Wall clock time and date at job start Mon Mar 30 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36025 * 116.99667 * 2 1 4 4 C 1.38511 * 120.87957 * 0.28925 * 3 2 1 5 5 N 1.32583 * 119.12854 * 180.27904 * 4 3 2 6 6 C 1.31724 * 121.05383 * 359.71752 * 5 4 3 7 7 N 1.31821 * 121.93491 * 359.97438 * 6 5 4 8 8 C 1.32863 * 120.74391 * 0.02562 * 7 6 5 9 9 N 1.38778 * 120.55271 * 180.02562 * 8 7 6 10 10 C 1.46893 * 111.00421 * 123.94960 * 9 8 7 11 11 C 1.50702 * 109.47613 * 163.97628 * 10 9 8 12 12 H 1.07998 * 119.99582 * 354.85738 * 11 10 9 13 13 C 1.37878 * 120.00078 * 174.84629 * 11 10 9 14 14 N 1.31507 * 120.00192 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99841 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46683 * 90.00212 * 15 13 11 17 17 H 1.48496 * 109.47183 * 210.00029 * 15 13 11 18 18 H 1.48499 * 109.47016 * 330.00545 * 15 13 11 19 19 C 1.46904 * 111.00095 * 359.97438 * 9 8 7 20 20 C 1.52998 * 109.47075 * 287.50822 * 19 9 8 21 21 C 1.53005 * 109.47073 * 177.49427 * 20 19 9 22 22 C 1.53005 * 109.47121 * 297.49121 * 20 19 9 23 23 H 1.08993 * 109.46997 * 60.00000 * 1 2 3 24 24 H 1.08999 * 109.46655 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47148 * 299.99804 * 1 2 3 26 26 H 1.07997 * 120.43620 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.02943 * 179.97438 * 6 5 4 28 28 H 1.09005 * 109.47369 * 43.97690 * 10 9 8 29 29 H 1.09004 * 109.47097 * 283.98228 * 10 9 8 30 30 H 0.96999 * 120.00222 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47118 * 47.50890 * 19 9 8 32 32 H 1.09000 * 109.47163 * 167.50440 * 19 9 8 33 33 H 1.08999 * 109.47307 * 57.49298 * 20 19 9 34 34 H 1.09010 * 109.46812 * 60.00094 * 21 20 19 35 35 H 1.08998 * 109.47013 * 179.97438 * 21 20 19 36 36 H 1.08993 * 109.47167 * 300.00083 * 21 20 19 37 37 H 1.09000 * 109.47472 * 305.06100 * 22 20 19 38 38 H 1.09003 * 109.46869 * 65.05627 * 22 20 19 39 39 H 1.09000 * 109.47352 * 185.05642 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3100 2.3851 0.0060 5 7 1.9477 3.5475 0.0002 6 6 3.2638 3.6005 -0.0056 7 7 4.0056 2.5108 -0.0054 8 6 3.4438 1.3068 0.0002 9 7 4.2285 0.1622 0.0010 10 6 3.8986 -0.7016 1.1423 11 6 4.4615 -2.0799 0.9086 12 1 4.9369 -2.3166 -0.0318 13 6 4.3699 -3.0385 1.8954 14 7 3.7907 -2.7503 3.0404 15 14 5.0683 -4.7467 1.6059 16 1 6.4856 -4.7833 2.0478 17 1 4.2825 -5.7406 2.3804 18 1 4.9922 -5.0739 0.1594 19 6 5.6573 0.5034 -0.0057 20 6 6.0472 1.0394 -1.3847 21 6 7.5202 1.4532 -1.3732 22 6 5.8322 -0.0517 -2.4355 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2305 2.3533 0.0104 27 1 3.7494 4.5651 -0.0107 28 1 2.8156 -0.7649 1.2491 29 1 4.3294 -0.2825 2.0517 30 1 3.7259 -3.4248 3.7344 31 1 5.8524 1.2655 0.7488 32 1 6.2447 -0.3873 0.2173 33 1 5.4289 1.9038 -1.6267 34 1 8.1386 0.5887 -1.1312 35 1 7.7981 1.8347 -2.3557 36 1 7.6734 2.2305 -0.6246 37 1 6.3804 -0.9482 -2.1458 38 1 4.7694 -0.2830 -2.5068 39 1 6.1936 0.2986 -3.4023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383601216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:16 Heat of formation + Delta-G solvation = 0.217805 kcal Electronic energy + Delta-G solvation = -21088.382579 eV Core-core repulsion = 18031.292573 eV Total energy + Delta-G solvation = -3057.090005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.34658 -39.38423 -39.05416 -35.77141 -34.85254 -33.59582 -31.49653 -29.24082 -28.42216 -27.89957 -26.88881 -25.04178 -24.26682 -22.84830 -21.03108 -19.01826 -18.98744 -18.61689 -17.89699 -16.99510 -16.59666 -16.08357 -15.89138 -15.71528 -15.07863 -15.00164 -14.76186 -14.55304 -14.27933 -13.70343 -13.32775 -13.03111 -12.92488 -12.89175 -12.76832 -12.68094 -12.44128 -12.18394 -12.11672 -11.97255 -11.70774 -11.53417 -11.43131 -11.18016 -10.62990 -10.19742 -10.10633 -8.84726 -8.21900 -6.30919 0.06029 0.11400 1.41659 1.42306 1.54109 2.27206 2.37508 2.65492 2.93489 3.12319 3.29067 3.36744 3.74406 3.87816 4.09088 4.18740 4.34815 4.38840 4.40467 4.58048 4.71365 4.74539 4.83130 4.88184 4.89781 5.03279 5.11867 5.13571 5.21350 5.27410 5.37169 5.51702 5.55865 5.65462 5.72577 5.98465 6.11975 6.34621 6.55280 6.80000 7.20174 7.36847 8.89371 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.008190 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.438264 B = 3418.021254 C = 4688.246576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.313 6.313 3 C -0.007 4.007 4 C 0.076 3.924 5 N -0.525 5.525 6 C 0.271 3.729 7 N -0.537 5.537 8 C 0.322 3.678 9 N -0.461 5.461 10 C 0.214 3.786 11 C -0.518 4.518 12 H 0.063 0.937 13 C 0.009 3.991 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.079 3.921 20 C -0.083 4.083 21 C -0.133 4.133 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.197 0.803 27 H 0.227 0.773 28 H 0.041 0.959 29 H -0.031 1.031 30 H 0.265 0.735 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 9.024 -7.860 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.224 6.224 3 C -0.061 4.061 4 C -0.086 4.086 5 N -0.242 5.242 6 C -0.018 4.018 7 N -0.259 5.259 8 C 0.079 3.921 9 N -0.177 5.177 10 C 0.090 3.910 11 C -0.556 4.556 12 H 0.081 0.919 13 C -0.190 4.190 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.047 4.047 20 C -0.102 4.102 21 C -0.191 4.191 22 C -0.187 4.187 23 H 0.095 0.905 24 H 0.127 0.873 25 H 0.084 0.916 26 H 0.214 0.786 27 H 0.243 0.757 28 H 0.059 0.941 29 H -0.013 1.013 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.840 9.243 -8.110 12.433 hybrid contribution -0.319 -1.357 0.938 1.680 sum -2.159 7.886 -7.172 10.876 Atomic orbital electron populations 1.23391 0.76831 1.05482 1.02443 1.86418 1.23130 1.24624 1.88214 1.20513 0.92769 0.88118 1.04656 1.23517 1.01960 0.85761 0.97410 1.68288 1.11729 1.28000 1.16218 1.25252 0.86428 0.97373 0.92764 1.68506 1.41016 0.97646 1.18776 1.20244 0.88959 0.90036 0.92812 1.58917 1.06176 1.10944 1.41686 1.19637 0.97391 0.90737 0.83204 1.21264 1.37691 0.95803 1.00862 0.91897 1.25802 0.95621 1.03017 0.94537 1.70074 1.44806 1.35969 1.06188 0.85411 0.78322 0.78586 0.78496 1.19840 1.20644 1.19009 1.22051 0.85592 0.98968 0.98120 1.21045 0.97758 0.98129 0.93222 1.21697 0.93990 1.01120 1.02310 1.21650 1.00676 0.98189 0.98205 0.90450 0.87325 0.91563 0.78603 0.75666 0.94140 1.01340 0.92614 0.94415 0.91614 0.91256 0.92895 0.91085 0.92532 0.93657 0.94644 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.84 113.37 1.12 1.44 16 2 O -0.31 -12.07 8.00 -93.83 -0.75 -12.82 16 3 C -0.01 -0.27 6.37 22.77 0.14 -0.13 16 4 C 0.08 2.31 10.30 84.64 0.87 3.18 16 5 N -0.53 -15.95 10.43 -199.98 -2.09 -18.03 16 6 C 0.27 8.11 12.28 180.90 2.22 10.33 16 7 N -0.54 -19.47 7.14 -197.18 -1.41 -20.88 16 8 C 0.32 13.33 6.03 133.22 0.80 14.13 16 9 N -0.46 -21.06 3.82 -705.07 -2.69 -23.75 16 10 C 0.21 11.53 4.44 85.56 0.38 11.91 16 11 C -0.52 -29.14 8.32 25.60 0.21 -28.93 16 12 H 0.06 3.51 7.79 -2.91 -0.02 3.48 16 13 C 0.01 0.49 5.46 84.66 0.46 0.96 16 14 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 15 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 C 0.08 3.26 3.87 86.30 0.33 3.60 16 20 C -0.08 -2.75 2.80 -10.79 -0.03 -2.78 16 21 C -0.13 -3.55 9.19 71.98 0.66 -2.89 16 22 C -0.13 -4.29 8.99 71.98 0.65 -3.64 16 23 H 0.08 1.49 7.72 -2.39 -0.02 1.47 16 24 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.07 1.45 7.70 -2.39 -0.02 1.43 16 26 H 0.20 4.35 6.45 -2.91 -0.02 4.33 16 27 H 0.23 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.04 2.31 5.36 -2.38 -0.01 2.30 16 29 H -0.03 -1.87 8.05 -2.38 -0.02 -1.89 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.04 1.58 7.43 -2.39 -0.02 1.57 16 32 H 0.07 2.93 7.15 -2.39 -0.02 2.91 16 33 H 0.07 2.39 6.35 -2.39 -0.02 2.38 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.29 318.48 4.23 -63.06 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.03 Total: 14.21 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 7.82 Total: 7.18 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -5.90 Total: -117.50 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.75 Total: -12.82 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.29 4.23 -63.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383601216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.275 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds