Wall clock time and date at job start Mon Mar 30 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.37413 * 2 1 4 4 C 1.52995 * 109.37679 * 119.64304 * 2 1 3 5 5 N 1.47184 * 108.72189 * 170.48054 * 4 2 1 6 6 C 1.46897 * 111.00581 * 167.62475 * 5 4 2 7 7 C 1.53005 * 109.46816 * 286.81123 * 6 5 4 8 8 H 1.09005 * 109.46651 * 54.85822 * 7 6 5 9 9 C 1.47199 * 109.47372 * 294.85603 * 7 6 5 10 10 N 5.13350 * 144.82653 * 55.01014 * 2 1 3 11 11 C 1.52995 * 109.46993 * 174.85371 * 7 6 5 12 12 C 1.50697 * 109.47358 * 185.00312 * 11 7 6 13 13 H 1.08001 * 120.00037 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00582 * 180.02562 * 12 11 7 15 15 N 1.31510 * 120.00595 * 179.97438 * 14 12 11 16 16 Si 1.86809 * 119.99560 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47014 * 89.99774 * 16 14 12 18 18 H 1.48502 * 109.46755 * 209.99641 * 16 14 12 19 19 H 1.48497 * 109.47169 * 329.99958 * 16 14 12 20 20 C 1.46910 * 110.17539 * 290.99443 * 5 4 2 21 21 C 1.50254 * 109.97981 * 50.29215 * 20 5 4 22 22 O 1.21277 * 118.62334 * 162.80039 * 21 20 5 23 23 N 1.33717 * 122.74975 * 342.82335 * 21 20 5 24 24 C 1.46500 * 118.53752 * 181.64113 * 23 21 20 25 25 H 1.08993 * 109.46727 * 179.77174 * 1 2 3 26 26 H 1.08996 * 109.47198 * 299.77682 * 1 2 3 27 27 H 1.09000 * 109.46413 * 59.77114 * 1 2 3 28 28 H 1.09003 * 109.60863 * 50.70305 * 4 2 1 29 29 H 1.09000 * 109.59110 * 290.24574 * 4 2 1 30 30 H 1.08996 * 109.47177 * 166.81422 * 6 5 4 31 31 H 1.08992 * 109.47004 * 46.81158 * 6 5 4 32 32 H 1.09000 * 109.47506 * 305.00499 * 11 7 6 33 33 H 1.09000 * 109.47158 * 65.00114 * 11 7 6 34 34 H 0.96997 * 120.00240 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.38517 * 170.45011 * 20 5 4 36 36 H 1.09001 * 109.38180 * 290.13839 * 20 5 4 37 37 H 1.09004 * 109.47088 * 0.02562 * 24 23 21 38 38 H 1.09000 * 109.47266 * 119.99926 * 24 23 21 39 39 H 1.08999 * 109.47350 * 240.00509 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8917 1.0283 0.0000 4 6 2.0377 -0.7138 1.2544 5 7 3.4913 -0.9090 1.1313 6 6 4.0781 -1.3187 2.4142 7 6 4.1102 -0.1210 3.3658 8 1 3.1077 0.2969 3.4578 9 6 5.0224 0.9044 2.8335 10 7 5.7262 1.6957 2.4227 11 6 4.6014 -0.5759 4.7415 12 6 4.5167 0.5749 5.7109 13 1 4.1498 1.5348 5.3788 14 6 4.9087 0.4026 7.0215 15 7 4.8354 1.4070 7.8673 16 14 5.5455 -1.2571 7.5954 17 1 7.0175 -1.3144 7.4078 18 1 5.2221 -1.4411 9.0330 19 1 4.9031 -2.3352 6.8015 20 6 3.7831 -1.8935 0.0806 21 6 3.0467 -1.5340 -1.1787 22 8 3.4035 -2.0353 -2.2237 23 7 2.0145 -0.6840 -1.1955 24 6 1.3400 -0.4272 -2.4704 25 1 -0.3632 -1.0276 -0.0041 26 1 -0.3633 0.5103 0.8919 27 1 -0.3632 0.5174 -0.8880 28 1 1.5455 -1.6819 1.3488 29 1 1.8237 -0.1053 2.1330 30 1 5.0933 -1.6800 2.2504 31 1 3.4754 -2.1144 2.8518 32 1 3.9783 -1.3967 5.0967 33 1 5.6356 -0.9115 4.6654 34 1 5.1108 1.2857 8.7894 35 1 4.8549 -1.9042 -0.1175 36 1 3.4685 -2.8824 0.4140 37 1 1.8181 -1.0094 -3.2581 38 1 0.2918 -0.7153 -2.3914 39 1 1.4081 0.6339 -2.7102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337442259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:02 Heat of formation + Delta-G solvation = -2.079882 kcal Electronic energy + Delta-G solvation = -20270.921000 eV Core-core repulsion = 17213.731359 eV Total energy + Delta-G solvation = -3057.189641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76288 -38.06120 -36.65278 -35.45759 -33.67073 -32.00575 -31.65299 -28.98111 -27.55230 -26.82284 -24.48766 -22.73158 -21.93206 -21.52266 -18.76201 -17.53586 -17.06932 -16.72533 -16.59069 -15.76823 -15.18372 -15.01789 -14.64706 -14.07641 -13.57486 -13.55031 -13.40401 -13.21969 -13.02329 -12.56217 -12.39780 -12.25887 -12.22332 -11.99007 -11.83786 -11.50232 -11.43993 -11.33041 -11.23296 -10.82038 -10.31954 -10.21100 -9.97782 -9.70749 -9.37777 -8.89645 -8.66328 -8.59257 -6.14858 -4.16057 2.46651 2.80568 3.23610 3.30447 3.32038 3.51525 3.67084 3.75074 4.29664 4.34157 4.44712 4.68432 4.77244 4.86732 5.03228 5.09057 5.19729 5.20562 5.28691 5.29367 5.32110 5.45344 5.50663 5.56275 5.59916 5.73066 5.75198 5.89529 6.04970 6.16502 6.22574 6.68157 6.77425 6.87520 7.04549 7.23931 7.58324 7.99055 8.35667 8.49780 8.88448 9.44776 10.98144 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029712 B = 0.004445 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.144101 B = 6297.311774 C = 6460.144962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.084 0.916 4 C 0.034 3.966 5 N -0.536 5.536 6 C 0.057 3.943 7 C 0.024 3.976 8 H 0.106 0.894 9 C 0.250 3.750 10 N -0.468 5.468 11 C -0.006 4.006 12 C -0.529 4.529 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.263 1.263 20 C 0.040 3.960 21 C 0.525 3.475 22 O -0.557 6.557 23 N -0.601 5.601 24 C 0.071 3.929 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.022 0.978 34 H 0.265 0.735 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.617 -7.775 -14.404 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.102 0.898 4 C -0.094 4.094 5 N -0.261 5.261 6 C -0.072 4.072 7 C 0.002 3.998 8 H 0.124 0.876 9 C -0.067 4.067 10 N -0.145 5.145 11 C -0.045 4.045 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.090 4.090 21 C 0.313 3.687 22 O -0.435 6.435 23 N -0.334 5.334 24 C -0.071 4.071 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.110 -6.333 -15.512 19.072 hybrid contribution -0.282 -1.686 1.006 1.983 sum -9.392 -8.019 -14.506 19.051 Atomic orbital electron populations 1.22157 0.93941 1.02808 1.03282 1.21128 0.94260 0.97118 0.83537 0.89760 1.22689 0.87809 1.00637 0.98293 1.62514 1.11553 1.45192 1.06821 1.22352 1.00786 0.96559 0.87467 1.18953 0.96617 0.89058 0.95193 0.87638 1.28674 0.93379 0.93528 0.91104 1.81018 1.10934 1.10839 1.11676 1.19653 0.96883 0.98268 0.89659 1.21000 1.44699 0.97310 0.93656 0.90749 1.24982 0.94824 0.96550 0.96660 1.69897 1.47573 1.31127 1.04794 0.86829 0.79775 0.84841 0.78142 1.20217 1.21259 1.18765 1.22268 1.02244 0.95227 0.89259 1.20136 0.79654 0.78105 0.90791 1.90699 1.66239 1.53582 1.32973 1.47421 1.32171 1.44260 1.09557 1.21728 0.97246 1.01692 0.86478 0.92022 0.90446 0.91637 0.93219 0.87571 0.89650 0.92010 0.94469 0.96013 0.92517 0.86832 0.90837 0.89369 0.92073 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.48 37.16 0.32 -0.77 16 2 C 0.14 1.32 3.55 -68.20 -0.24 1.08 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.03 0.33 4.72 -3.67 -0.02 0.31 16 5 N -0.54 -6.30 4.38 -236.10 -1.03 -7.33 16 6 C 0.06 0.70 4.32 -3.82 -0.02 0.68 16 7 C 0.02 0.39 2.24 -93.41 -0.21 0.18 16 8 H 0.11 1.58 6.50 -51.93 -0.34 1.24 16 9 C 0.25 4.93 13.67 -20.76 -0.28 4.65 16 10 N -0.47 -10.34 18.54 42.15 0.78 -9.56 16 11 C -0.01 -0.11 3.49 -27.89 -0.10 -0.21 16 12 C -0.53 -13.68 9.15 -34.44 -0.32 -14.00 16 13 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -26.42 13.96 55.43 0.77 -25.64 16 16 Si 0.88 20.02 27.47 -169.99 -4.67 15.35 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 20 C 0.04 0.46 5.51 -5.19 -0.03 0.43 16 21 C 0.52 6.90 7.57 -11.67 -0.09 6.82 16 22 O -0.56 -9.05 16.07 5.56 0.09 -8.96 16 23 N -0.60 -6.60 3.11 -174.80 -0.54 -7.14 16 24 C 0.07 0.65 9.60 59.85 0.57 1.22 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.39 6.94 -51.93 -0.36 0.03 16 28 H 0.05 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.11 0.98 6.38 -51.93 -0.33 0.64 16 30 H 0.09 1.04 7.99 -51.93 -0.42 0.62 16 31 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.04 0.70 7.20 -51.93 -0.37 0.32 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.09 0.95 6.67 -51.93 -0.35 0.60 16 38 H 0.06 0.43 6.95 -51.93 -0.36 0.07 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -33.10 319.32 -6.17 -39.27 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.87 Total: -3.06 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.51 Total: 2.25 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.02 Total: -49.67 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.10 -6.17 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337442259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.189 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds