Wall clock time and date at job start Mon Mar 30 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52997 * 109.46817 * 239.99873 * 2 1 3 5 5 C 1.50696 * 109.47242 * 60.00357 * 4 2 1 6 6 H 1.08004 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00363 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99396 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99959 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47227 * 90.00150 * 9 7 5 11 11 H 1.48498 * 109.46812 * 209.99557 * 9 7 5 12 12 H 1.48494 * 109.47357 * 329.99632 * 9 7 5 13 13 C 1.53006 * 109.46977 * 120.00142 * 2 1 3 14 14 N 1.46496 * 109.46995 * 299.99668 * 13 2 1 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 2 16 16 O 1.21279 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99773 * 180.02562 * 15 14 13 18 18 N 1.46506 * 109.47289 * 179.97438 * 17 15 14 19 19 C 1.36878 * 126.39427 * 89.99836 * 18 17 15 20 20 C 1.34671 * 106.81587 * 180.02562 * 19 18 17 21 21 N 1.34126 * 108.01939 * 359.97438 * 20 19 18 22 22 C 1.30504 * 109.25858 * 359.72893 * 21 20 19 23 23 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 24 24 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 25 25 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 28 28 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 29 29 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.47261 * 300.00059 * 4 2 1 31 31 H 0.96999 * 119.99718 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46509 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.46801 * 59.99813 * 13 2 1 34 34 H 0.96998 * 120.00192 * 359.97438 * 14 13 2 35 35 H 1.09001 * 109.47438 * 59.99564 * 17 15 14 36 36 H 1.09004 * 109.47113 * 299.99819 * 17 15 14 37 37 H 1.08001 * 126.59558 * 359.96109 * 19 18 17 38 38 H 1.08004 * 125.99140 * 180.02562 * 20 19 18 39 39 H 1.07994 * 125.64997 * 180.28871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6262 -1.5515 -3.8526 9 14 1.2470 0.3980 -5.2572 10 1 2.2250 1.4395 -5.6620 11 1 1.0816 -0.5814 -6.3611 12 1 -0.0610 1.0356 -4.9610 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5749 -1.4770 3.7807 17 6 1.3750 0.2192 4.9000 18 7 1.8634 -0.4714 6.0962 19 6 3.0335 -0.2178 6.7595 20 6 3.0884 -1.0769 7.7951 21 7 1.9817 -1.8340 7.7652 22 6 1.2402 -1.4728 6.7538 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1299 -0.7217 -1.2491 30 1 1.6766 -1.7490 -1.2492 31 1 2.8605 -1.8830 -4.7336 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9944 0.7582 2.3564 35 1 0.2850 0.2185 4.9000 36 1 1.7376 1.2472 4.8999 37 1 3.7715 0.5273 6.5014 38 1 3.8837 -1.1439 8.5227 39 1 0.2877 -1.9052 6.4855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360611474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:38 Heat of formation + Delta-G solvation = 14.156362 kcal Electronic energy + Delta-G solvation = -19764.008871 eV Core-core repulsion = 16707.523287 eV Total energy + Delta-G solvation = -3056.485584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.15520 -39.71911 -37.28141 -34.08751 -33.79531 -32.19184 -29.61417 -28.50349 -27.12665 -26.63745 -25.85687 -23.03518 -21.44058 -21.42145 -20.49936 -18.69011 -17.56774 -17.30648 -16.40052 -15.71343 -15.44176 -14.80334 -14.57830 -14.44095 -13.97010 -13.82713 -13.62055 -13.32816 -13.15068 -12.87746 -12.75029 -12.15663 -12.13665 -11.27751 -11.09976 -10.92909 -10.73492 -10.52518 -10.44601 -10.34454 -10.09236 -9.99268 -9.64470 -9.25141 -9.01397 -8.97179 -8.58095 -8.42721 -6.06551 -4.08480 1.87976 2.43838 2.49981 3.12029 3.25963 3.27097 3.33591 3.34854 4.36014 4.39000 4.51832 4.62998 4.64449 4.75788 5.28810 5.33683 5.35982 5.48850 5.58807 5.61292 6.02389 6.07544 6.10538 6.13242 6.24946 6.35564 6.51354 6.59459 6.63346 6.93848 6.96268 6.99309 7.01957 7.44880 7.55740 7.66716 7.91331 7.98555 8.10679 8.32586 8.96230 9.55137 11.04878 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.055090 B = 0.003262 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.133841 B = 8582.462354 C = 8718.916944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.487 3.513 16 O -0.525 6.525 17 C 0.085 3.915 18 N -0.444 5.444 19 C -0.046 4.046 20 C -0.032 4.032 21 N -0.496 5.496 22 C 0.192 3.808 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 7.427 16.712 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.270 3.730 16 O -0.401 6.401 17 C -0.042 4.042 18 N -0.127 5.127 19 C -0.178 4.178 20 C -0.179 4.179 21 N -0.214 5.214 22 C -0.090 4.090 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.189 0.811 38 H 0.186 0.814 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.665 6.025 17.091 18.489 hybrid contribution -0.284 1.425 -1.755 2.279 sum -3.949 7.451 15.335 17.501 Atomic orbital electron populations 1.21766 0.95162 1.01233 1.00282 1.20923 0.95543 0.95882 0.94969 1.21767 1.00585 0.95813 1.00275 1.19089 0.96373 0.95242 0.89430 1.21160 1.31388 1.12137 0.90482 0.92242 1.25018 0.95277 0.95037 0.99137 1.69958 1.36833 1.22932 1.23553 0.86639 0.79176 0.79421 0.83023 1.20746 1.21291 1.19929 1.21691 0.99042 0.96092 0.82590 1.46157 1.53046 1.31977 1.05623 1.20664 0.81802 0.85567 0.84943 1.90802 1.37121 1.25707 1.86422 1.21722 1.02168 0.97511 0.82825 1.44994 1.17604 1.28944 1.21160 1.22676 0.91416 1.06174 0.97584 1.22239 0.98456 0.96640 1.00544 1.70275 1.05126 1.25756 1.20254 1.24945 1.00779 0.91245 0.92043 0.95302 0.91294 0.93305 0.93332 0.91295 0.95312 0.96353 0.96328 0.92956 0.91655 0.91611 0.76468 0.85922 0.86155 0.81104 0.81438 0.78131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 4 C 0.04 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.18 7.65 -34.44 -0.26 -13.44 16 6 H 0.06 1.46 5.68 -52.48 -0.30 1.16 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.13 2.07 4.56 -4.04 -0.02 2.05 16 14 N -0.72 -8.56 4.96 -60.29 -0.30 -8.86 16 15 C 0.49 6.05 7.90 -10.98 -0.09 5.96 16 16 O -0.52 -9.30 16.43 5.56 0.09 -9.21 16 17 C 0.08 0.66 6.63 -5.19 -0.03 0.62 16 18 N -0.44 -4.75 2.24 -119.86 -0.27 -5.02 16 19 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 20 C -0.03 -0.38 11.87 -17.81 -0.21 -0.60 16 21 N -0.50 -6.94 11.25 -14.67 -0.16 -7.10 16 22 C 0.19 2.26 12.56 -90.37 -1.14 1.13 16 23 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 24 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16 28 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 3.66 6.16 -40.82 -0.25 3.41 16 35 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.20 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -33.99 324.33 -7.41 -41.40 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.74 Total: 1.02 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.64 Total: -7.60 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.00 Total: -46.16 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.99 -7.41 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360611474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.555 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds