Wall clock time and date at job start Mon Mar 30 2020 04:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47175 * 244.06265 * 3 2 1 5 5 N 1.46496 * 109.47187 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00384 * 270.00084 * 5 4 3 7 7 C 1.50700 * 109.46632 * 270.00229 * 6 5 4 8 8 H 1.07994 * 120.00707 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99284 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00347 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99479 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46873 * 90.00036 * 11 9 7 13 13 H 1.48500 * 109.47195 * 209.99687 * 11 9 7 14 14 H 1.48492 * 109.47471 * 329.99938 * 11 9 7 15 15 C 1.34775 * 119.99992 * 89.99964 * 5 4 3 16 16 O 1.21287 * 120.00275 * 180.02562 * 15 5 4 17 17 C 1.50705 * 120.00113 * 359.97438 * 15 5 4 18 18 H 1.08997 * 109.47054 * 320.00588 * 17 15 5 19 19 N 1.46896 * 109.47310 * 199.99693 * 17 15 5 20 20 C 1.52997 * 109.47019 * 79.99931 * 17 15 5 21 21 C 1.53781 * 113.61525 * 87.51323 * 20 17 15 22 22 C 1.54048 * 86.98544 * 140.02210 * 21 20 17 23 23 C 1.53774 * 87.07841 * 334.56952 * 22 21 20 24 24 H 1.09003 * 109.46974 * 124.06150 * 3 2 1 25 25 H 1.09004 * 109.46932 * 4.06397 * 3 2 1 26 26 H 1.09003 * 109.47263 * 60.00062 * 4 3 2 27 27 H 1.09004 * 109.47299 * 299.99908 * 4 3 2 28 28 H 1.09002 * 109.46748 * 29.99374 * 6 5 4 29 29 H 1.09000 * 109.47300 * 150.00137 * 6 5 4 30 30 H 0.97001 * 120.00054 * 180.02562 * 10 9 7 31 31 H 1.00903 * 111.00236 * 185.75538 * 19 17 15 32 32 H 1.00901 * 111.00081 * 309.71519 * 19 17 15 33 33 H 1.09008 * 112.85045 * 316.31594 * 20 17 15 34 34 H 1.09007 * 113.61445 * 254.61197 * 21 20 17 35 35 H 1.08997 * 113.61685 * 25.51151 * 21 20 17 36 36 H 1.09004 * 113.61638 * 220.02055 * 22 21 20 37 37 H 1.08998 * 113.69315 * 89.13310 * 22 21 20 38 38 H 1.09005 * 113.61473 * 270.88288 * 23 22 21 39 39 H 1.08997 * 113.62093 * 139.98207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6318 1.2972 5 7 4.5827 0.6319 1.2974 6 6 5.3153 -0.5089 1.8526 7 6 5.5661 -0.2783 3.3206 8 1 5.2153 0.6274 3.7927 9 6 6.2434 -1.2240 4.0610 10 7 6.6701 -2.3272 3.4863 11 14 6.5550 -0.9379 5.8805 12 1 5.4246 -1.4909 6.6692 13 1 7.8149 -1.6151 6.2795 14 1 6.6729 0.5195 6.1395 15 6 5.2566 1.6815 0.7869 16 8 6.4695 1.6814 0.7867 17 6 4.5031 2.8548 0.2152 18 1 3.6400 2.4945 -0.3445 19 7 5.3857 3.6140 -0.6806 20 6 4.0304 3.7610 1.3537 21 6 5.0662 4.8187 1.7698 22 6 3.8878 5.8014 1.9062 23 6 3.1419 4.9256 0.8857 24 1 2.9711 0.5764 -0.8514 25 1 2.9718 -1.0243 -0.0728 26 1 2.7547 0.0560 2.1485 27 1 2.7540 1.6568 1.3700 28 1 4.7262 -1.4168 1.7229 29 1 6.2678 -0.6164 1.3338 30 1 7.1463 -2.9926 4.0073 31 1 4.9347 4.4570 -1.0035 32 1 6.2642 3.8234 -0.2307 33 1 3.6138 3.2039 2.1929 34 1 5.5624 4.5959 2.7145 35 1 5.7647 5.0819 0.9755 36 1 4.1107 6.8039 1.5409 37 1 3.4315 5.8034 2.8960 38 1 3.3151 5.2181 -0.1500 39 1 2.0855 4.7892 1.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399020772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:49 Heat of formation + Delta-G solvation = 11.476520 kcal Electronic energy + Delta-G solvation = -20664.110792 eV Core-core repulsion = 17607.509001 eV Total energy + Delta-G solvation = -3056.601791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23004 -38.27287 -36.83341 -35.26376 -33.41929 -32.74902 -30.82026 -28.29988 -26.60140 -25.71072 -24.23895 -23.71241 -21.98952 -19.19021 -18.56833 -17.51257 -16.99454 -16.48070 -16.02085 -15.73957 -15.23944 -14.78689 -14.51733 -14.29761 -13.89181 -13.48998 -13.26810 -12.85193 -12.66764 -12.47729 -12.35807 -12.34383 -12.08910 -11.71805 -11.54672 -11.26733 -10.98676 -10.90643 -10.73231 -10.61991 -10.47281 -10.32078 -10.19166 -9.70861 -8.98771 -8.54719 -8.47975 -7.82752 -6.09269 -4.13858 2.74447 2.82994 3.26794 3.29548 3.34587 3.38483 3.62945 4.15559 4.39390 4.51567 4.52740 4.65902 4.75621 4.81622 5.01646 5.13798 5.19707 5.26703 5.28364 5.45589 5.53541 5.57437 5.65181 5.72026 5.77965 5.84060 6.00216 6.08287 6.15266 6.37089 6.90591 7.16010 7.38194 7.43296 7.53802 7.59068 7.86899 8.17213 8.28323 8.84277 9.00475 9.51560 10.98846 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.007078 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.239998 B = 3954.971818 C = 5027.249852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.218 3.782 3 C -0.052 4.052 4 C 0.114 3.886 5 N -0.596 5.596 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.517 3.483 16 O -0.526 6.526 17 C 0.079 3.921 18 H 0.098 0.902 19 N -0.827 5.827 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.136 4.136 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.339 0.661 32 H 0.353 0.647 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 11.942 -5.998 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.100 4.100 3 C -0.094 4.094 4 C -0.012 4.012 5 N -0.328 5.328 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.303 3.697 16 O -0.401 6.401 17 C -0.037 4.037 18 H 0.116 0.884 19 N -0.360 5.360 20 C -0.162 4.162 21 C -0.179 4.179 22 C -0.178 4.178 23 C -0.174 4.174 24 H 0.126 0.874 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.754 11.098 -6.433 14.989 hybrid contribution 0.471 0.700 1.838 2.022 sum -7.283 11.798 -4.595 14.606 Atomic orbital electron populations 1.81201 1.13031 1.09311 1.08835 1.29116 0.95105 0.92812 0.92978 1.19934 0.81321 1.06105 1.02021 1.21372 0.82433 1.01453 0.95945 1.48153 1.04694 1.20656 1.59278 1.19343 0.92642 0.81772 0.93627 1.21406 1.36711 1.04576 0.93961 0.92465 1.24912 0.95334 0.95055 0.98661 1.69914 1.38292 1.08669 1.36295 0.86538 0.77733 0.78356 0.85037 1.20662 1.21081 1.19956 1.20122 0.88010 0.83318 0.78277 1.90666 1.13809 1.79381 1.56247 1.21404 0.96003 0.93480 0.92792 0.88434 1.58768 1.07661 1.27212 1.42397 1.23349 0.98112 0.95373 0.99386 1.23065 0.96455 0.95920 1.02440 1.22822 0.97473 0.97792 0.99668 1.22969 0.99025 0.96199 0.99201 0.87382 0.86441 0.88807 0.90534 0.94742 0.93557 0.92664 0.84726 0.82973 0.88155 0.90955 0.89960 0.91596 0.90183 0.90092 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.59 18.54 42.15 0.78 -5.81 16 2 C 0.22 2.67 15.43 -20.76 -0.32 2.35 16 3 C -0.05 -0.57 5.89 -29.52 -0.17 -0.74 16 4 C 0.11 1.55 4.93 -4.05 -0.02 1.53 16 5 N -0.60 -10.92 2.46 -175.06 -0.43 -11.35 16 6 C 0.24 5.82 5.16 -5.19 -0.03 5.79 16 7 C -0.53 -14.03 9.39 -34.44 -0.32 -14.36 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 11 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 15 C 0.52 9.57 6.91 -10.98 -0.08 9.49 16 16 O -0.53 -12.21 15.60 5.55 0.09 -12.13 16 17 C 0.08 1.04 2.44 -68.87 -0.17 0.87 16 18 H 0.10 1.11 6.12 -51.93 -0.32 0.79 16 19 N -0.83 -10.37 8.46 -5.66 -0.05 -10.42 16 20 C -0.14 -1.68 2.90 -89.81 -0.26 -1.94 16 21 C -0.14 -1.65 7.32 -25.78 -0.19 -1.84 16 22 C -0.14 -1.32 8.09 -25.78 -0.21 -1.53 16 23 C -0.14 -1.25 7.46 -25.92 -0.19 -1.44 16 24 H 0.11 1.00 7.15 -51.93 -0.37 0.63 16 25 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.08 0.88 5.09 -51.93 -0.26 0.62 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.34 3.26 7.32 -39.29 -0.29 2.97 16 32 H 0.35 4.90 6.61 -39.29 -0.26 4.64 16 33 H 0.10 1.30 7.01 -51.92 -0.36 0.94 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.08 0.91 5.89 -51.93 -0.31 0.60 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.65 6.81 -51.93 -0.35 0.29 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -31.99 322.99 -6.49 -38.48 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.41 Total: 5.15 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.06 Total: -0.19 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 1.04 Total: -52.36 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.99 -6.49 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399020772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.960 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds