Wall clock time and date at job start Mon Mar 30 2020 05:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34943 * 126.04144 * 2 1 4 4 C 1.35318 * 107.74881 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.04166 * 180.02562 * 4 3 2 6 6 H 1.09010 * 109.46984 * 19.97744 * 5 4 3 7 7 N 1.46501 * 109.47082 * 139.97229 * 5 4 3 8 8 C 1.34783 * 119.99977 * 205.00297 * 7 5 4 9 9 O 1.21689 * 119.99946 * 359.97438 * 8 7 5 10 10 C 1.46374 * 119.99731 * 180.02562 * 8 7 5 11 11 H 1.08001 * 120.00165 * 353.94920 * 10 8 7 12 12 C 1.40052 * 119.99975 * 173.95071 * 10 8 7 13 13 N 1.30673 * 119.99687 * 6.15171 * 12 10 8 14 14 Si 1.86794 * 120.00084 * 186.15719 * 12 10 8 15 15 H 1.48499 * 109.47612 * 94.98341 * 14 12 10 16 16 H 1.48502 * 109.46866 * 214.98165 * 14 12 10 17 17 H 1.48497 * 109.47341 * 334.97904 * 14 12 10 18 18 C 1.52998 * 109.47383 * 259.97515 * 5 4 3 19 19 C 1.52998 * 109.47151 * 60.00133 * 18 5 4 20 20 C 1.53001 * 109.46932 * 179.97438 * 18 5 4 21 21 C 1.53002 * 109.46976 * 299.99684 * 18 5 4 22 22 C 1.39868 * 107.91928 * 0.02562 * 4 3 2 23 23 N 1.30835 * 108.20113 * 359.97438 * 22 4 3 24 24 H 1.09004 * 109.47578 * 270.02736 * 1 2 3 25 25 H 1.09004 * 109.46983 * 30.02637 * 1 2 3 26 26 H 1.08997 * 109.47622 * 150.02476 * 1 2 3 27 27 H 1.08005 * 126.12471 * 359.97438 * 3 2 1 28 28 H 0.96997 * 120.00181 * 25.00632 * 7 5 4 29 29 H 0.96998 * 120.00091 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.47345 * 60.00072 * 19 18 5 31 31 H 1.09003 * 109.46903 * 180.02562 * 19 18 5 32 32 H 1.08999 * 109.46869 * 299.99641 * 19 18 5 33 33 H 1.09000 * 109.47299 * 60.00224 * 20 18 5 34 34 H 1.09003 * 109.46986 * 179.97438 * 20 18 5 35 35 H 1.08998 * 109.47359 * 299.99802 * 20 18 5 36 36 H 1.08996 * 109.46776 * 60.00417 * 21 18 5 37 37 H 1.09002 * 109.46653 * 180.02562 * 21 18 5 38 38 H 1.08994 * 109.47045 * 299.99820 * 21 18 5 39 39 H 1.08001 * 125.89757 * 180.26831 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 0.0006 5 6 4.7680 1.5451 0.0013 6 1 4.4998 2.5416 0.3525 7 7 5.7810 0.9704 0.8901 8 6 6.7147 1.7647 1.4503 9 8 6.7166 2.9591 1.2175 10 6 7.7271 1.1903 2.3379 11 1 7.6687 0.1499 2.6218 12 6 8.7715 1.9899 2.8189 13 7 8.7771 3.2736 2.5748 14 14 10.1564 1.2213 3.8091 15 1 11.2911 0.9001 2.9067 16 1 10.6085 2.1769 4.8521 17 1 9.6705 -0.0239 4.4559 18 6 5.3295 1.6387 -1.4188 19 6 4.2716 2.2389 -2.3469 20 6 6.5722 2.5313 -1.4180 21 6 5.7060 0.2400 -1.9116 22 6 3.5346 -0.7322 0.0003 23 7 2.2891 -1.1328 0.0002 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9281 2.1193 -0.0004 28 1 5.7797 0.0182 1.0753 29 1 9.5006 3.8274 2.9076 30 1 4.0035 3.2354 -1.9959 31 1 4.6716 2.3052 -3.3588 32 1 3.3861 1.6034 -2.3476 33 1 7.3260 2.1041 -0.7567 34 1 6.9725 2.5976 -2.4297 35 1 6.3036 3.5277 -1.0671 36 1 4.8204 -0.3955 -1.9122 37 1 6.1064 0.3068 -2.9232 38 1 6.4596 -0.1876 -1.2504 39 1 4.4053 -1.3712 0.0048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331083333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:30 Heat of formation + Delta-G solvation = 9.012447 kcal Electronic energy + Delta-G solvation = -20988.942165 eV Core-core repulsion = 17932.233524 eV Total energy + Delta-G solvation = -3056.708641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30584 -39.92954 -37.54909 -34.59660 -34.23883 -33.47557 -31.41506 -28.82172 -28.24055 -27.92857 -27.27990 -25.63594 -22.25034 -21.50868 -21.32853 -19.44542 -19.13482 -17.62804 -17.28586 -16.57142 -16.03785 -15.90989 -15.82708 -15.31814 -14.93942 -14.40321 -14.15615 -13.96907 -13.85861 -13.41658 -13.33604 -13.17327 -12.97762 -12.83704 -12.75721 -12.57548 -12.44291 -12.35880 -12.01743 -11.85032 -11.66274 -11.42454 -11.22166 -10.84046 -10.26930 -9.66953 -9.30195 -9.10775 -8.19573 -6.72719 0.97028 1.42053 1.42620 1.57176 1.73934 1.84237 2.29404 2.60089 3.30551 3.66987 3.78154 4.02922 4.12595 4.14985 4.25495 4.37530 4.48764 4.53573 4.66869 4.73572 4.83002 4.87384 4.89313 4.98430 5.05957 5.13086 5.20605 5.28224 5.33816 5.40162 5.45347 5.62437 5.70589 5.75770 6.02623 6.17028 6.35813 6.50110 6.77278 6.97938 7.72208 8.62845 8.82476 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.005663 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.459738 B = 4943.436678 C = 5452.147114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.376 5.376 3 C 0.066 3.934 4 C -0.239 4.239 5 C 0.248 3.752 6 H 0.044 0.956 7 N -0.743 5.743 8 C 0.551 3.449 9 O -0.614 6.614 10 C -0.578 4.578 11 H 0.078 0.922 12 C 0.036 3.964 13 N -0.818 5.818 14 Si 0.986 3.014 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.253 1.253 18 C -0.068 4.068 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.128 4.128 22 C 0.055 3.945 23 N -0.324 5.324 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.196 0.804 28 H 0.387 0.613 29 H 0.271 0.729 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 -6.546 -7.423 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.159 5.159 3 C -0.082 4.082 4 C -0.251 4.251 5 C 0.141 3.859 6 H 0.062 0.938 7 N -0.396 5.396 8 C 0.354 3.646 9 O -0.500 6.500 10 C -0.615 4.615 11 H 0.096 0.904 12 C -0.179 4.179 13 N -0.448 5.448 14 Si 0.807 3.193 15 H -0.190 1.190 16 H -0.200 1.200 17 H -0.176 1.176 18 C -0.070 4.070 19 C -0.182 4.182 20 C -0.172 4.172 21 C -0.186 4.186 22 C -0.131 4.131 23 N -0.146 5.146 24 H 0.100 0.900 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.213 0.787 28 H 0.220 0.780 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.487 -6.522 -7.567 17.597 hybrid contribution 1.451 0.350 0.719 1.657 sum -13.035 -6.171 -6.848 15.966 Atomic orbital electron populations 1.22188 0.71889 1.06038 1.04443 1.48738 1.07813 1.03029 1.56278 1.22581 0.90236 0.94402 1.00943 1.20061 0.94272 0.94058 1.16702 1.18653 0.84393 0.93891 0.88967 0.93771 1.45837 1.32050 1.10492 1.51199 1.18253 0.80806 0.85578 0.79992 1.90563 1.75803 1.17148 1.66476 1.21409 1.10774 0.98103 1.31205 0.90420 1.26755 1.00906 0.94557 0.95684 1.70177 1.30382 1.06647 1.37614 0.85173 0.77384 0.78902 0.77854 1.19024 1.19963 1.17628 1.20839 0.95089 0.95958 0.95085 1.21719 0.97981 1.00118 0.98419 1.21690 0.97837 0.98810 0.98874 1.21784 1.01128 0.95517 1.00129 1.23775 0.95280 0.94582 0.99431 1.77254 1.01877 1.09499 1.26018 0.89957 0.86774 0.88782 0.78723 0.78007 0.91933 0.93302 0.92175 0.91822 0.95210 0.93493 0.95160 0.91551 0.92688 0.93849 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.47 127.77 1.47 2.67 16 2 N -0.38 -8.78 4.01 -369.57 -1.48 -10.26 16 3 C 0.07 1.65 10.68 83.54 0.89 2.54 16 4 C -0.24 -7.30 3.69 -20.15 -0.07 -7.37 16 5 C 0.25 9.39 1.98 44.24 0.09 9.48 16 6 H 0.04 1.96 7.57 -2.38 -0.02 1.94 16 7 N -0.74 -32.91 4.18 -450.38 -1.88 -34.79 16 8 C 0.55 31.02 6.10 86.36 0.53 31.54 16 9 O -0.61 -39.05 12.16 -4.31 -0.05 -39.11 16 10 C -0.58 -32.80 9.53 24.83 0.24 -32.56 16 11 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 12 C 0.04 2.02 5.49 85.31 0.47 2.48 16 13 N -0.82 -49.87 11.85 21.84 0.26 -49.61 16 14 Si 0.99 41.72 29.56 68.60 2.03 43.75 16 15 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 18 C -0.07 -2.34 0.62 -52.18 -0.03 -2.38 16 19 C -0.12 -3.45 8.17 71.98 0.59 -2.86 16 20 C -0.11 -4.89 7.00 71.98 0.50 -4.38 16 21 C -0.13 -3.91 7.75 71.98 0.56 -3.36 16 22 C 0.05 1.60 9.10 85.24 0.78 2.37 16 23 N -0.32 -9.32 12.58 -57.02 -0.72 -10.04 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.20 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.39 15.48 7.61 -92.71 -0.71 14.77 16 29 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.58 6.71 -2.39 -0.02 1.57 16 33 H 0.03 1.50 5.77 -2.39 -0.01 1.49 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.03 1.42 7.53 -2.39 -0.02 1.40 16 36 H 0.07 1.82 5.73 -2.39 -0.01 1.81 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 1.45 7.60 -2.39 -0.02 1.43 16 39 H 0.19 4.95 7.50 -2.91 -0.02 4.93 16 Total: -1.00 -76.15 314.48 4.49 -71.66 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.34 Total: 30.21 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 6.00 Total: -1.82 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -3.82 Total: -104.70 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.05 Total: -39.11 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -76.15 4.49 -71.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331083333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.668 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds