Wall clock time and date at job start Mon Mar 30 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46498 * 120.00108 * 2 1 4 4 C 1.50708 * 109.46930 * 269.99800 * 3 2 1 5 5 H 1.07993 * 119.99660 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99650 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00231 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99593 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47104 * 60.00085 * 8 6 4 10 10 H 1.48497 * 109.47088 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47206 * 299.99855 * 8 6 4 12 12 C 1.34779 * 120.00312 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00759 * 174.64450 * 12 2 1 14 14 C 1.50710 * 119.99304 * 354.64485 * 12 2 1 15 15 C 1.52999 * 109.47036 * 306.15603 * 14 12 2 16 16 C 1.52996 * 109.46605 * 186.15882 * 14 12 2 17 17 C 1.50697 * 109.47139 * 66.16008 * 14 12 2 18 18 C 1.39873 * 126.04188 * 7.17920 * 17 14 12 19 19 N 1.30834 * 108.20367 * 180.24352 * 18 17 14 20 20 N 1.40092 * 108.20390 * 359.58964 * 19 18 17 21 21 C 1.46500 * 126.03676 * 180.17151 * 20 19 18 22 22 C 1.34947 * 107.92539 * 0.41584 * 20 19 18 23 23 H 1.09005 * 109.47316 * 274.03212 * 1 2 3 24 24 H 1.08999 * 109.46987 * 34.03094 * 1 2 3 25 25 H 1.08995 * 109.47338 * 154.02891 * 1 2 3 26 26 H 1.08996 * 109.47247 * 29.99711 * 3 2 1 27 27 H 1.09003 * 109.47557 * 150.00016 * 3 2 1 28 28 H 0.97006 * 119.99756 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.46599 * 190.00565 * 15 14 12 30 30 H 1.08996 * 109.47639 * 310.00577 * 15 14 12 31 31 H 1.09004 * 109.47057 * 70.00640 * 15 14 12 32 32 H 1.09001 * 109.47175 * 299.99693 * 16 14 12 33 33 H 1.08999 * 109.47803 * 60.00124 * 16 14 12 34 34 H 1.09002 * 109.46878 * 180.02562 * 16 14 12 35 35 H 1.08001 * 125.89751 * 359.97242 * 18 17 14 36 36 H 1.09001 * 109.47140 * 270.28805 * 21 20 19 37 37 H 1.08997 * 109.46979 * 30.28690 * 21 20 19 38 38 H 1.09004 * 109.47118 * 150.28561 * 21 20 19 39 39 H 1.07997 * 126.12900 * 179.72200 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6733 8 14 3.4389 3.4162 -3.4340 9 1 2.1416 3.5941 -4.1345 10 1 4.1813 4.7022 -3.4341 11 1 4.2413 2.3809 -4.1337 12 6 2.1389 -1.1672 0.0005 13 8 3.3477 -1.1696 -0.0975 14 6 1.3902 -2.4694 0.1229 15 6 0.4956 -2.4287 1.3634 16 6 2.3887 -3.6214 0.2518 17 6 0.5394 -2.6769 -1.1035 18 6 0.5491 -1.8839 -2.2556 19 7 -0.3259 -2.3734 -3.0962 20 7 -0.9142 -3.5007 -2.5083 21 6 -1.9441 -4.3494 -3.1127 22 6 -0.3687 -3.6636 -1.2848 23 1 -0.3634 0.0723 1.0252 24 1 -0.3633 0.8517 -0.5751 25 1 -0.3634 -0.9238 -0.4500 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0311 4.4434 -0.8506 29 1 0.0922 -3.4234 1.5532 30 1 1.0813 -2.1040 2.2234 31 1 -0.3242 -1.7297 1.1974 32 1 3.0260 -3.6505 -0.6320 33 1 3.0041 -3.4715 1.1388 34 1 1.8472 -4.5634 0.3399 35 1 1.1686 -1.0147 -2.4210 36 1 -2.9303 -3.9619 -2.8572 37 1 -1.8239 -4.3510 -4.1960 38 1 -1.8444 -5.3669 -2.7346 39 1 -0.6134 -4.4416 -0.5769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344741922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:42 Heat of formation + Delta-G solvation = 53.351301 kcal Electronic energy + Delta-G solvation = -21113.853473 eV Core-core repulsion = 18059.067509 eV Total energy + Delta-G solvation = -3054.785964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44380 -39.12863 -35.05257 -34.78261 -32.85527 -32.42246 -29.29751 -28.03140 -26.91562 -26.50985 -25.82435 -23.67114 -21.91481 -20.91635 -19.90244 -18.11600 -17.11550 -16.38242 -15.67526 -15.32830 -15.19937 -14.56550 -14.36277 -14.27321 -13.55360 -13.19012 -13.03696 -12.97339 -12.55106 -12.33111 -12.08350 -12.02432 -11.96979 -11.78433 -11.41827 -11.27271 -11.09277 -10.83435 -10.68859 -10.47914 -10.26983 -10.08163 -9.56376 -9.27606 -8.70599 -8.36422 -8.18253 -7.51758 -5.97514 -4.01691 1.95578 2.57871 2.94199 3.37917 3.41345 3.44617 3.54861 4.06735 4.49242 4.53552 4.79783 4.99876 5.03189 5.10484 5.23819 5.33761 5.36460 5.39410 5.57976 5.77269 5.80088 5.87217 5.96902 6.00732 6.04042 6.15051 6.28628 6.32979 6.44846 6.57252 6.80685 7.05179 7.16683 7.51107 7.64953 7.82320 7.99185 8.30705 8.53937 8.97389 9.20853 9.63281 11.10428 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.006554 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.498040 B = 4271.311510 C = 5017.354543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.516 3.484 13 O -0.537 6.537 14 C -0.006 4.006 15 C -0.147 4.147 16 C -0.118 4.118 17 C -0.215 4.215 18 C 0.068 3.932 19 N -0.296 5.296 20 N -0.384 5.384 21 C 0.105 3.895 22 C 0.056 3.944 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.263 0.737 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.188 0.812 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.343 -16.405 1.446 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.127 3.873 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.302 3.698 13 O -0.414 6.414 14 C -0.011 4.011 15 C -0.205 4.205 16 C -0.176 4.176 17 C -0.227 4.227 18 C -0.118 4.118 19 N -0.117 5.117 20 N -0.166 5.166 21 C -0.036 4.036 22 C -0.089 4.089 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.205 0.795 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.278 -16.179 0.209 20.311 hybrid contribution 0.435 0.360 -0.197 0.598 sum -11.843 -15.819 0.012 19.761 Atomic orbital electron populations 1.22063 0.81814 1.03073 1.00264 1.48058 1.05973 1.07578 1.71235 1.19263 0.92365 0.78287 0.97405 1.21375 1.36283 1.06145 0.92265 0.92579 1.24909 0.95429 0.96431 0.97243 1.69920 1.38514 1.14371 1.30711 0.86607 0.78389 0.77813 0.84933 1.20257 1.21243 1.20150 1.20079 0.87688 0.84723 0.77321 1.90664 1.14214 1.86982 1.49581 1.19122 0.94551 0.94975 0.92428 1.22152 0.99859 1.02268 0.96191 1.21616 0.97929 0.95066 1.02991 1.19690 1.04625 1.00165 0.98191 1.24171 0.96573 0.99873 0.91214 1.77444 1.13194 0.99165 1.21882 1.48452 1.32492 1.23054 1.12637 1.21769 0.88960 0.92696 1.00196 1.22086 0.97144 1.00737 0.88960 0.93925 0.91505 0.90688 0.95126 0.94046 0.92756 0.92377 0.92106 0.90846 0.91903 0.92078 0.92945 0.79478 0.91016 0.89520 0.89810 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 8.01 59.84 0.48 1.71 16 2 N -0.60 -12.83 2.54 -182.95 -0.46 -13.29 16 3 C 0.25 6.51 5.14 -5.19 -0.03 6.48 16 4 C -0.52 -14.93 9.39 -34.43 -0.32 -15.25 16 5 H 0.06 1.59 7.49 -52.49 -0.39 1.20 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 8 Si 0.89 22.35 29.54 -169.99 -5.02 17.32 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.52 10.90 5.42 -10.98 -0.06 10.84 16 13 O -0.54 -13.76 15.62 5.56 0.09 -13.67 16 14 C -0.01 -0.09 0.67 -156.81 -0.11 -0.20 16 15 C -0.15 -1.83 7.75 37.16 0.29 -1.54 16 16 C -0.12 -1.71 7.71 37.16 0.29 -1.42 16 17 C -0.21 -3.20 3.00 -105.05 -0.32 -3.52 16 18 C 0.07 1.20 9.24 -17.37 -0.16 1.04 16 19 N -0.30 -4.91 12.58 30.62 0.39 -4.53 16 20 N -0.38 -4.78 4.01 -68.16 -0.27 -5.05 16 21 C 0.11 0.78 11.47 59.85 0.69 1.46 16 22 C 0.06 0.66 10.98 -17.22 -0.19 0.47 16 23 H 0.04 0.63 7.20 -51.93 -0.37 0.26 16 24 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 25 H 0.07 1.17 3.32 -51.93 -0.17 1.00 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.07 0.90 4.61 -51.93 -0.24 0.66 16 32 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.19 3.84 7.03 -52.49 -0.37 3.47 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -34.81 317.74 -5.01 -39.81 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.71 Total: -0.91 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 0.46 Total: 1.76 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.38 Total: -49.10 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.81 -5.01 -39.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344741922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.163 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds