Wall clock time and date at job start Mon Mar 30 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.37413 * 2 1 4 4 C 1.52995 * 109.37679 * 119.64304 * 2 1 3 5 5 N 1.47184 * 108.72189 * 170.48054 * 4 2 1 6 6 C 1.46897 * 111.00581 * 167.62475 * 5 4 2 7 7 C 1.53005 * 109.46816 * 286.81123 * 6 5 4 8 8 H 1.09005 * 109.46651 * 54.85822 * 7 6 5 9 9 C 1.47199 * 109.47372 * 294.85603 * 7 6 5 10 10 N 5.13350 * 144.82653 * 55.01014 * 2 1 3 11 11 C 1.52995 * 109.46993 * 174.85371 * 7 6 5 12 12 C 1.50697 * 109.47358 * 185.00312 * 11 7 6 13 13 H 1.08001 * 120.00037 * 359.97438 * 12 11 7 14 14 C 1.37875 * 120.00582 * 180.02562 * 12 11 7 15 15 N 1.31510 * 120.00595 * 179.97438 * 14 12 11 16 16 Si 1.86809 * 119.99560 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47014 * 89.99774 * 16 14 12 18 18 H 1.48502 * 109.46755 * 209.99641 * 16 14 12 19 19 H 1.48497 * 109.47169 * 329.99958 * 16 14 12 20 20 C 1.46910 * 110.17539 * 290.99443 * 5 4 2 21 21 C 1.50254 * 109.97981 * 50.29215 * 20 5 4 22 22 O 1.21277 * 118.62334 * 162.80039 * 21 20 5 23 23 N 1.33717 * 122.74975 * 342.82335 * 21 20 5 24 24 C 1.46500 * 118.53752 * 181.64113 * 23 21 20 25 25 H 1.08993 * 109.46727 * 179.77174 * 1 2 3 26 26 H 1.08996 * 109.47198 * 299.77682 * 1 2 3 27 27 H 1.09000 * 109.46413 * 59.77114 * 1 2 3 28 28 H 1.09003 * 109.60863 * 50.70305 * 4 2 1 29 29 H 1.09000 * 109.59110 * 290.24574 * 4 2 1 30 30 H 1.08996 * 109.47177 * 166.81422 * 6 5 4 31 31 H 1.08992 * 109.47004 * 46.81158 * 6 5 4 32 32 H 1.09000 * 109.47506 * 305.00499 * 11 7 6 33 33 H 1.09000 * 109.47158 * 65.00114 * 11 7 6 34 34 H 0.96997 * 120.00240 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.38517 * 170.45011 * 20 5 4 36 36 H 1.09001 * 109.38180 * 290.13839 * 20 5 4 37 37 H 1.09004 * 109.47088 * 0.02562 * 24 23 21 38 38 H 1.09000 * 109.47266 * 119.99926 * 24 23 21 39 39 H 1.08999 * 109.47350 * 240.00509 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8917 1.0283 0.0000 4 6 2.0377 -0.7138 1.2544 5 7 3.4913 -0.9090 1.1313 6 6 4.0781 -1.3187 2.4142 7 6 4.1102 -0.1210 3.3658 8 1 3.1077 0.2969 3.4578 9 6 5.0224 0.9044 2.8335 10 7 5.7262 1.6957 2.4227 11 6 4.6014 -0.5759 4.7415 12 6 4.5167 0.5749 5.7109 13 1 4.1498 1.5348 5.3788 14 6 4.9087 0.4026 7.0215 15 7 4.8354 1.4070 7.8673 16 14 5.5455 -1.2571 7.5954 17 1 7.0175 -1.3144 7.4078 18 1 5.2221 -1.4411 9.0330 19 1 4.9031 -2.3352 6.8015 20 6 3.7831 -1.8935 0.0806 21 6 3.0467 -1.5340 -1.1787 22 8 3.4035 -2.0353 -2.2237 23 7 2.0145 -0.6840 -1.1955 24 6 1.3400 -0.4272 -2.4704 25 1 -0.3632 -1.0276 -0.0041 26 1 -0.3633 0.5103 0.8919 27 1 -0.3632 0.5174 -0.8880 28 1 1.5455 -1.6819 1.3488 29 1 1.8237 -0.1053 2.1330 30 1 5.0933 -1.6800 2.2504 31 1 3.4754 -2.1144 2.8518 32 1 3.9783 -1.3967 5.0967 33 1 5.6356 -0.9115 4.6654 34 1 5.1108 1.2857 8.7894 35 1 4.8549 -1.9042 -0.1175 36 1 3.4685 -2.8824 0.4140 37 1 1.8181 -1.0094 -3.2581 38 1 0.2918 -0.7153 -2.3914 39 1 1.4081 0.6339 -2.7102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337442259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:01 Heat of formation + Delta-G solvation = -25.805723 kcal Electronic energy + Delta-G solvation = -20271.949829 eV Core-core repulsion = 17213.731359 eV Total energy + Delta-G solvation = -3058.218470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65459 -39.16574 -37.78829 -36.63675 -35.37593 -33.70081 -32.43426 -30.21312 -28.24568 -28.10163 -25.59767 -23.51456 -23.25106 -22.90743 -19.59416 -18.87428 -18.59515 -17.78142 -17.72173 -16.69992 -16.45123 -16.01980 -15.78011 -15.42421 -14.86332 -14.67938 -14.38305 -14.27743 -14.07762 -13.97423 -13.77617 -13.31305 -13.11114 -13.04541 -12.97168 -12.76564 -12.67131 -12.44007 -12.25737 -12.00477 -11.75225 -11.67412 -11.64178 -11.26230 -10.85439 -10.69918 -9.74499 -9.42263 -8.20747 -6.26063 1.47122 1.47825 1.50398 1.58330 2.00175 2.09251 2.17032 2.44457 2.69249 3.16407 3.34908 3.47816 3.73327 3.92590 4.15793 4.26075 4.31151 4.37779 4.39004 4.57654 4.58813 4.62318 4.68337 4.75012 4.86522 4.90086 4.91808 4.95105 5.09299 5.29892 5.31669 5.42850 5.48032 5.66589 5.83878 5.94361 6.30282 6.37026 6.82165 6.95617 7.05965 7.38582 8.96079 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029712 B = 0.004445 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.144101 B = 6297.311774 C = 6460.144962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.071 0.929 4 C 0.031 3.969 5 N -0.553 5.553 6 C 0.067 3.933 7 C 0.029 3.971 8 H 0.121 0.879 9 C 0.263 3.737 10 N -0.520 5.520 11 C -0.004 4.004 12 C -0.528 4.528 13 H 0.030 0.970 14 C 0.004 3.996 15 N -0.956 5.956 16 Si 0.945 3.055 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.218 1.218 20 C 0.047 3.953 21 C 0.515 3.485 22 O -0.598 6.598 23 N -0.600 5.600 24 C 0.069 3.931 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 -10.446 -14.673 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.096 4.096 5 N -0.279 5.279 6 C -0.061 4.061 7 C 0.007 3.993 8 H 0.138 0.862 9 C -0.053 4.053 10 N -0.198 5.198 11 C -0.043 4.043 12 C -0.566 4.566 13 H 0.048 0.952 14 C -0.193 4.193 15 N -0.596 5.596 16 Si 0.768 3.232 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.140 1.140 20 C -0.083 4.083 21 C 0.305 3.695 22 O -0.480 6.480 23 N -0.331 5.331 24 C -0.074 4.074 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.556 -9.000 -15.804 21.028 hybrid contribution 0.099 -0.705 1.049 1.268 sum -10.456 -9.706 -14.755 20.524 Atomic orbital electron populations 1.22113 0.91619 1.03447 1.04251 1.21259 0.96018 0.96145 0.82865 0.91049 1.22801 0.86631 1.01736 0.98447 1.62391 1.13071 1.45791 1.06630 1.22229 1.02006 0.94925 0.86986 1.19091 0.96075 0.89787 0.94329 0.86182 1.29495 0.92795 0.93139 0.89920 1.81020 1.12669 1.12572 1.13513 1.19614 0.97913 0.96739 0.90077 1.21404 1.42834 0.97580 0.94777 0.95183 1.26011 0.95446 1.00836 0.97010 1.70085 1.50142 1.34146 1.05261 0.85751 0.78901 0.80804 0.77742 1.20622 1.21888 1.14046 1.22191 1.01691 0.96136 0.88314 1.20510 0.79999 0.78165 0.90875 1.90679 1.67533 1.55392 1.34375 1.47592 1.31524 1.43311 1.10704 1.21832 0.98208 1.01986 0.85339 0.91460 0.89333 0.90905 0.91285 0.87051 0.89293 0.88634 0.91272 0.95678 0.92781 0.87471 0.88497 0.91306 0.89596 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.48 71.98 0.61 -0.98 16 2 C 0.14 2.26 3.55 45.09 0.16 2.42 16 3 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 4 C 0.03 0.50 4.72 86.25 0.41 0.91 16 5 N -0.55 -11.39 4.38 -900.88 -3.95 -15.34 16 6 C 0.07 1.37 4.32 86.31 0.37 1.74 16 7 C 0.03 0.86 2.24 -12.60 -0.03 0.84 16 8 H 0.12 3.27 6.50 -2.38 -0.02 3.25 16 9 C 0.26 10.16 13.67 89.44 1.22 11.38 16 10 N -0.52 -23.19 18.54 20.01 0.37 -22.82 16 11 C 0.00 -0.16 3.49 29.85 0.10 -0.06 16 12 C -0.53 -27.13 9.15 25.60 0.23 -26.89 16 13 H 0.03 1.76 7.84 -2.91 -0.02 1.73 16 14 C 0.00 0.19 5.47 84.65 0.46 0.65 16 15 N -0.96 -57.85 13.96 21.45 0.30 -57.55 16 16 Si 0.94 39.88 27.47 68.60 1.88 41.76 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.22 -7.60 6.54 99.48 0.65 -6.95 16 20 C 0.05 0.95 5.51 85.42 0.47 1.42 16 21 C 0.52 12.91 7.57 87.68 0.66 13.58 16 22 O -0.60 -19.34 16.07 -3.02 -0.05 -19.39 16 23 N -0.60 -12.15 3.11 -825.91 -2.57 -14.72 16 24 C 0.07 1.15 9.60 127.77 1.23 2.38 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.65 6.94 -2.39 -0.02 0.63 16 28 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 29 H 0.11 1.65 6.38 -2.39 -0.02 1.64 16 30 H 0.09 1.81 7.99 -2.39 -0.02 1.79 16 31 H 0.10 1.40 8.04 -2.39 -0.02 1.38 16 32 H 0.07 2.20 7.20 -2.39 -0.02 2.18 16 33 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.10 1.51 8.12 -2.39 -0.02 1.49 16 37 H 0.07 1.46 6.67 -2.39 -0.02 1.44 16 38 H 0.09 1.01 6.95 -2.39 -0.02 1.00 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -75.06 319.32 2.88 -72.19 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.98 Total: 8.47 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.91 Total: 7.39 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.85 Total: -110.42 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.88 Total: 41.76 kcal Total: -75.06 2.88 -72.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337442259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.382 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds