Wall clock time and date at job start Mon Mar 30 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00007 * 2 1 4 4 H 1.48497 * 109.46805 * 269.99555 * 3 2 1 5 5 H 1.48498 * 109.47029 * 29.99848 * 3 2 1 6 6 H 1.48504 * 109.46997 * 149.99542 * 3 2 1 7 7 C 1.37878 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47081 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47292 * 180.02562 * 10 9 7 12 12 N 1.31126 * 126.55059 * 89.99641 * 11 10 9 13 13 C 1.34501 * 105.61357 * 180.02562 * 12 11 10 14 14 C 1.50702 * 126.28504 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47084 * 90.00525 * 14 13 12 16 16 N 1.46905 * 109.47022 * 179.97438 * 15 14 13 17 17 C 1.48560 * 110.99577 * 189.99713 * 16 15 14 18 18 C 1.54378 * 104.69549 * 200.89794 * 17 16 15 19 19 C 1.54571 * 104.91190 * 23.88545 * 18 17 16 20 20 C 1.48555 * 110.99889 * 74.58193 * 16 15 14 21 21 N 1.29947 * 107.42533 * 0.24383 * 13 12 11 22 22 O 1.21305 * 110.24662 * 359.57829 * 21 13 12 23 23 H 0.97006 * 119.99674 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47045 * 59.99703 * 9 7 2 25 25 H 1.09006 * 109.47210 * 299.99997 * 9 7 2 26 26 H 1.09003 * 109.47197 * 60.00074 * 10 9 7 27 27 H 1.08999 * 109.47227 * 299.99805 * 10 9 7 28 28 H 1.08998 * 109.47212 * 330.00211 * 14 13 12 29 29 H 1.09002 * 109.46558 * 209.99830 * 14 13 12 30 30 H 1.08998 * 109.47352 * 59.99772 * 15 14 13 31 31 H 1.08997 * 109.46721 * 299.99847 * 15 14 13 32 32 H 1.09002 * 110.41441 * 319.73871 * 17 16 15 33 33 H 1.09002 * 110.41248 * 82.06172 * 17 16 15 34 34 H 1.09006 * 110.32557 * 142.80924 * 18 17 16 35 35 H 1.08996 * 110.32821 * 265.02105 * 18 17 16 36 36 H 1.08995 * 110.29758 * 241.08109 * 19 18 17 37 37 H 1.09004 * 110.32005 * 118.89089 * 19 18 17 38 38 H 1.09005 * 110.41154 * 277.81401 * 20 16 15 39 39 H 1.08998 * 110.41848 * 40.13562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9672 -0.0001 12 7 1.1016 -5.6431 -1.0538 13 6 0.4729 -6.7309 -0.5737 14 6 -0.1611 -7.8276 -1.3901 15 6 0.8732 -8.9206 -1.6664 16 7 0.2551 -9.9900 -2.4617 17 6 1.1485 -11.1738 -2.5476 18 6 0.6554 -11.9473 -3.7893 19 6 -0.0525 -10.8869 -4.6632 20 6 0.0739 -9.5662 -3.8740 21 7 0.5074 -6.6596 0.7233 22 8 1.0930 -5.6565 1.0731 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8718 -3.6043 -0.8895 28 1 -0.5175 -7.4174 -2.3350 29 1 -1.0000 -8.2523 -0.8387 30 1 1.2297 -9.3308 -0.7215 31 1 1.7122 -8.4959 -2.2176 32 1 2.1837 -10.8600 -2.6815 33 1 1.0513 -11.7891 -1.6531 34 1 1.4998 -12.3800 -4.3258 35 1 -0.0472 -12.7270 -3.4954 36 1 -1.1020 -11.1480 -4.7987 37 1 0.4445 -10.7996 -5.6294 38 1 -0.8340 -8.9721 -3.9792 39 1 0.9400 -8.9989 -4.2148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395857637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:49 Heat of formation + Delta-G solvation = 31.375508 kcal Electronic energy + Delta-G solvation = -19236.221900 eV Core-core repulsion = 16180.482994 eV Total energy + Delta-G solvation = -3055.738906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.58635 -39.92768 -37.30663 -36.44000 -34.84300 -33.81826 -31.98752 -30.26344 -29.66008 -27.74768 -25.42109 -24.60704 -23.44042 -22.03551 -21.92417 -21.38454 -19.13517 -18.66266 -18.20505 -17.09611 -16.91240 -16.50361 -16.01229 -15.59108 -15.40977 -14.93622 -14.60429 -14.32741 -14.18853 -13.72890 -13.43952 -13.39649 -13.05308 -12.90594 -12.81198 -12.64803 -12.36843 -12.26642 -12.16944 -12.06071 -11.97089 -11.82687 -11.75614 -11.36293 -11.34553 -10.78742 -10.56976 -9.59567 -8.20643 -6.32769 0.10481 1.16843 1.46193 1.47052 1.58202 1.85531 2.42914 2.51398 2.95574 3.14871 3.19374 3.67162 3.69796 3.90045 4.02863 4.08455 4.21536 4.32513 4.35619 4.42986 4.52376 4.58884 4.62038 4.72377 4.76251 4.84405 4.88539 4.93253 4.97422 4.99494 5.07879 5.20769 5.27480 5.43020 5.52711 5.77345 5.82992 5.88826 6.12771 6.83106 7.12229 7.37531 8.91899 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.002962 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.857718 B = 9451.628344 C = 9757.854457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.034 3.966 10 C -0.014 4.014 11 C 0.209 3.791 12 N -0.511 5.511 13 C 0.170 3.830 14 C -0.014 4.014 15 C 0.064 3.936 16 N -0.519 5.519 17 C 0.027 3.973 18 C -0.120 4.120 19 C -0.122 4.122 20 C 0.022 3.978 21 N -0.407 5.407 22 O 0.060 5.940 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.003 1.003 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 -21.353 -6.854 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.097 0.903 9 C -0.005 4.005 10 C -0.053 4.053 11 C -0.011 4.011 12 N -0.245 5.245 13 C -0.104 4.104 14 C -0.053 4.053 15 C -0.066 4.066 16 N -0.243 5.243 17 C -0.100 4.100 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.106 4.106 21 N -0.120 5.120 22 O 0.006 5.994 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.208 -22.056 -6.478 23.094 hybrid contribution 0.745 1.536 -0.130 1.712 sum 2.953 -20.520 -6.608 21.760 Atomic orbital electron populations 1.70122 1.08109 1.27956 1.51404 1.26018 0.95681 1.03654 0.94557 0.85364 0.78779 0.77992 0.78424 1.19931 1.21324 1.17954 1.21570 0.94187 0.90945 1.50879 0.90295 1.18949 0.93995 0.91944 0.95596 1.20525 0.96733 0.81655 1.06356 1.29564 0.94362 0.97148 0.79983 1.71944 1.17140 1.05960 1.29456 1.26282 0.98792 0.96776 0.88510 1.19894 0.97901 0.89033 0.98491 1.21984 0.94468 0.91365 0.98754 1.65330 1.42973 1.05262 1.10724 1.23199 0.94658 0.92056 1.00132 1.22350 1.00790 0.97870 0.94829 1.22357 1.01913 0.93303 0.98446 1.23285 1.01409 0.98192 0.87692 1.74553 1.16689 1.04479 1.16254 1.85258 1.52366 1.25462 1.36297 0.92756 0.98842 0.98438 0.86569 0.86782 0.88335 0.87758 0.90726 0.94416 0.93832 0.89653 0.90007 0.90398 0.90527 0.90219 0.89946 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.54 -28.55 9.11 25.60 0.23 -28.31 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.80 16 9 C 0.03 1.68 4.95 29.85 0.15 1.83 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.35 16 11 C 0.21 7.97 7.77 88.38 0.69 8.66 16 12 N -0.51 -19.45 11.55 -303.20 -3.50 -22.95 16 13 C 0.17 5.80 7.47 138.46 1.03 6.83 16 14 C -0.01 -0.36 5.96 29.85 0.18 -0.18 16 15 C 0.06 1.44 4.81 86.30 0.42 1.86 16 16 N -0.52 -10.10 5.34 -881.50 -4.71 -14.81 16 17 C 0.03 0.43 6.45 86.45 0.56 0.98 16 18 C -0.12 -1.46 7.02 31.60 0.22 -1.23 16 19 C -0.12 -1.58 7.01 31.60 0.22 -1.36 16 20 C 0.02 0.38 5.91 86.45 0.51 0.89 16 21 N -0.41 -14.92 12.16 -60.31 -0.73 -15.65 16 22 O 0.06 2.27 11.31 74.85 0.85 3.11 16 23 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 24 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 25 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 26 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 27 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 28 H 0.10 2.43 7.47 -2.39 -0.02 2.41 16 29 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 31 H 0.04 0.90 7.77 -2.39 -0.02 0.88 16 32 H 0.04 0.69 8.00 -2.39 -0.02 0.67 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.08 1.43 7.85 -2.38 -0.02 1.41 16 39 H 0.04 0.78 7.75 -2.39 -0.02 0.76 16 Total: -1.00 -64.12 326.58 0.08 -64.04 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.02 Total: 7.53 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.84 Total: -9.99 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -8.66 Total: -109.17 kcal Atomic # 8 Polarization: 2.27 SS G_CDS: 0.85 Total: 3.11 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.12 0.08 -64.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395857637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.412 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds