2 31 31 H 1.09007 * 109.46963 * 60.00294 * 5 3 2 32 32 H 1.08001 * 125.98071 * 180.24009 * 8 7 6 33 33 H 1.09005 * 109.47126 * 275.13781 * 13 12 10 34 34 H 1.09003 * 109.47194 * 35.13168 * 13 12 10 35 35 H 1.08997 * 109.47674 * 155.13527 * 13 12 10 36 36 H 0.96996 * 119.99894 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.47134 * 269.99565 * 23 22 6 38 38 H 1.09005 * 109.47415 * 29.99679 * 23 22 6 39 39 H 1.09003 * 109.47558 * 149.99535 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 7 3.5001 1.4443 -0.1204 7 7 4.3951 0.8491 0.7755 8 6 5.6124 1.0441 0.3493 9 6 5.5421 1.7907 -0.8484 10 6 6.6816 2.2381 -1.6687 11 8 6.6244 3.2978 -2.2627 12 7 7.7873 1.4730 -1.7605 13 6 7.8291 0.1642 -1.1036 14 6 8.8721 1.9190 -2.4681 15 1 8.7294 2.5333 -3.3449 16 6 10.1564 1.5860 -2.0545 17 7 11.1695 1.7262 -2.8796 18 14 10.4424 0.9389 -0.3256 19 1 10.3086 -0.5401 -0.3222 20 1 11.8073 1.3136 0.1236 21 1 9.4386 1.5288 0.5962 22 6 4.2049 2.0173 -1.1093 23 6 3.6409 2.7698 -2.2869 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.9982 3.1543 1.3073 30 1 0.5490 2.1251 1.3971 31 1 2.0700 1.5873 2.1492 32 1 6.5158 0.6982 0.8295 33 1 8.1265 0.2895 -0.0624 34 1 6.8417 -0.2955 -1.1464 35 1 8.5500 -0.4752 -1.6129 36 1 12.0659 1.4941 -2.5907 37 1 3.4612 2.0768 -3.1087 38 1 2.7022 3.2437 -1.9994 39 1 4.3510 3.5334 -2.6042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331077089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:21 Heat of formation + Delta-G solvation = 44.591326 kcal Electronic energy + Delta-G solvation = -20622.518701 eV Core-core repulsion = 17567.352876 eV Total energy + Delta-G solvation = -3055.165825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17008 -38.25758 -36.40346 -34.76220 -32.40324 -31.92782 -31.03692 -28.99623 -27.18497 -26.46440 -25.12618 -24.47847 -22.11171 -21.30319 -19.31880 -18.41856 -17.08897 -16.72566 -15.71332 -15.51750 -15.17707 -14.99973 -14.44784 -13.90966 -13.70684 -13.49051 -13.10988 -12.99298 -12.68993 -12.53787 -12.40809 -12.24296 -12.10838 -12.03334 -11.96006 -11.74593 -11.40910 -11.16547 -11.05066 -10.61270 -10.40981 -10.35032 -9.83785 -9.06276 -9.05333 -8.53093 -8.05992 -7.67551 -6.30891 -3.88133 1.97495 2.54274 2.75062 3.12798 3.28445 3.29257 4.13715 4.22566 4.29557 4.56768 4.61990 4.73298 4.85006 4.94796 5.06237 5.14254 5.19904 5.27387 5.30712 5.42513 5.58955 5.68602 5.71190 5.72085 5.78863 5.87480 5.97424 6.00059 6.02810 6.13637 6.18225 6.39466 6.41241 6.83514 7.20869 7.63611 7.92732 8.34836 8.61796 9.03488 9.40611 9.88741 10.81755 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.005147 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.032076 B = 5438.573494 C = 5842.769353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.158 3.842 4 H 0.100 0.900 5 C -0.162 4.162 6 N -0.363 5.363 7 N -0.304 5.304 8 C 0.071 3.929 9 C -0.262 4.262 10 C 0.540 3.460 11 O -0.570 6.570 12 N -0.464 5.464 13 C 0.058 3.942 14 C -0.310 4.310 15 H 0.109 0.891 16 C 0.056 3.944 17 N -0.872 5.872 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.266 1.266 22 C 0.128 3.872 23 C -0.098 4.098 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.185 0.815 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.273 0.727 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.432 -4.394 6.992 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.056 3.944 4 H 0.118 0.882 5 C -0.219 4.219 6 N -0.145 5.145 7 N -0.124 5.124 8 C -0.115 4.115 9 C -0.277 4.277 10 C 0.329 3.671 11 O -0.453 6.453 12 N -0.184 5.184 13 C -0.086 4.086 14 C -0.437 4.437 15 H 0.127 0.873 16 C -0.149 4.149 17 N -0.510 5.510 18 Si 0.712 3.288 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.191 1.191 22 C -0.002 4.002 23 C -0.156 4.156 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.202 0.798 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.086 -4.414 7.575 21.916 hybrid contribution 0.989 -0.163 0.447 1.098 sum -19.096 -4.577 8.022 21.212 Atomic orbital electron populations 1.21802 0.94582 1.02340 1.02129 1.21845 0.96218 0.95090 1.03747 1.21344 0.74817 0.98047 1.00179 0.88204 1.22166 1.01802 1.01068 0.96892 1.48495 1.05968 1.42079 1.17939 1.76990 0.99225 1.21065 1.15151 1.24194 0.95703 0.96784 0.94853 1.20424 0.93319 1.12404 1.01546 1.17119 0.82670 0.84034 0.83281 1.90589 1.81968 1.23562 1.49139 1.43476 1.14011 1.13629 1.47327 1.22168 1.02113 0.87377 0.96896 1.19143 0.82445 1.33354 1.08794 0.87314 1.25348 0.95184 0.96735 0.97649 1.69704 1.00115 1.46481 1.34669 0.86963 0.77458 0.78916 0.85505 1.20105 1.21711 1.19141 1.21407 0.91162 0.95850 0.91773 1.20610 1.01461 1.00422 0.93085 0.92092 0.92111 0.92457 0.91373 0.90435 0.92060 0.90678 0.91037 0.79797 0.94192 0.91889 0.90569 0.91658 0.90334 0.91712 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.13 -1.22 5.65 -26.73 -0.15 -1.37 16 3 C 0.16 1.66 3.09 -67.93 -0.21 1.45 16 4 H 0.10 0.88 6.63 -51.93 -0.34 0.53 16 5 C -0.16 -1.51 9.20 37.16 0.34 -1.17 16 6 N -0.36 -5.41 3.25 -50.14 -0.16 -5.57 16 7 N -0.30 -5.09 12.33 30.87 0.38 -4.71 16 8 C 0.07 1.28 9.88 -16.97 -0.17 1.12 16 9 C -0.26 -5.28 5.32 -105.06 -0.56 -5.84 16 10 C 0.54 13.30 7.44 -12.55 -0.09 13.21 16 11 O -0.57 -15.70 15.22 5.26 0.08 -15.62 16 12 N -0.46 -11.70 2.68 -123.44 -0.33 -12.03 16 13 C 0.06 1.21 6.73 59.84 0.40 1.61 16 14 C -0.31 -8.99 9.48 -14.98 -0.14 -9.13 16 15 H 0.11 3.52 7.79 -52.48 -0.41 3.11 16 16 C 0.06 1.56 5.27 -17.46 -0.09 1.47 16 17 N -0.87 -25.68 13.96 55.50 0.77 -24.91 16 18 Si 0.88 20.90 24.14 -169.99 -4.10 16.80 16 19 H -0.28 -6.00 6.90 56.52 0.39 -5.61 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.20 6.61 56.52 0.37 -5.82 16 22 C 0.13 2.18 7.00 -81.57 -0.57 1.61 16 23 C -0.10 -1.38 9.73 36.00 0.35 -1.03 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.19 3.06 6.15 -52.49 -0.32 2.74 16 33 H 0.04 0.78 4.17 -51.93 -0.22 0.57 16 34 H 0.06 1.14 6.34 -51.93 -0.33 0.81 16 35 H 0.08 1.59 6.61 -51.93 -0.34 1.25 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.69 7.07 -51.93 -0.37 0.33 16 39 H 0.11 1.84 6.55 -51.93 -0.34 1.50 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -33.56 310.42 -4.71 -38.26 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.49 Total: 1.80 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.53 Total: 1.30 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.66 Total: -47.22 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.08 Total: -15.62 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.10 Total: 16.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.56 -4.71 -38.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331077089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.853 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds