Wall clock time and date at job start Mon Mar 30 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52997 * 109.46817 * 239.99873 * 2 1 3 5 5 C 1.50696 * 109.47242 * 60.00357 * 4 2 1 6 6 H 1.08004 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00363 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99396 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99959 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47227 * 90.00150 * 9 7 5 11 11 H 1.48498 * 109.46812 * 209.99557 * 9 7 5 12 12 H 1.48494 * 109.47357 * 329.99632 * 9 7 5 13 13 C 1.53006 * 109.46977 * 120.00142 * 2 1 3 14 14 N 1.46496 * 109.46995 * 299.99668 * 13 2 1 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 2 16 16 O 1.21279 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99773 * 180.02562 * 15 14 13 18 18 N 1.46506 * 109.47289 * 179.97438 * 17 15 14 19 19 C 1.36878 * 126.39427 * 89.99836 * 18 17 15 20 20 C 1.34671 * 106.81587 * 180.02562 * 19 18 17 21 21 N 1.34126 * 108.01939 * 359.97438 * 20 19 18 22 22 C 1.30504 * 109.25858 * 359.72893 * 21 20 19 23 23 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 24 24 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 25 25 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 28 28 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 29 29 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.47261 * 300.00059 * 4 2 1 31 31 H 0.96999 * 119.99718 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46509 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.46801 * 59.99813 * 13 2 1 34 34 H 0.96998 * 120.00192 * 359.97438 * 14 13 2 35 35 H 1.09001 * 109.47438 * 59.99564 * 17 15 14 36 36 H 1.09004 * 109.47113 * 299.99819 * 17 15 14 37 37 H 1.08001 * 126.59558 * 359.96109 * 19 18 17 38 38 H 1.08004 * 125.99140 * 180.02562 * 20 19 18 39 39 H 1.07994 * 125.64997 * 180.28871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6262 -1.5515 -3.8526 9 14 1.2470 0.3980 -5.2572 10 1 2.2250 1.4395 -5.6620 11 1 1.0816 -0.5814 -6.3611 12 1 -0.0610 1.0356 -4.9610 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5749 -1.4770 3.7807 17 6 1.3750 0.2192 4.9000 18 7 1.8634 -0.4714 6.0962 19 6 3.0335 -0.2178 6.7595 20 6 3.0884 -1.0769 7.7951 21 7 1.9817 -1.8340 7.7652 22 6 1.2402 -1.4728 6.7538 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1299 -0.7217 -1.2491 30 1 1.6766 -1.7490 -1.2492 31 1 2.8605 -1.8830 -4.7336 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9944 0.7582 2.3564 35 1 0.2850 0.2185 4.9000 36 1 1.7376 1.2472 4.8999 37 1 3.7715 0.5273 6.5014 38 1 3.8837 -1.1439 8.5227 39 1 0.2877 -1.9052 6.4855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360611474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:38 Heat of formation + Delta-G solvation = -7.872996 kcal Electronic energy + Delta-G solvation = -19764.964136 eV Core-core repulsion = 16707.523287 eV Total energy + Delta-G solvation = -3057.440849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.96381 -40.82370 -38.68361 -35.30092 -34.91124 -33.94261 -30.44296 -29.60158 -28.81808 -27.94347 -27.08339 -24.82972 -22.38776 -22.26102 -21.46504 -20.00768 -18.51806 -18.34048 -18.30032 -16.72667 -16.65700 -16.33603 -15.81595 -15.46470 -14.97783 -14.89064 -14.82104 -14.54907 -14.26628 -14.05933 -13.93472 -13.90562 -13.19103 -12.86257 -12.72616 -12.57803 -12.32617 -12.23082 -11.98594 -11.53599 -11.50397 -11.03926 -10.95812 -10.88035 -10.52453 -10.43533 -10.13958 -9.40697 -8.15038 -6.23017 1.04798 1.42457 1.42848 1.50074 1.53025 1.77238 2.24763 2.33909 2.44979 3.19865 3.66579 3.85893 3.89794 3.96631 4.05694 4.08080 4.20643 4.23127 4.60191 4.68426 4.71277 4.78188 4.79467 4.97655 5.10089 5.14318 5.30759 5.37046 5.45071 5.51677 5.55024 5.56611 5.80716 5.83787 5.89722 6.21641 6.29398 6.53024 6.93039 7.15108 7.18611 7.45276 8.97561 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.055090 B = 0.003262 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.133841 B = 8582.462354 C = 8718.916944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.257 1.257 13 C 0.143 3.857 14 N -0.699 5.699 15 C 0.488 3.512 16 O -0.585 6.585 17 C 0.093 3.907 18 N -0.447 5.447 19 C -0.046 4.046 20 C -0.061 4.061 21 N -0.539 5.539 22 C 0.182 3.818 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.077 0.923 29 H -0.017 1.017 30 H -0.017 1.017 31 H 0.259 0.741 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.419 0.581 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 10.501 17.620 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.181 1.181 13 C 0.019 3.981 14 N -0.353 5.353 15 C 0.274 3.726 16 O -0.464 6.464 17 C -0.033 4.033 18 N -0.129 5.129 19 C -0.178 4.178 20 C -0.207 4.207 21 N -0.258 5.258 22 C -0.101 4.101 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.258 0.742 35 H 0.183 0.817 36 H 0.179 0.821 37 H 0.215 0.785 38 H 0.197 0.803 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.651 9.161 18.009 20.980 hybrid contribution 0.357 0.429 -2.002 2.078 sum -5.294 9.589 16.008 19.396 Atomic orbital electron populations 1.21706 0.93271 1.00968 1.01988 1.20711 0.96914 0.96378 0.92501 1.21707 0.99812 0.94419 1.01999 1.18986 0.94145 0.94170 0.92645 1.21609 1.30372 1.12074 0.90998 0.90692 1.25967 0.95707 0.95831 1.02822 1.70123 1.38897 1.25032 1.24088 0.85545 0.79263 0.78081 0.78765 1.20191 1.21777 1.18120 1.21172 0.97627 0.95323 0.84016 1.45849 1.52983 1.32162 1.04333 1.21531 0.80352 0.84703 0.85995 1.90796 1.39816 1.28552 1.87244 1.22024 1.04520 0.97907 0.78802 1.45181 1.17374 1.28765 1.21626 1.23134 0.91781 1.06022 0.96903 1.22636 0.98783 0.97342 1.01934 1.70221 1.06362 1.27170 1.22014 1.25469 1.01483 0.91390 0.91732 0.90366 0.92714 0.94635 0.94664 0.92666 0.90393 0.99868 0.99846 0.93218 0.93917 0.93874 0.74165 0.81659 0.82106 0.78532 0.80310 0.75766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.05 71.98 0.58 -3.03 16 2 C -0.06 -2.21 0.54 -52.18 -0.03 -2.24 16 3 C -0.12 -3.60 8.05 71.98 0.58 -3.02 16 4 C 0.04 1.87 4.04 29.85 0.12 1.99 16 5 C -0.51 -26.56 7.65 25.60 0.20 -26.37 16 6 H 0.08 3.59 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -56.57 13.29 21.45 0.28 -56.28 16 9 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 C 0.14 4.58 4.56 86.38 0.39 4.97 16 14 N -0.70 -14.48 4.96 -463.06 -2.30 -16.77 16 15 C 0.49 10.72 7.90 87.66 0.69 11.41 16 16 O -0.58 -20.33 16.43 -3.03 -0.05 -20.38 16 17 C 0.09 0.98 6.63 85.63 0.57 1.55 16 18 N -0.45 -8.25 2.24 -533.13 -1.19 -9.45 16 19 C -0.05 -0.90 11.58 83.09 0.96 0.07 16 20 C -0.06 -1.44 11.87 83.52 0.99 -0.45 16 21 N -0.54 -14.82 11.25 -200.31 -2.25 -17.07 16 22 C 0.18 3.96 12.56 180.26 2.26 6.23 16 23 H 0.08 1.53 6.86 -2.39 -0.02 1.51 16 24 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 28 H 0.08 1.52 6.86 -2.39 -0.02 1.51 16 29 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 31 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.42 5.34 6.16 -92.71 -0.57 4.77 16 35 H 0.17 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.16 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.18 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -79.90 324.33 4.77 -75.12 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.47 Total: 9.02 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 7.78 Total: -8.78 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -5.46 Total: -99.57 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -79.90 4.77 -75.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360611474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.251 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds