Wall clock time and date at job start Mon Mar 30 2020 05:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34943 * 126.04144 * 2 1 4 4 C 1.35318 * 107.74881 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.04166 * 180.02562 * 4 3 2 6 6 H 1.09010 * 109.46984 * 19.97744 * 5 4 3 7 7 N 1.46501 * 109.47082 * 139.97229 * 5 4 3 8 8 C 1.34783 * 119.99977 * 205.00297 * 7 5 4 9 9 O 1.21689 * 119.99946 * 359.97438 * 8 7 5 10 10 C 1.46374 * 119.99731 * 180.02562 * 8 7 5 11 11 H 1.08001 * 120.00165 * 353.94920 * 10 8 7 12 12 C 1.40052 * 119.99975 * 173.95071 * 10 8 7 13 13 N 1.30673 * 119.99687 * 6.15171 * 12 10 8 14 14 Si 1.86794 * 120.00084 * 186.15719 * 12 10 8 15 15 H 1.48499 * 109.47612 * 94.98341 * 14 12 10 16 16 H 1.48502 * 109.46866 * 214.98165 * 14 12 10 17 17 H 1.48497 * 109.47341 * 334.97904 * 14 12 10 18 18 C 1.52998 * 109.47383 * 259.97515 * 5 4 3 19 19 C 1.52998 * 109.47151 * 60.00133 * 18 5 4 20 20 C 1.53001 * 109.46932 * 179.97438 * 18 5 4 21 21 C 1.53002 * 109.46976 * 299.99684 * 18 5 4 22 22 C 1.39868 * 107.91928 * 0.02562 * 4 3 2 23 23 N 1.30835 * 108.20113 * 359.97438 * 22 4 3 24 24 H 1.09004 * 109.47578 * 270.02736 * 1 2 3 25 25 H 1.09004 * 109.46983 * 30.02637 * 1 2 3 26 26 H 1.08997 * 109.47622 * 150.02476 * 1 2 3 27 27 H 1.08005 * 126.12471 * 359.97438 * 3 2 1 28 28 H 0.96997 * 120.00181 * 25.00632 * 7 5 4 29 29 H 0.96998 * 120.00091 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.47345 * 60.00072 * 19 18 5 31 31 H 1.09003 * 109.46903 * 180.02562 * 19 18 5 32 32 H 1.08999 * 109.46869 * 299.99641 * 19 18 5 33 33 H 1.09000 * 109.47299 * 60.00224 * 20 18 5 34 34 H 1.09003 * 109.46986 * 179.97438 * 20 18 5 35 35 H 1.08998 * 109.47359 * 299.99802 * 20 18 5 36 36 H 1.08996 * 109.46776 * 60.00417 * 21 18 5 37 37 H 1.09002 * 109.46653 * 180.02562 * 21 18 5 38 38 H 1.08994 * 109.47045 * 299.99820 * 21 18 5 39 39 H 1.08001 * 125.89757 * 180.26831 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 0.0006 5 6 4.7680 1.5451 0.0013 6 1 4.4998 2.5416 0.3525 7 7 5.7810 0.9704 0.8901 8 6 6.7147 1.7647 1.4503 9 8 6.7166 2.9591 1.2175 10 6 7.7271 1.1903 2.3379 11 1 7.6687 0.1499 2.6218 12 6 8.7715 1.9899 2.8189 13 7 8.7771 3.2736 2.5748 14 14 10.1564 1.2213 3.8091 15 1 11.2911 0.9001 2.9067 16 1 10.6085 2.1769 4.8521 17 1 9.6705 -0.0239 4.4559 18 6 5.3295 1.6387 -1.4188 19 6 4.2716 2.2389 -2.3469 20 6 6.5722 2.5313 -1.4180 21 6 5.7060 0.2400 -1.9116 22 6 3.5346 -0.7322 0.0003 23 7 2.2891 -1.1328 0.0002 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9281 2.1193 -0.0004 28 1 5.7797 0.0182 1.0753 29 1 9.5006 3.8274 2.9076 30 1 4.0035 3.2354 -1.9959 31 1 4.6716 2.3052 -3.3588 32 1 3.3861 1.6034 -2.3476 33 1 7.3260 2.1041 -0.7567 34 1 6.9725 2.5976 -2.4297 35 1 6.3036 3.5277 -1.0671 36 1 4.8204 -0.3955 -1.9122 37 1 6.1064 0.3068 -2.9232 38 1 6.4596 -0.1876 -1.2504 39 1 4.4053 -1.3712 0.0048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331083333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:30 Heat of formation + Delta-G solvation = 32.444535 kcal Electronic energy + Delta-G solvation = -20987.926073 eV Core-core repulsion = 17932.233524 eV Total energy + Delta-G solvation = -3055.692549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15139 -38.25860 -35.75004 -33.14807 -32.52859 -31.78889 -30.12371 -27.36117 -26.73332 -26.59164 -25.77906 -24.17386 -20.97292 -20.25603 -19.63996 -18.00480 -17.31132 -16.29229 -15.45427 -15.26507 -14.62752 -14.44570 -14.21930 -14.04923 -13.58068 -12.98927 -12.83161 -12.52463 -12.45756 -12.23508 -12.04551 -11.88635 -11.52534 -11.17462 -11.06812 -10.98341 -10.84940 -10.44682 -10.39822 -10.34411 -10.15226 -9.88930 -9.82000 -9.19748 -8.77851 -8.12450 -7.46968 -7.30588 -6.12393 -4.55527 2.05990 2.65966 3.04883 3.17570 3.25357 3.28465 4.16504 4.56045 4.66634 4.94211 5.05972 5.09931 5.23161 5.29338 5.47541 5.48378 5.65213 5.80439 5.87849 5.94509 6.08114 6.10715 6.24905 6.30372 6.40070 6.46832 6.63983 6.70991 6.75748 6.89436 6.91565 7.11276 7.16230 7.47483 7.50703 7.86841 8.03695 8.24085 8.43502 9.10256 9.65206 10.67304 10.88279 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.005663 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.459738 B = 4943.436678 C = 5452.147114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.383 5.383 3 C 0.053 3.947 4 C -0.215 4.215 5 C 0.241 3.759 6 H 0.077 0.923 7 N -0.755 5.755 8 C 0.560 3.440 9 O -0.574 6.574 10 C -0.547 4.547 11 H 0.065 0.935 12 C 0.091 3.909 13 N -0.768 5.768 14 Si 0.902 3.098 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.070 4.070 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.137 4.137 22 C 0.060 3.940 23 N -0.305 5.305 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.377 0.623 29 H 0.266 0.734 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 -5.053 -6.911 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.166 5.166 3 C -0.092 4.092 4 C -0.227 4.227 5 C 0.133 3.867 6 H 0.095 0.905 7 N -0.409 5.409 8 C 0.363 3.637 9 O -0.457 6.457 10 C -0.584 4.584 11 H 0.083 0.917 12 C -0.129 4.129 13 N -0.396 5.396 14 Si 0.727 3.273 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.072 4.072 19 C -0.192 4.192 20 C -0.183 4.183 21 C -0.194 4.194 22 C -0.126 4.126 23 N -0.127 5.127 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.209 0.791 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.047 -4.971 -7.036 15.634 hybrid contribution 1.166 -0.134 0.585 1.311 sum -11.881 -5.105 -6.452 14.451 Atomic orbital electron populations 1.21751 0.74830 1.04004 1.03012 1.48356 1.06228 1.03937 1.58127 1.22238 0.90822 0.93121 1.03047 1.20377 0.94680 0.94128 1.13521 1.18731 0.83829 0.95033 0.89079 0.90505 1.46145 1.32607 1.10497 1.51624 1.18067 0.79998 0.85735 0.79863 1.90600 1.74581 1.15373 1.65117 1.20897 1.09824 0.97281 1.30439 0.91676 1.25641 0.98150 0.94267 0.94826 1.70021 1.29001 1.04682 1.35935 0.86450 0.81487 0.79660 0.79690 1.19906 1.20609 1.18998 1.20876 0.95849 0.95445 0.95045 1.21822 0.98509 1.00209 0.98683 1.21850 0.97239 1.00046 0.99157 1.21875 1.00902 0.96671 0.99977 1.23700 0.94816 0.94829 0.99275 1.77290 1.01758 1.08244 1.25362 0.91128 0.89813 0.89691 0.81272 0.79130 0.92317 0.93117 0.93538 0.93322 0.90892 0.95458 0.92254 0.93134 0.93990 0.92192 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 11.47 59.84 0.69 1.55 16 2 N -0.38 -5.03 4.01 -68.16 -0.27 -5.30 16 3 C 0.05 0.73 10.68 -17.22 -0.18 0.55 16 4 C -0.22 -3.41 3.69 -105.06 -0.39 -3.80 16 5 C 0.24 4.50 1.98 -69.08 -0.14 4.36 16 6 H 0.08 1.64 7.57 -51.92 -0.39 1.24 16 7 N -0.76 -16.23 4.18 -56.34 -0.24 -16.46 16 8 C 0.56 15.11 6.10 -12.98 -0.08 15.03 16 9 O -0.57 -17.29 12.16 5.20 0.06 -17.22 16 10 C -0.55 -15.14 9.53 -35.63 -0.34 -15.48 16 11 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 12 C 0.09 2.49 5.49 -17.36 -0.10 2.40 16 13 N -0.77 -22.56 11.85 55.55 0.66 -21.90 16 14 Si 0.90 20.12 29.56 -169.99 -5.03 15.10 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 18 C -0.07 -1.22 0.62 -154.51 -0.10 -1.31 16 19 C -0.13 -1.98 8.17 37.16 0.30 -1.67 16 20 C -0.13 -2.58 7.00 37.16 0.26 -2.32 16 21 C -0.14 -2.16 7.75 37.16 0.29 -1.88 16 22 C 0.06 0.92 9.10 -17.37 -0.16 0.76 16 23 N -0.30 -4.70 12.58 30.62 0.39 -4.32 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.17 1.89 8.06 -52.48 -0.42 1.46 16 28 H 0.38 7.41 7.61 -40.82 -0.31 7.10 16 29 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.67 6.71 -51.93 -0.35 0.33 16 33 H 0.07 1.77 5.77 -51.93 -0.30 1.47 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 1.33 7.53 -51.93 -0.39 0.94 16 36 H 0.05 0.74 5.73 -51.93 -0.30 0.44 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 39 H 0.18 2.49 7.50 -52.49 -0.39 2.09 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -33.59 314.48 -5.38 -38.98 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.76 Total: 8.20 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 0.06 Total: -1.81 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.53 Total: -47.99 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.06 Total: -17.22 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.59 -5.38 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331083333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.420 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds