Wall clock time and date at job start Mon Mar 30 2020 04:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47168 * 290.89170 * 3 2 1 5 5 C 1.37104 * 119.99948 * 94.85041 * 4 3 2 6 6 H 1.08005 * 119.99328 * 320.44488 * 5 4 3 7 7 C 1.38941 * 119.99824 * 140.44829 * 5 4 3 8 8 N 1.31412 * 119.99759 * 157.85811 * 7 5 4 9 9 Si 1.86797 * 120.00389 * 337.85266 * 7 5 4 10 10 H 1.48510 * 109.47066 * 95.15324 * 9 7 5 11 11 H 1.48499 * 109.47335 * 215.14944 * 9 7 5 12 12 H 1.48494 * 109.47288 * 335.15431 * 9 7 5 13 13 C 1.34773 * 119.99872 * 274.56889 * 4 3 2 14 14 O 1.21297 * 119.99741 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00073 * 0.02562 * 13 4 3 16 16 C 1.53002 * 109.46965 * 179.97438 * 15 13 4 17 17 H 1.08998 * 109.47673 * 54.99776 * 16 15 13 18 18 C 1.52999 * 109.46861 * 294.99684 * 16 15 13 19 19 C 1.53004 * 109.47131 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47069 * 60.00091 * 19 18 16 21 21 C 1.53004 * 109.47138 * 300.00277 * 20 19 18 22 22 C 1.52995 * 109.46992 * 174.99988 * 16 15 13 23 23 H 1.08994 * 109.47445 * 299.99919 * 22 16 15 24 24 N 1.46903 * 109.47272 * 59.99912 * 22 16 15 25 25 H 1.09006 * 109.47159 * 170.89011 * 3 2 1 26 26 H 1.09002 * 109.47269 * 50.89517 * 3 2 1 27 27 H 0.97000 * 120.00428 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.47039 * 299.99628 * 15 13 4 29 29 H 1.08992 * 109.46844 * 59.99916 * 15 13 4 30 30 H 1.09000 * 109.47726 * 300.00161 * 18 16 15 31 31 H 1.09005 * 109.47195 * 60.00675 * 18 16 15 32 32 H 1.09002 * 109.47213 * 180.02562 * 19 18 16 33 33 H 1.09006 * 109.47053 * 300.00211 * 19 18 16 34 34 H 1.08998 * 109.47085 * 59.99806 * 20 19 18 35 35 H 1.08998 * 109.47277 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.47035 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.47020 * 299.99902 * 21 20 19 38 38 H 1.00897 * 111.00250 * 180.02562 * 24 22 16 39 39 H 1.00896 * 111.00071 * 303.95306 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.4917 1.2904 5 6 3.4203 -1.8154 1.4410 6 1 2.8089 -2.5767 0.9795 7 6 4.5349 -2.1773 2.1875 8 7 4.6185 -3.3843 2.7004 9 14 5.9147 -0.9484 2.4619 10 1 5.7124 -0.2591 3.7617 11 1 7.2171 -1.6616 2.4774 12 1 5.9114 0.0526 1.3650 13 6 3.2332 0.3578 2.3278 14 8 3.6381 -0.0498 3.3960 15 6 2.8828 1.8140 2.1605 16 6 3.1260 2.5517 3.4787 17 1 4.1533 2.3864 3.8034 18 6 2.1632 2.0235 4.5439 19 6 2.4060 2.7616 5.8619 20 6 2.1696 4.2594 5.6586 21 6 3.1325 4.7877 4.5933 22 6 2.8901 4.0496 3.2758 23 1 3.5760 4.4260 2.5169 24 7 1.5056 4.2725 2.8382 25 1 2.9709 1.0156 -0.1627 26 1 2.9717 -0.6474 -0.7975 27 1 5.3964 -3.6370 3.2219 28 1 3.5054 2.2501 1.3794 29 1 1.8330 1.9053 1.8818 30 1 1.1358 2.1887 4.2193 31 1 2.3313 0.9562 4.6885 32 1 1.7203 2.3850 6.6210 33 1 3.4333 2.5967 6.1869 34 1 1.1424 4.4244 5.3337 35 1 2.3430 4.7854 6.5974 36 1 2.9644 5.8549 4.4488 37 1 4.1598 4.6227 4.9182 38 1 1.3247 5.2550 2.6968 39 1 1.3006 3.7437 2.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383499139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:46 Heat of formation + Delta-G solvation = -30.778669 kcal Electronic energy + Delta-G solvation = -21224.190613 eV Core-core repulsion = 18165.756499 eV Total energy + Delta-G solvation = -3058.434113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27551 -39.58627 -37.73291 -36.14667 -34.40403 -33.97539 -33.09224 -29.83306 -29.27342 -28.17974 -25.72187 -23.25952 -22.63182 -21.18482 -19.84597 -19.55558 -18.59680 -17.66377 -17.16674 -16.56577 -16.44019 -15.86079 -15.55691 -15.30647 -15.01438 -14.86943 -14.54641 -14.44241 -14.31410 -13.93970 -13.67181 -13.35507 -13.11552 -12.98010 -12.75253 -12.59985 -12.41833 -12.39055 -12.06572 -11.92431 -11.74741 -11.38929 -11.01469 -10.99303 -10.66104 -10.30381 -9.74389 -9.35719 -8.37038 -6.12950 1.31133 1.42909 1.59720 1.61153 1.83423 2.01549 2.51494 2.78233 3.09139 3.31213 3.67792 3.75703 3.84253 4.02010 4.10603 4.29163 4.37066 4.41842 4.54179 4.56344 4.63469 4.69884 4.74736 4.79614 4.89938 5.05041 5.13820 5.19717 5.38484 5.41881 5.45335 5.61903 5.69660 5.73286 5.84879 6.39743 6.58202 6.75817 6.77285 6.90520 7.33113 7.85775 8.71156 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.008031 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.176479 B = 3485.700711 C = 4390.860421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.220 3.780 3 C 0.192 3.808 4 N -0.478 5.478 5 C -0.353 4.353 6 H 0.065 0.935 7 C 0.046 3.954 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.279 1.279 11 H -0.315 1.315 12 H -0.242 1.242 13 C 0.447 3.553 14 O -0.567 6.567 15 C -0.129 4.129 16 C -0.061 4.061 17 H 0.054 0.946 18 C -0.105 4.105 19 C -0.115 4.115 20 C -0.102 4.102 21 C -0.110 4.110 22 C 0.105 3.895 23 H 0.052 0.948 24 N -0.846 5.846 25 H 0.160 0.840 26 H 0.147 0.853 27 H 0.271 0.729 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.350 0.650 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 19.988 -3.305 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.099 4.099 3 C 0.066 3.934 4 N -0.202 5.202 5 C -0.480 4.480 6 H 0.083 0.917 7 C -0.159 4.159 8 N -0.549 5.549 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.245 1.245 12 H -0.165 1.165 13 C 0.239 3.761 14 O -0.450 6.450 15 C -0.169 4.169 16 C -0.081 4.081 17 H 0.073 0.927 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.007 4.007 23 H 0.070 0.930 24 N -0.379 5.379 25 H 0.177 0.823 26 H 0.165 0.835 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.164 0.836 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.919 19.324 -1.998 19.521 hybrid contribution 1.351 -0.439 -0.318 1.456 sum -0.568 18.885 -2.316 19.035 Atomic orbital electron populations 1.81122 1.14644 1.10929 1.09289 1.30512 0.96284 0.91275 0.91839 1.19617 0.79102 1.05840 0.88852 1.43743 1.59665 1.07849 1.08893 1.18671 1.10732 0.81647 1.36941 0.91731 1.25976 0.99991 0.96885 0.93038 1.69885 1.30134 1.22969 1.31910 0.85504 0.75682 0.79586 0.79816 1.20588 1.24479 1.16514 1.21488 0.80872 0.90056 0.83671 1.90516 1.47882 1.78861 1.27738 1.21824 1.03996 0.90292 1.00798 1.20884 0.99046 0.94441 0.93692 0.92730 1.21429 0.99124 0.98511 0.95245 1.21466 1.00178 0.96902 0.96709 1.21343 1.00639 0.93706 0.98259 1.21549 0.99166 0.99733 0.94320 1.21221 0.89851 0.92833 0.96763 0.93001 1.58649 1.23504 1.14667 1.41080 0.82314 0.83531 0.91973 0.86118 0.88306 0.92022 0.94748 0.93078 0.93802 0.91031 0.92018 0.90175 0.92168 0.83608 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -17.25 18.54 20.00 0.37 -16.88 16 2 C 0.22 6.82 15.17 89.44 1.36 8.18 16 3 C 0.19 5.14 5.65 84.57 0.48 5.62 16 4 N -0.48 -19.70 2.19 -645.41 -1.41 -21.11 16 5 C -0.35 -18.74 9.71 84.04 0.82 -17.92 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 7 C 0.05 2.60 4.78 84.92 0.41 3.00 16 8 N -0.91 -56.22 13.96 21.66 0.30 -55.91 16 9 Si 0.96 47.15 24.80 68.60 1.70 48.85 16 10 H -0.28 -14.74 6.22 99.48 0.62 -14.12 16 11 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 12 H -0.24 -10.07 7.11 99.48 0.71 -9.37 16 13 C 0.45 18.47 5.59 87.66 0.49 18.96 16 14 O -0.57 -29.17 9.16 -3.08 -0.03 -29.20 16 15 C -0.13 -3.62 3.30 29.85 0.10 -3.52 16 16 C -0.06 -1.76 1.66 -10.80 -0.02 -1.78 16 17 H 0.05 1.83 7.95 -2.39 -0.02 1.81 16 18 C -0.11 -3.53 4.79 30.60 0.15 -3.39 16 19 C -0.11 -3.31 5.92 30.59 0.18 -3.13 16 20 C -0.10 -2.24 5.77 30.59 0.18 -2.06 16 21 C -0.11 -2.09 5.60 30.58 0.17 -1.92 16 22 C 0.10 2.08 3.09 44.90 0.14 2.22 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 N -0.85 -14.66 7.69 -168.76 -1.30 -15.96 16 25 H 0.16 2.52 6.63 -2.38 -0.02 2.50 16 26 H 0.15 3.35 8.00 -2.39 -0.02 3.33 16 27 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 28 H 0.12 2.39 7.41 -2.39 -0.02 2.37 16 29 H 0.10 2.52 6.29 -2.39 -0.02 2.50 16 30 H 0.06 2.04 7.60 -2.39 -0.02 2.02 16 31 H 0.03 1.48 5.95 -2.38 -0.01 1.46 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.61 7.60 -2.39 -0.02 1.59 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.35 4.44 9.04 -89.70 -0.81 3.63 16 39 H 0.34 5.68 7.15 -89.70 -0.64 5.04 16 Total: -1.00 -75.55 306.63 3.61 -71.94 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.47 Total: 14.02 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.44 Total: 4.26 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -2.04 Total: -109.86 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.03 Total: -29.20 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.70 Total: 48.85 kcal Total: -75.55 3.61 -71.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383499139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.157 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds