Wall clock time and date at job start Mon Mar 30 2020 04:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47175 * 244.06265 * 3 2 1 5 5 N 1.46496 * 109.47187 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00384 * 270.00084 * 5 4 3 7 7 C 1.50700 * 109.46632 * 270.00229 * 6 5 4 8 8 H 1.07994 * 120.00707 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99284 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00347 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99479 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46873 * 90.00036 * 11 9 7 13 13 H 1.48500 * 109.47195 * 209.99687 * 11 9 7 14 14 H 1.48492 * 109.47471 * 329.99938 * 11 9 7 15 15 C 1.34775 * 119.99992 * 89.99964 * 5 4 3 16 16 O 1.21287 * 120.00275 * 180.02562 * 15 5 4 17 17 C 1.50705 * 120.00113 * 359.97438 * 15 5 4 18 18 H 1.08997 * 109.47054 * 320.00588 * 17 15 5 19 19 N 1.46896 * 109.47310 * 199.99693 * 17 15 5 20 20 C 1.52997 * 109.47019 * 79.99931 * 17 15 5 21 21 C 1.53781 * 113.61525 * 87.51323 * 20 17 15 22 22 C 1.54048 * 86.98544 * 140.02210 * 21 20 17 23 23 C 1.53774 * 87.07841 * 334.56952 * 22 21 20 24 24 H 1.09003 * 109.46974 * 124.06150 * 3 2 1 25 25 H 1.09004 * 109.46932 * 4.06397 * 3 2 1 26 26 H 1.09003 * 109.47263 * 60.00062 * 4 3 2 27 27 H 1.09004 * 109.47299 * 299.99908 * 4 3 2 28 28 H 1.09002 * 109.46748 * 29.99374 * 6 5 4 29 29 H 1.09000 * 109.47300 * 150.00137 * 6 5 4 30 30 H 0.97001 * 120.00054 * 180.02562 * 10 9 7 31 31 H 1.00903 * 111.00236 * 185.75538 * 19 17 15 32 32 H 1.00901 * 111.00081 * 309.71519 * 19 17 15 33 33 H 1.09008 * 112.85045 * 316.31594 * 20 17 15 34 34 H 1.09007 * 113.61445 * 254.61197 * 21 20 17 35 35 H 1.08997 * 113.61685 * 25.51151 * 21 20 17 36 36 H 1.09004 * 113.61638 * 220.02055 * 22 21 20 37 37 H 1.08998 * 113.69315 * 89.13310 * 22 21 20 38 38 H 1.09005 * 113.61473 * 270.88288 * 23 22 21 39 39 H 1.08997 * 113.62093 * 139.98207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6318 1.2972 5 7 4.5827 0.6319 1.2974 6 6 5.3153 -0.5089 1.8526 7 6 5.5661 -0.2783 3.3206 8 1 5.2153 0.6274 3.7927 9 6 6.2434 -1.2240 4.0610 10 7 6.6701 -2.3272 3.4863 11 14 6.5550 -0.9379 5.8805 12 1 5.4246 -1.4909 6.6692 13 1 7.8149 -1.6151 6.2795 14 1 6.6729 0.5195 6.1395 15 6 5.2566 1.6815 0.7869 16 8 6.4695 1.6814 0.7867 17 6 4.5031 2.8548 0.2152 18 1 3.6400 2.4945 -0.3445 19 7 5.3857 3.6140 -0.6806 20 6 4.0304 3.7610 1.3537 21 6 5.0662 4.8187 1.7698 22 6 3.8878 5.8014 1.9062 23 6 3.1419 4.9256 0.8857 24 1 2.9711 0.5764 -0.8514 25 1 2.9718 -1.0243 -0.0728 26 1 2.7547 0.0560 2.1485 27 1 2.7540 1.6568 1.3700 28 1 4.7262 -1.4168 1.7229 29 1 6.2678 -0.6164 1.3338 30 1 7.1463 -2.9926 4.0073 31 1 4.9347 4.4570 -1.0035 32 1 6.2642 3.8234 -0.2307 33 1 3.6138 3.2039 2.1929 34 1 5.5624 4.5959 2.7145 35 1 5.7647 5.0819 0.9755 36 1 4.1107 6.8039 1.5409 37 1 3.4315 5.8034 2.8960 38 1 3.3151 5.2181 -0.1500 39 1 2.0855 4.7892 1.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399020772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:48 Heat of formation + Delta-G solvation = -10.183329 kcal Electronic energy + Delta-G solvation = -20665.050033 eV Core-core repulsion = 17607.509001 eV Total energy + Delta-G solvation = -3057.541032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42145 -39.43945 -37.98869 -36.70205 -34.94392 -34.25459 -32.15490 -29.81950 -28.00373 -26.53996 -25.40287 -25.27825 -23.36624 -20.15376 -19.85823 -18.72239 -18.33354 -18.25682 -17.29195 -16.81882 -16.48390 -16.13266 -15.73528 -15.67547 -15.24059 -14.65022 -14.54562 -14.24930 -13.84732 -13.66756 -13.59154 -13.41334 -13.17117 -13.15922 -12.94211 -12.73635 -12.59646 -12.47080 -12.19065 -11.89121 -11.69816 -11.60523 -11.37703 -11.16206 -10.59193 -10.40265 -9.60179 -9.44987 -8.18428 -6.30749 1.37882 1.40243 1.49391 1.68061 1.83990 1.90883 2.27077 2.43692 3.08402 3.13942 3.55423 3.64264 3.75744 3.82075 3.91818 4.00060 4.09849 4.11336 4.30681 4.51219 4.59765 4.78859 4.80289 4.82509 4.90361 5.04342 5.07089 5.11056 5.13228 5.30125 5.34330 5.55201 5.60899 5.87878 6.11316 6.13162 6.60103 6.62637 6.75694 6.82372 7.34175 7.53769 8.88324 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.007078 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.239998 B = 3954.971818 C = 5027.249852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.246 3.754 3 C -0.040 4.040 4 C 0.111 3.889 5 N -0.596 5.596 6 C 0.260 3.740 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.957 3.043 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.508 3.492 16 O -0.583 6.583 17 C 0.094 3.906 18 H 0.127 0.873 19 N -0.830 5.830 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.132 4.132 23 C -0.118 4.118 24 H 0.135 0.865 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.034 0.966 29 H 0.002 0.998 30 H 0.265 0.735 31 H 0.358 0.642 32 H 0.345 0.655 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 13.652 -6.432 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.071 4.071 3 C -0.081 4.081 4 C -0.014 4.014 5 N -0.327 5.327 6 C 0.139 3.861 7 C -0.577 4.577 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.200 1.200 15 C 0.297 3.703 16 O -0.462 6.462 17 C -0.022 4.022 18 H 0.144 0.856 19 N -0.365 5.365 20 C -0.169 4.169 21 C -0.190 4.190 22 C -0.169 4.169 23 C -0.156 4.156 24 H 0.152 0.848 25 H 0.139 0.861 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.052 0.948 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.175 0.825 32 H 0.161 0.839 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.576 12.833 -6.880 17.428 hybrid contribution 1.065 0.168 1.964 2.241 sum -8.511 13.001 -4.916 16.299 Atomic orbital electron populations 1.81245 1.14206 1.10719 1.10140 1.29071 0.94844 0.91520 0.91710 1.19840 0.80330 1.06581 1.01326 1.21575 0.79303 1.03336 0.97174 1.48026 1.06595 1.19316 1.58747 1.18797 0.91426 0.83863 0.92056 1.21723 1.36386 1.04160 0.95430 0.92962 1.25721 0.95240 0.94922 1.02906 1.70021 1.39145 1.09503 1.37863 0.85576 0.77924 0.78072 0.80211 1.19174 1.20937 1.19978 1.21147 0.87700 0.84180 0.77284 1.90635 1.16539 1.80529 1.58490 1.21345 0.95819 0.91489 0.93511 0.85589 1.58758 1.07393 1.28343 1.41989 1.23385 0.99141 0.95748 0.98635 1.23152 0.97287 0.97313 1.01284 1.22792 0.95906 0.98209 1.00033 1.22932 0.99031 0.93592 1.00020 0.84769 0.86127 0.89699 0.87847 0.94793 0.97982 0.92559 0.82508 0.83907 0.89453 0.93838 0.89374 0.89899 0.90291 0.88196 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.38 18.54 20.01 0.37 -13.01 16 2 C 0.25 5.42 15.43 89.44 1.38 6.80 16 3 C -0.04 -0.76 5.89 28.79 0.17 -0.59 16 4 C 0.11 2.81 4.93 86.38 0.43 3.24 16 5 N -0.60 -21.84 2.46 -826.14 -2.03 -23.87 16 6 C 0.26 12.74 5.16 85.63 0.44 13.19 16 7 C -0.54 -29.28 9.39 25.60 0.24 -29.04 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.63 5.46 84.66 0.46 1.09 16 10 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 11 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.51 18.81 6.91 87.66 0.61 19.42 16 16 O -0.58 -28.02 15.60 -3.05 -0.05 -28.06 16 17 C 0.09 2.28 2.44 44.17 0.11 2.38 16 18 H 0.13 2.35 6.12 -2.39 -0.01 2.33 16 19 N -0.83 -19.16 8.46 -171.81 -1.45 -20.61 16 20 C -0.15 -3.20 2.90 -10.27 -0.03 -3.23 16 21 C -0.15 -3.41 7.32 31.21 0.23 -3.18 16 22 C -0.13 -2.12 8.09 31.21 0.25 -1.87 16 23 C -0.12 -1.69 7.46 31.12 0.23 -1.46 16 24 H 0.13 1.98 7.15 -2.39 -0.02 1.96 16 25 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 26 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 27 H 0.10 2.09 5.09 -2.38 -0.01 2.08 16 28 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.36 5.71 7.32 -89.69 -0.66 5.06 16 32 H 0.35 9.33 6.61 -89.69 -0.59 8.74 16 33 H 0.09 2.13 7.01 -2.38 -0.02 2.11 16 34 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.09 1.85 5.89 -2.39 -0.01 1.83 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.09 6.81 -2.38 -0.02 1.08 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -72.16 322.99 3.50 -68.65 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.17 Total: 18.05 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.52 Total: 6.74 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -2.83 Total: -111.25 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.06 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.16 3.50 -68.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399020772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.471 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds