Wall clock time and date at job start Mon Mar 30 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46498 * 120.00108 * 2 1 4 4 C 1.50708 * 109.46930 * 269.99800 * 3 2 1 5 5 H 1.07993 * 119.99660 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99650 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00231 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99593 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47104 * 60.00085 * 8 6 4 10 10 H 1.48497 * 109.47088 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47206 * 299.99855 * 8 6 4 12 12 C 1.34779 * 120.00312 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00759 * 174.64450 * 12 2 1 14 14 C 1.50710 * 119.99304 * 354.64485 * 12 2 1 15 15 C 1.52999 * 109.47036 * 306.15603 * 14 12 2 16 16 C 1.52996 * 109.46605 * 186.15882 * 14 12 2 17 17 C 1.50697 * 109.47139 * 66.16008 * 14 12 2 18 18 C 1.39873 * 126.04188 * 7.17920 * 17 14 12 19 19 N 1.30834 * 108.20367 * 180.24352 * 18 17 14 20 20 N 1.40092 * 108.20390 * 359.58964 * 19 18 17 21 21 C 1.46500 * 126.03676 * 180.17151 * 20 19 18 22 22 C 1.34947 * 107.92539 * 0.41584 * 20 19 18 23 23 H 1.09005 * 109.47316 * 274.03212 * 1 2 3 24 24 H 1.08999 * 109.46987 * 34.03094 * 1 2 3 25 25 H 1.08995 * 109.47338 * 154.02891 * 1 2 3 26 26 H 1.08996 * 109.47247 * 29.99711 * 3 2 1 27 27 H 1.09003 * 109.47557 * 150.00016 * 3 2 1 28 28 H 0.97006 * 119.99756 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.46599 * 190.00565 * 15 14 12 30 30 H 1.08996 * 109.47639 * 310.00577 * 15 14 12 31 31 H 1.09004 * 109.47057 * 70.00640 * 15 14 12 32 32 H 1.09001 * 109.47175 * 299.99693 * 16 14 12 33 33 H 1.08999 * 109.47803 * 60.00124 * 16 14 12 34 34 H 1.09002 * 109.46878 * 180.02562 * 16 14 12 35 35 H 1.08001 * 125.89751 * 359.97242 * 18 17 14 36 36 H 1.09001 * 109.47140 * 270.28805 * 21 20 19 37 37 H 1.08997 * 109.46979 * 30.28690 * 21 20 19 38 38 H 1.09004 * 109.47118 * 150.28561 * 21 20 19 39 39 H 1.07997 * 126.12900 * 179.72200 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6733 8 14 3.4389 3.4162 -3.4340 9 1 2.1416 3.5941 -4.1345 10 1 4.1813 4.7022 -3.4341 11 1 4.2413 2.3809 -4.1337 12 6 2.1389 -1.1672 0.0005 13 8 3.3477 -1.1696 -0.0975 14 6 1.3902 -2.4694 0.1229 15 6 0.4956 -2.4287 1.3634 16 6 2.3887 -3.6214 0.2518 17 6 0.5394 -2.6769 -1.1035 18 6 0.5491 -1.8839 -2.2556 19 7 -0.3259 -2.3734 -3.0962 20 7 -0.9142 -3.5007 -2.5083 21 6 -1.9441 -4.3494 -3.1127 22 6 -0.3687 -3.6636 -1.2848 23 1 -0.3634 0.0723 1.0252 24 1 -0.3633 0.8517 -0.5751 25 1 -0.3634 -0.9238 -0.4500 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0311 4.4434 -0.8506 29 1 0.0922 -3.4234 1.5532 30 1 1.0813 -2.1040 2.2234 31 1 -0.3242 -1.7297 1.1974 32 1 3.0260 -3.6505 -0.6320 33 1 3.0041 -3.4715 1.1388 34 1 1.8472 -4.5634 0.3399 35 1 1.1686 -1.0147 -2.4210 36 1 -2.9303 -3.9619 -2.8572 37 1 -1.8239 -4.3510 -4.1960 38 1 -1.8444 -5.3669 -2.7346 39 1 -0.6134 -4.4416 -0.5769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344741922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:42 Heat of formation + Delta-G solvation = 28.650284 kcal Electronic energy + Delta-G solvation = -21114.924589 eV Core-core repulsion = 18059.067509 eV Total energy + Delta-G solvation = -3055.857081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.58472 -40.66728 -36.64150 -36.38358 -34.56450 -33.80549 -30.36957 -29.90002 -28.02664 -27.59200 -27.32797 -25.47971 -23.34799 -22.12691 -21.12243 -19.54161 -18.76666 -18.21789 -17.26194 -16.70848 -16.35678 -16.23894 -15.94528 -15.41757 -14.94770 -14.62706 -14.26065 -14.17249 -13.81863 -13.56535 -13.52142 -13.38959 -13.19414 -13.03353 -12.96167 -12.86592 -12.59662 -12.52523 -12.40249 -12.18930 -11.84578 -11.69714 -11.39071 -10.64495 -10.40051 -10.32738 -9.38629 -9.22251 -8.22070 -6.35876 0.95773 1.33393 1.37513 1.44819 1.68997 1.74095 1.94461 2.33118 2.49622 3.06875 3.54507 3.67688 4.05987 4.16435 4.24625 4.30044 4.36559 4.51097 4.54041 4.66236 4.77135 4.80082 4.85819 4.88764 4.94313 4.98530 5.03043 5.11759 5.17719 5.26697 5.34655 5.47587 5.54406 5.61680 5.87694 6.07678 6.21704 6.70754 6.71241 6.84637 7.29409 7.54122 8.84593 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.006554 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.498040 B = 4271.311510 C = 5017.354543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.601 5.601 3 C 0.261 3.739 4 C -0.538 4.538 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.506 3.494 13 O -0.598 6.598 14 C 0.007 3.993 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.238 4.238 18 C 0.041 3.959 19 N -0.330 5.330 20 N -0.373 5.373 21 C 0.093 3.907 22 C 0.092 3.908 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.022 0.978 27 H -0.002 1.002 28 H 0.267 0.733 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.318 -19.464 1.512 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C 0.139 3.861 4 C -0.577 4.577 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.295 3.705 13 O -0.479 6.479 14 C 0.003 3.997 15 C -0.201 4.201 16 C -0.173 4.173 17 C -0.250 4.250 18 C -0.144 4.144 19 N -0.152 5.152 20 N -0.155 5.155 21 C -0.047 4.047 22 C -0.055 4.055 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.016 0.984 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.159 0.841 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.143 0.857 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.311 -19.243 0.265 24.592 hybrid contribution 1.296 1.220 -0.244 1.796 sum -14.015 -18.023 0.021 22.831 Atomic orbital electron populations 1.22262 0.78880 1.03668 1.02028 1.48019 1.07735 1.06252 1.71104 1.18727 0.90927 0.80579 0.95840 1.21634 1.36592 1.06393 0.93033 0.93347 1.25780 0.95006 0.96449 1.01637 1.70031 1.39001 1.14799 1.32838 0.85573 0.78751 0.77494 0.79647 1.18815 1.19884 1.20567 1.21305 0.87423 0.86468 0.75329 1.90616 1.17120 1.88026 1.52120 1.19059 0.94849 0.91157 0.94659 1.22178 0.98960 1.05241 0.93689 1.21642 0.97739 0.96808 1.01096 1.19598 1.06528 1.01685 0.97158 1.23637 0.97545 0.99943 0.93297 1.77351 1.13860 1.01339 1.22692 1.48872 1.32123 1.21673 1.12810 1.22265 0.88276 0.93876 1.00244 1.22739 0.94209 0.99770 0.88823 0.90970 0.93010 0.88449 0.95966 0.98437 0.92399 0.87625 0.93127 0.90525 0.94941 0.93057 0.88043 0.84079 0.89157 0.89828 0.85735 0.75561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.54 8.01 127.77 1.02 3.56 16 2 N -0.60 -27.14 2.54 -851.13 -2.16 -29.30 16 3 C 0.26 14.76 5.14 85.64 0.44 15.20 16 4 C -0.54 -32.57 9.39 25.60 0.24 -32.33 16 5 H 0.05 2.94 7.49 -2.91 -0.02 2.91 16 6 C 0.01 0.62 5.46 84.66 0.46 1.08 16 7 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 8 Si 0.96 47.26 29.54 68.60 2.03 49.29 16 9 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.51 22.36 5.42 87.66 0.48 22.83 16 13 O -0.60 -32.90 15.62 -3.02 -0.05 -32.95 16 14 C 0.01 0.21 0.67 -53.67 -0.04 0.18 16 15 C -0.14 -3.03 7.75 71.98 0.56 -2.48 16 16 C -0.12 -3.13 7.71 71.98 0.55 -2.58 16 17 C -0.24 -6.60 3.00 -20.14 -0.06 -6.66 16 18 C 0.04 1.46 9.24 85.24 0.79 2.25 16 19 N -0.33 -10.69 12.58 -57.02 -0.72 -11.41 16 20 N -0.37 -7.81 4.01 -369.56 -1.48 -9.29 16 21 C 0.09 0.91 11.47 127.77 1.47 2.37 16 22 C 0.09 1.67 10.98 83.54 0.92 2.59 16 23 H 0.07 2.05 7.20 -2.38 -0.02 2.03 16 24 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 25 H 0.10 2.95 3.32 -2.39 -0.01 2.94 16 26 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 27 H 0.00 -0.16 7.50 -2.39 -0.02 -0.18 16 28 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 29 H 0.11 1.28 8.11 -2.38 -0.02 1.26 16 30 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 31 H 0.08 1.57 4.61 -2.39 -0.01 1.56 16 32 H 0.03 1.06 8.03 -2.39 -0.02 1.04 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.73 8.13 -2.39 -0.02 1.71 16 35 H 0.14 6.33 7.03 -2.91 -0.02 6.31 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 39 H 0.23 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -84.41 317.74 5.77 -78.64 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.04 Total: 6.58 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.83 Total: 6.02 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.07 Total: -107.58 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -84.41 5.77 -78.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344741922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.289 kcal (2) G-P(sol) polarization free energy of solvation -84.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds