Wall clock time and date at job start Mon Mar 30 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 H 1.08997 * 109.47175 * 305.00605 * 3 2 1 5 5 C 1.52998 * 109.46888 * 65.00326 * 3 2 1 6 6 N 1.46503 * 109.47499 * 185.00276 * 3 2 1 7 7 N 1.39932 * 125.75210 * 300.00534 * 6 3 2 8 8 C 1.30444 * 108.91142 * 179.73364 * 7 6 3 9 9 C 1.41314 * 108.02680 * 0.40654 * 8 7 6 10 10 C 1.47362 * 126.41911 * 179.85509 * 9 8 7 11 11 O 1.21622 * 120.00014 * 213.69260 * 10 9 8 12 12 N 1.34773 * 119.99833 * 33.68547 * 10 9 8 13 13 C 1.46496 * 120.00293 * 3.27174 * 12 10 9 14 14 C 1.36985 * 120.00121 * 183.26525 * 12 10 9 15 15 H 1.08007 * 119.99631 * 326.57679 * 14 12 10 16 16 C 1.38973 * 120.00266 * 146.29291 * 14 12 10 17 17 N 1.31415 * 120.00049 * 163.63651 * 16 14 12 18 18 Si 1.86802 * 119.99823 * 343.64542 * 16 14 12 19 19 H 1.48498 * 109.47128 * 89.25882 * 18 16 14 20 20 H 1.48501 * 109.46816 * 209.26099 * 18 16 14 21 21 H 1.48501 * 109.47253 * 329.25635 * 18 16 14 22 22 C 1.34284 * 125.74876 * 119.99792 * 6 3 2 23 23 C 1.50698 * 126.30074 * 0.02921 * 22 6 3 24 24 H 1.09007 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46935 * 299.98860 * 1 2 3 26 26 H 1.08997 * 109.47718 * 59.99572 * 1 2 3 27 27 H 1.09009 * 109.46715 * 240.00786 * 2 1 3 28 28 H 1.08998 * 109.47598 * 120.00968 * 2 1 3 29 29 H 1.09002 * 109.47701 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.47795 * 300.00310 * 5 3 2 31 31 H 1.09007 * 109.46963 * 60.00294 * 5 3 2 32 32 H 1.08001 * 125.98071 * 180.24009 * 8 7 6 33 33 H 1.09005 * 109.47126 * 275.13781 * 13 12 10 34 34 H 1.09003 * 109.47194 * 35.13168 * 13 12 10 35 35 H 1.08997 * 109.47674 * 155.13527 * 13 12 10 36 36 H 0.96996 * 119.99894 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.47134 * 269.99565 * 23 22 6 38 38 H 1.09005 * 109.47415 * 29.99679 * 23 22 6 39 39 H 1.09003 * 109.47558 * 149.99535 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 7 3.5001 1.4443 -0.1204 7 7 4.3951 0.8491 0.7755 8 6 5.6124 1.0441 0.3493 9 6 5.5421 1.7907 -0.8484 10 6 6.6816 2.2381 -1.6687 11 8 6.6244 3.2978 -2.2627 12 7 7.7873 1.4730 -1.7605 13 6 7.8291 0.1642 -1.1036 14 6 8.8721 1.9190 -2.4681 15 1 8.7294 2.5333 -3.3449 16 6 10.1564 1.5860 -2.0545 17 7 11.1695 1.7262 -2.8796 18 14 10.4424 0.9389 -0.3256 19 1 10.3086 -0.5401 -0.3222 20 1 11.8073 1.3136 0.1236 21 1 9.4386 1.5288 0.5962 22 6 4.2049 2.0173 -1.1093 23 6 3.6409 2.7698 -2.2869 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.9982 3.1543 1.3073 30 1 0.5490 2.1251 1.3971 31 1 2.0700 1.5873 2.1492 32 1 6.5158 0.6982 0.8295 33 1 8.1265 0.2895 -0.0624 34 1 6.8417 -0.2955 -1.1464 35 1 8.5500 -0.4752 -1.6129 36 1 12.0659 1.4941 -2.5907 37 1 3.4612 2.0768 -3.1087 38 1 2.7022 3.2437 -1.9994 39 1 4.3510 3.5334 -2.6042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331077089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:21 Heat of formation + Delta-G solvation = 21.135485 kcal Electronic energy + Delta-G solvation = -20623.535823 eV Core-core repulsion = 17567.352876 eV Total energy + Delta-G solvation = -3056.182947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50323 -40.09076 -37.31709 -36.73635 -34.16044 -33.49104 -32.16301 -29.96611 -28.57692 -28.20355 -26.68740 -25.61505 -23.24811 -22.76322 -20.43773 -20.02349 -19.11419 -18.12960 -17.51152 -16.87988 -16.42067 -16.10541 -15.98350 -15.45055 -15.17567 -14.64278 -14.54913 -14.35350 -14.10255 -13.88893 -13.76024 -13.57163 -13.33155 -13.17290 -13.03511 -12.72547 -12.56728 -12.45369 -12.35510 -12.04265 -11.80037 -11.76303 -11.58555 -11.09626 -10.47102 -10.26656 -9.74987 -9.46591 -8.47238 -6.11233 0.62180 1.21866 1.27717 1.40321 1.40867 1.46227 2.21503 2.36927 2.78021 3.08165 3.40926 3.63690 3.82155 3.86102 4.01709 4.09057 4.21594 4.37488 4.39149 4.43949 4.52574 4.55390 4.61317 4.62810 4.75768 4.77185 4.89641 4.96996 5.06879 5.12249 5.13658 5.26650 5.41965 5.45834 5.59550 6.02114 6.05497 6.55378 6.63519 6.94346 7.31951 7.90815 8.70197 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.005147 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.032076 B = 5438.573494 C = 5842.769353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.144 3.856 4 H 0.125 0.875 5 C -0.157 4.157 6 N -0.349 5.349 7 N -0.304 5.304 8 C 0.072 3.928 9 C -0.303 4.303 10 C 0.539 3.461 11 O -0.615 6.615 12 N -0.477 5.477 13 C 0.058 3.942 14 C -0.331 4.331 15 H 0.049 0.951 16 C 0.009 3.991 17 N -0.918 5.918 18 Si 0.953 3.047 19 H -0.236 1.236 20 H -0.290 1.290 21 H -0.258 1.258 22 C 0.140 3.860 23 C -0.096 4.096 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.197 0.803 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.280 0.720 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.218 -5.992 9.383 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.044 3.956 4 H 0.143 0.857 5 C -0.214 4.214 6 N -0.130 5.130 7 N -0.124 5.124 8 C -0.115 4.115 9 C -0.318 4.318 10 C 0.329 3.671 11 O -0.501 6.501 12 N -0.198 5.198 13 C -0.085 4.085 14 C -0.459 4.459 15 H 0.067 0.933 16 C -0.192 4.192 17 N -0.556 5.556 18 Si 0.776 3.224 19 H -0.159 1.159 20 H -0.217 1.217 21 H -0.183 1.183 22 C 0.007 3.993 23 C -0.154 4.154 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.213 0.787 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.914 -6.055 9.984 25.718 hybrid contribution 1.690 0.398 -0.381 1.777 sum -21.225 -5.657 9.603 23.973 Atomic orbital electron populations 1.21785 0.92100 1.03132 1.03302 1.21795 0.98227 0.93716 1.02577 1.21925 0.72088 0.99571 1.01999 0.85695 1.22158 1.03854 0.99989 0.95427 1.48903 1.07433 1.40211 1.16412 1.76969 0.98935 1.21058 1.15448 1.24295 0.96639 0.96467 0.94071 1.20087 0.93026 1.15864 1.02789 1.17785 0.83391 0.83361 0.82537 1.90548 1.82956 1.25532 1.51019 1.43545 1.13165 1.15450 1.47624 1.22324 1.03850 0.85116 0.97189 1.18756 0.84706 1.34130 1.08334 0.93257 1.26166 0.94088 0.96785 1.02186 1.69827 1.00872 1.47896 1.37033 0.85882 0.77217 0.80566 0.78785 1.15927 1.21715 1.18304 1.21704 0.90551 0.94642 0.92386 1.20669 1.02259 0.99873 0.92645 0.91606 0.90947 0.91242 0.92451 0.91751 0.92887 0.87361 0.92424 0.78669 0.92257 0.89213 0.90812 0.91048 0.88680 0.87583 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.62 16 2 C -0.12 -1.92 5.65 30.59 0.17 -1.74 16 3 C 0.14 2.51 3.09 44.99 0.14 2.65 16 4 H 0.13 1.60 6.63 -2.39 -0.02 1.58 16 5 C -0.16 -2.37 9.20 71.98 0.66 -1.71 16 6 N -0.35 -9.49 3.25 -312.56 -1.02 -10.51 16 7 N -0.30 -9.46 12.33 -56.26 -0.69 -10.16 16 8 C 0.07 2.45 9.88 85.66 0.85 3.30 16 9 C -0.30 -12.04 5.32 -20.15 -0.11 -12.15 16 10 C 0.54 27.31 7.44 86.65 0.65 27.96 16 11 O -0.61 -35.82 15.22 -4.10 -0.06 -35.88 16 12 N -0.48 -24.60 2.68 -662.70 -1.78 -26.38 16 13 C 0.06 2.30 6.73 127.77 0.86 3.16 16 14 C -0.33 -20.22 9.48 84.06 0.80 -19.42 16 15 H 0.05 3.50 7.79 -2.91 -0.02 3.47 16 16 C 0.01 0.52 5.27 84.93 0.45 0.96 16 17 N -0.92 -55.96 13.96 21.67 0.30 -55.66 16 18 Si 0.95 42.53 24.14 68.60 1.66 44.19 16 19 H -0.24 -9.06 6.90 99.48 0.69 -8.38 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.26 -11.15 6.61 99.48 0.66 -10.49 16 22 C 0.14 4.54 7.00 42.15 0.30 4.83 16 23 C -0.10 -2.57 9.73 71.24 0.69 -1.88 16 24 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.07 0.50 6.57 -2.39 -0.02 0.49 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 0.93 6.57 -2.39 -0.02 0.92 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.20 6.02 6.15 -2.91 -0.02 6.00 16 33 H 0.06 2.14 4.17 -2.38 -0.01 2.13 16 34 H 0.09 3.08 6.34 -2.39 -0.02 3.06 16 35 H 0.07 2.96 6.61 -2.39 -0.02 2.94 16 36 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.11 1.90 7.07 -2.38 -0.02 1.89 16 39 H 0.08 2.62 6.55 -2.39 -0.02 2.60 16 Total: -1.00 -78.43 310.42 5.54 -72.89 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.98 Total: 16.16 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.15 Total: 5.34 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -3.19 Total: -102.70 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.06 Total: -35.88 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.66 Total: 44.19 kcal Total: -78.43 5.54 -72.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331077089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.029 kcal (2) G-P(sol) polarization free energy of solvation -78.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds