Wall clock time and date at job start Mon Mar 30 2020 04:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47168 * 290.89170 * 3 2 1 5 5 C 1.37104 * 119.99948 * 94.85041 * 4 3 2 6 6 H 1.08005 * 119.99328 * 320.44488 * 5 4 3 7 7 C 1.38941 * 119.99824 * 140.44829 * 5 4 3 8 8 N 1.31412 * 119.99759 * 157.85811 * 7 5 4 9 9 Si 1.86797 * 120.00389 * 337.85266 * 7 5 4 10 10 H 1.48510 * 109.47066 * 95.15324 * 9 7 5 11 11 H 1.48499 * 109.47335 * 215.14944 * 9 7 5 12 12 H 1.48494 * 109.47288 * 335.15431 * 9 7 5 13 13 C 1.34773 * 119.99872 * 274.56889 * 4 3 2 14 14 O 1.21297 * 119.99741 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00073 * 0.02562 * 13 4 3 16 16 C 1.53002 * 109.46965 * 179.97438 * 15 13 4 17 17 H 1.08998 * 109.47673 * 54.99776 * 16 15 13 18 18 C 1.52999 * 109.46861 * 294.99684 * 16 15 13 19 19 C 1.53004 * 109.47131 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47069 * 60.00091 * 19 18 16 21 21 C 1.53004 * 109.47138 * 300.00277 * 20 19 18 22 22 C 1.52995 * 109.46992 * 174.99988 * 16 15 13 23 23 H 1.08994 * 109.47445 * 299.99919 * 22 16 15 24 24 N 1.46903 * 109.47272 * 59.99912 * 22 16 15 25 25 H 1.09006 * 109.47159 * 170.89011 * 3 2 1 26 26 H 1.09002 * 109.47269 * 50.89517 * 3 2 1 27 27 H 0.97000 * 120.00428 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.47039 * 299.99628 * 15 13 4 29 29 H 1.08992 * 109.46844 * 59.99916 * 15 13 4 30 30 H 1.09000 * 109.47726 * 300.00161 * 18 16 15 31 31 H 1.09005 * 109.47195 * 60.00675 * 18 16 15 32 32 H 1.09002 * 109.47213 * 180.02562 * 19 18 16 33 33 H 1.09006 * 109.47053 * 300.00211 * 19 18 16 34 34 H 1.08998 * 109.47085 * 59.99806 * 20 19 18 35 35 H 1.08998 * 109.47277 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47035 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.47020 * 299.99902 * 21 20 19 38 38 H 1.00897 * 111.00250 * 180.02562 * 24 22 16 39 39 H 1.00896 * 111.00071 * 303.95306 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.4917 1.2904 5 6 3.4203 -1.8154 1.4410 6 1 2.8089 -2.5767 0.9795 7 6 4.5349 -2.1773 2.1875 8 7 4.6185 -3.3843 2.7004 9 14 5.9147 -0.9484 2.4619 10 1 5.7124 -0.2591 3.7617 11 1 7.2171 -1.6616 2.4774 12 1 5.9114 0.0526 1.3650 13 6 3.2332 0.3578 2.3278 14 8 3.6381 -0.0498 3.3960 15 6 2.8828 1.8140 2.1605 16 6 3.1260 2.5517 3.4787 17 1 4.1533 2.3864 3.8034 18 6 2.1632 2.0235 4.5439 19 6 2.4060 2.7616 5.8619 20 6 2.1696 4.2594 5.6586 21 6 3.1325 4.7877 4.5933 22 6 2.8901 4.0496 3.2758 23 1 3.5760 4.4260 2.5169 24 7 1.5056 4.2725 2.8382 25 1 2.9709 1.0156 -0.1627 26 1 2.9717 -0.6474 -0.7975 27 1 5.3964 -3.6370 3.2219 28 1 3.5054 2.2501 1.3794 29 1 1.8330 1.9053 1.8818 30 1 1.1358 2.1887 4.2193 31 1 2.3313 0.9562 4.6885 32 1 1.7203 2.3850 6.6210 33 1 3.4333 2.5967 6.1869 34 1 1.1424 4.4244 5.3337 35 1 2.3430 4.7854 6.5974 36 1 2.9644 5.8549 4.4488 37 1 4.1598 4.6227 4.9182 38 1 1.3247 5.2550 2.6968 39 1 1.3006 3.7437 2.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383499139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:46 Heat of formation + Delta-G solvation = -7.716224 kcal Electronic energy + Delta-G solvation = -21223.190550 eV Core-core repulsion = 18165.756499 eV Total energy + Delta-G solvation = -3057.434051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78944 -38.31229 -36.25157 -34.46717 -33.08555 -32.43589 -31.71056 -28.74741 -27.74902 -26.88757 -24.02771 -22.09440 -21.35802 -19.62526 -18.72448 -17.87171 -17.14525 -16.11936 -15.77763 -15.38636 -15.02879 -14.54773 -14.17759 -14.00984 -13.69645 -13.32969 -13.15524 -12.99448 -12.60671 -12.45570 -12.35040 -12.02313 -11.83390 -11.64181 -11.46152 -11.20104 -11.07409 -10.95516 -10.67309 -10.27993 -10.14783 -10.02300 -9.88022 -9.77953 -8.63980 -8.58036 -8.51135 -7.86187 -6.26621 -4.04207 3.01053 3.16059 3.22912 3.39103 3.61416 3.72952 4.34850 4.46025 4.55491 4.57565 4.85245 4.96116 5.09706 5.12536 5.34346 5.37999 5.50221 5.55773 5.64660 5.66351 5.71990 5.82690 5.87532 5.93120 6.01152 6.03167 6.20987 6.31648 6.48537 6.53411 6.56094 6.90354 6.98935 7.20982 7.47433 7.74412 7.79874 7.92959 8.62956 8.78573 9.31757 9.64145 10.78069 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.008031 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.176479 B = 3485.700711 C = 4390.860421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.202 3.798 3 C 0.192 3.808 4 N -0.462 5.462 5 C -0.363 4.363 6 H 0.095 0.905 7 C 0.097 3.903 8 N -0.858 5.858 9 Si 0.912 3.088 10 H -0.252 1.252 11 H -0.309 1.309 12 H -0.281 1.281 13 C 0.453 3.547 14 O -0.523 6.523 15 C -0.139 4.139 16 C -0.061 4.061 17 H 0.077 0.923 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.109 4.109 22 C 0.095 3.905 23 H 0.030 0.970 24 N -0.840 5.840 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.274 0.726 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.334 0.666 39 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 15.994 -1.543 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.118 4.118 3 C 0.065 3.935 4 N -0.186 5.186 5 C -0.488 4.488 6 H 0.112 0.888 7 C -0.113 4.113 8 N -0.492 5.492 9 Si 0.743 3.257 10 H -0.177 1.177 11 H -0.239 1.239 12 H -0.207 1.207 13 C 0.243 3.757 14 O -0.403 6.403 15 C -0.179 4.179 16 C -0.080 4.080 17 H 0.095 0.905 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.016 4.016 23 H 0.048 0.952 24 N -0.371 5.371 25 H 0.120 0.880 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.053 15.291 -0.180 15.429 hybrid contribution 1.550 0.829 -0.915 1.982 sum -0.502 16.119 -1.095 16.164 Atomic orbital electron populations 1.81091 1.13415 1.09482 1.08324 1.30286 0.96138 0.92463 0.92868 1.19125 0.80528 1.02329 0.91552 1.43613 1.59362 1.09419 1.06161 1.18801 1.12074 0.79563 1.38318 0.88759 1.25243 0.97547 0.95724 0.92801 1.69769 1.29228 1.20768 1.29422 0.86386 0.78329 0.80898 0.80120 1.17734 1.23887 1.20661 1.20364 0.82920 0.87793 0.84593 1.90524 1.46380 1.77564 1.25869 1.21781 1.02296 0.94680 0.99190 1.20894 1.00928 0.91659 0.94528 0.90512 1.21558 0.98778 1.01155 0.93241 1.21467 1.00934 0.94838 0.97934 1.21407 1.00347 0.95967 0.96950 1.21517 0.99677 0.98392 0.95136 1.21362 0.88652 0.95918 0.95701 0.95179 1.58735 1.24328 1.13312 1.40722 0.88040 0.85828 0.91647 0.90498 0.89928 0.91819 0.89857 0.92702 0.92728 0.90943 0.93431 0.92726 0.91918 0.85390 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.37 18.54 42.16 0.78 -7.59 16 2 C 0.20 3.41 15.17 -20.76 -0.31 3.10 16 3 C 0.19 2.96 5.65 -6.83 -0.04 2.93 16 4 N -0.46 -9.95 2.19 -117.93 -0.26 -10.21 16 5 C -0.36 -9.53 9.71 -14.93 -0.15 -9.67 16 6 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 7 C 0.10 2.71 4.78 -17.47 -0.08 2.63 16 8 N -0.86 -25.31 13.96 55.50 0.77 -24.54 16 9 Si 0.91 22.66 24.80 -169.99 -4.22 18.45 16 10 H -0.25 -6.57 6.22 56.52 0.35 -6.22 16 11 H -0.31 -7.68 7.11 56.52 0.40 -7.27 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.45 9.72 5.59 -10.98 -0.06 9.66 16 14 O -0.52 -13.27 9.16 5.54 0.05 -13.21 16 15 C -0.14 -2.20 3.30 -27.88 -0.09 -2.30 16 16 C -0.06 -0.95 1.66 -90.62 -0.15 -1.10 16 17 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 18 C -0.11 -1.85 4.79 -26.73 -0.13 -1.98 16 19 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 20 C -0.11 -1.34 5.77 -26.73 -0.15 -1.49 16 21 C -0.11 -1.25 5.60 -26.76 -0.15 -1.40 16 22 C 0.09 1.14 3.09 -67.74 -0.21 0.93 16 23 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 24 N -0.84 -9.12 7.69 -4.69 -0.04 -9.15 16 25 H 0.10 1.15 6.63 -51.93 -0.34 0.81 16 26 H 0.12 1.67 8.00 -51.93 -0.42 1.25 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 28 H 0.08 1.02 7.41 -51.93 -0.38 0.63 16 29 H 0.08 1.23 6.29 -51.93 -0.33 0.90 16 30 H 0.06 1.08 7.60 -51.93 -0.39 0.68 16 31 H 0.08 1.72 5.95 -51.93 -0.31 1.41 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.33 2.95 9.04 -39.29 -0.36 2.59 16 39 H 0.34 3.63 7.15 -39.29 -0.28 3.35 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -32.24 306.63 -5.73 -37.97 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.76 Total: 4.19 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.69 Total: -0.51 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 1.26 Total: -51.50 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.05 Total: -13.21 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.22 Total: 18.45 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.24 -5.73 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383499139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.250 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds