Wall clock time and date at job start Mon Mar 30 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36025 * 116.99667 * 2 1 4 4 C 1.38511 * 120.87957 * 0.28925 * 3 2 1 5 5 N 1.32583 * 119.12854 * 180.27904 * 4 3 2 6 6 C 1.31724 * 121.05383 * 359.71752 * 5 4 3 7 7 N 1.31821 * 121.93491 * 359.97438 * 6 5 4 8 8 C 1.32863 * 120.74391 * 0.02562 * 7 6 5 9 9 N 1.38778 * 120.55271 * 180.02562 * 8 7 6 10 10 C 1.46893 * 111.00421 * 123.94960 * 9 8 7 11 11 C 1.50702 * 109.47613 * 163.97628 * 10 9 8 12 12 H 1.07998 * 119.99582 * 354.85738 * 11 10 9 13 13 C 1.37878 * 120.00078 * 174.84629 * 11 10 9 14 14 N 1.31507 * 120.00192 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99841 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46683 * 90.00212 * 15 13 11 17 17 H 1.48496 * 109.47183 * 210.00029 * 15 13 11 18 18 H 1.48499 * 109.47016 * 330.00545 * 15 13 11 19 19 C 1.46904 * 111.00095 * 359.97438 * 9 8 7 20 20 C 1.52998 * 109.47075 * 287.50822 * 19 9 8 21 21 C 1.53005 * 109.47073 * 177.49427 * 20 19 9 22 22 C 1.53005 * 109.47121 * 297.49121 * 20 19 9 23 23 H 1.08993 * 109.46997 * 60.00000 * 1 2 3 24 24 H 1.08999 * 109.46655 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47148 * 299.99804 * 1 2 3 26 26 H 1.07997 * 120.43620 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.02943 * 179.97438 * 6 5 4 28 28 H 1.09005 * 109.47369 * 43.97690 * 10 9 8 29 29 H 1.09004 * 109.47097 * 283.98228 * 10 9 8 30 30 H 0.96999 * 120.00222 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47118 * 47.50890 * 19 9 8 32 32 H 1.09000 * 109.47163 * 167.50440 * 19 9 8 33 33 H 1.08999 * 109.47307 * 57.49298 * 20 19 9 34 34 H 1.09010 * 109.46812 * 60.00094 * 21 20 19 35 35 H 1.08998 * 109.47013 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.47167 * 300.00083 * 21 20 19 37 37 H 1.09000 * 109.47472 * 305.06100 * 22 20 19 38 38 H 1.09003 * 109.46869 * 65.05627 * 22 20 19 39 39 H 1.09000 * 109.47352 * 185.05642 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3100 2.3851 0.0060 5 7 1.9477 3.5475 0.0002 6 6 3.2638 3.6005 -0.0056 7 7 4.0056 2.5108 -0.0054 8 6 3.4438 1.3068 0.0002 9 7 4.2285 0.1622 0.0010 10 6 3.8986 -0.7016 1.1423 11 6 4.4615 -2.0799 0.9086 12 1 4.9369 -2.3166 -0.0318 13 6 4.3699 -3.0385 1.8954 14 7 3.7907 -2.7503 3.0404 15 14 5.0683 -4.7467 1.6059 16 1 6.4856 -4.7833 2.0478 17 1 4.2825 -5.7406 2.3804 18 1 4.9922 -5.0739 0.1594 19 6 5.6573 0.5034 -0.0057 20 6 6.0472 1.0394 -1.3847 21 6 7.5202 1.4532 -1.3732 22 6 5.8322 -0.0517 -2.4355 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2305 2.3533 0.0104 27 1 3.7494 4.5651 -0.0107 28 1 2.8156 -0.7649 1.2491 29 1 4.3294 -0.2825 2.0517 30 1 3.7259 -3.4248 3.7344 31 1 5.8524 1.2655 0.7488 32 1 6.2447 -0.3873 0.2173 33 1 5.4289 1.9038 -1.6267 34 1 8.1386 0.5887 -1.1312 35 1 7.7981 1.8347 -2.3557 36 1 7.6734 2.2305 -0.6246 37 1 6.3804 -0.9482 -2.1458 38 1 4.7694 -0.2830 -2.5068 39 1 6.1936 0.2986 -3.4023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383601216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:16 Heat of formation + Delta-G solvation = 17.754247 kcal Electronic energy + Delta-G solvation = -21087.622142 eV Core-core repulsion = 18031.292573 eV Total energy + Delta-G solvation = -3056.329568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94817 -38.03615 -37.53379 -34.29257 -33.01145 -31.98988 -30.07379 -27.60546 -26.98287 -26.63041 -25.39103 -23.38434 -22.83248 -21.17870 -19.62938 -17.64788 -17.58415 -16.83874 -16.26196 -15.55389 -14.87573 -14.62666 -14.46729 -14.16224 -13.76050 -13.53376 -13.38783 -13.17196 -12.40855 -12.20360 -11.87118 -11.78767 -11.56009 -11.34156 -11.25652 -11.00348 -10.88842 -10.66349 -10.60533 -10.44311 -10.14240 -9.99332 -9.79747 -9.39993 -8.75005 -8.74467 -8.41588 -7.29243 -6.10643 -4.12096 1.41640 1.54601 3.27855 3.34415 3.38639 3.51980 4.05665 4.29676 4.44377 4.57459 4.62473 5.09279 5.20422 5.25996 5.35698 5.41721 5.47839 5.50543 5.71235 5.76493 5.87131 6.03216 6.14516 6.29138 6.32692 6.40369 6.49283 6.55726 6.65259 6.88925 6.93664 7.01475 7.16488 7.23336 7.55239 7.71308 7.91389 8.01023 8.32578 8.59027 8.93435 9.51042 11.00090 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.008190 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.438264 B = 3418.021254 C = 4688.246576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.276 6.276 3 C 0.009 3.991 4 C 0.060 3.940 5 N -0.528 5.528 6 C 0.272 3.728 7 N -0.533 5.533 8 C 0.355 3.645 9 N -0.453 5.453 10 C 0.194 3.806 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.074 3.926 20 C -0.092 4.092 21 C -0.140 4.140 22 C -0.136 4.136 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.161 0.839 27 H 0.189 0.811 28 H 0.058 0.942 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 8.148 -6.580 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.186 6.186 3 C -0.045 4.045 4 C -0.102 4.102 5 N -0.246 5.246 6 C -0.017 4.017 7 N -0.256 5.256 8 C 0.111 3.889 9 N -0.168 5.168 10 C 0.072 3.928 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.053 4.053 20 C -0.111 4.111 21 C -0.198 4.198 22 C -0.193 4.193 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.070 0.930 26 H 0.178 0.822 27 H 0.205 0.795 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.684 8.332 -6.810 10.892 hybrid contribution -0.248 -1.231 0.528 1.362 sum -1.932 7.101 -6.282 9.676 Atomic orbital electron populations 1.23076 0.79578 1.04224 1.00461 1.86496 1.20137 1.24010 1.87982 1.20331 0.93003 0.87175 1.03946 1.22960 1.00441 0.86917 0.99836 1.68157 1.11531 1.28155 1.16765 1.24450 0.86331 0.96710 0.94221 1.68516 1.40335 0.97696 1.19011 1.20129 0.88096 0.89901 0.90786 1.58986 1.05169 1.09810 1.42881 1.20125 0.98969 0.90599 0.83118 1.21032 1.37773 0.94824 1.00968 0.91514 1.24940 0.95426 0.99014 0.94915 1.69951 1.43627 1.34604 1.05308 0.86469 0.78872 0.83580 0.78368 1.20650 1.21223 1.19688 1.22082 0.86569 1.00327 0.96283 1.21112 0.95964 0.98591 0.95389 1.21743 0.96296 1.00917 1.00801 1.21719 1.02322 0.98421 0.96881 0.93205 0.87988 0.93002 0.82196 0.79487 0.92464 0.97394 0.92790 0.93338 0.89389 0.90795 0.92971 0.93368 0.92933 0.92898 0.92222 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.84 101.05 0.99 1.29 16 2 O -0.28 -5.27 8.00 -19.82 -0.16 -5.43 16 3 C 0.01 0.18 6.37 -38.80 -0.25 -0.07 16 4 C 0.06 0.96 10.30 -17.13 -0.18 0.79 16 5 N -0.53 -8.67 10.43 -14.56 -0.15 -8.82 16 6 C 0.27 4.35 12.28 -92.19 -1.13 3.22 16 7 N -0.53 -9.76 7.14 -13.67 -0.10 -9.86 16 8 C 0.36 7.22 6.03 -154.50 -0.93 6.28 16 9 N -0.45 -9.92 3.82 -174.21 -0.67 -10.59 16 10 C 0.19 4.95 4.44 -4.98 -0.02 4.92 16 11 C -0.51 -13.75 8.32 -34.44 -0.29 -14.04 16 12 H 0.07 1.80 7.79 -52.49 -0.41 1.39 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.07 1.47 3.87 -3.82 -0.01 1.45 16 20 C -0.09 -1.54 2.80 -90.62 -0.25 -1.79 16 21 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 22 C -0.14 -2.27 8.99 37.16 0.33 -1.94 16 23 H 0.05 0.54 7.72 -51.93 -0.40 0.14 16 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.61 7.70 -51.93 -0.40 0.21 16 26 H 0.16 2.05 6.45 -52.49 -0.34 1.71 16 27 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.06 1.54 5.36 -51.93 -0.28 1.27 16 29 H 0.01 0.23 8.05 -51.93 -0.42 -0.19 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.05 0.97 7.43 -51.93 -0.39 0.59 16 32 H 0.09 1.86 7.15 -51.93 -0.37 1.49 16 33 H 0.07 1.30 6.35 -51.93 -0.33 0.97 16 34 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.10 7.83 -51.93 -0.41 0.70 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -30.14 318.48 -7.88 -38.02 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.83 Total: 0.83 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.49 Total: 0.01 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.18 Total: -54.33 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.16 Total: -5.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.14 -7.88 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383601216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.776 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds