Wall clock time and date at job start Mon Mar 30 2020 04:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46925 * 196.23330 * 3 2 1 5 5 N 1.46498 * 109.47215 * 184.65735 * 4 3 2 6 6 C 1.46500 * 119.99794 * 273.11985 * 5 4 3 7 7 C 1.50696 * 109.47320 * 270.00206 * 6 5 4 8 8 H 1.07993 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00003 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99986 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99929 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47006 * 89.99851 * 11 9 7 13 13 H 1.48498 * 109.46820 * 210.00009 * 11 9 7 14 14 H 1.48493 * 109.46827 * 329.99594 * 11 9 7 15 15 C 1.34772 * 120.00542 * 93.12205 * 5 4 3 16 16 O 1.21283 * 119.99503 * 355.05366 * 15 5 4 17 17 C 1.50700 * 120.00476 * 175.05431 * 15 5 4 18 18 H 1.09002 * 109.46550 * 32.48730 * 17 15 5 19 19 N 1.46904 * 109.47165 * 152.48028 * 17 15 5 20 20 C 1.52993 * 109.47270 * 272.48526 * 17 15 5 21 21 C 1.53778 * 113.61466 * 178.38410 * 20 17 15 22 22 C 1.53778 * 87.08414 * 139.98006 * 21 20 17 23 23 C 1.53786 * 87.17262 * 334.52323 * 22 21 20 24 24 H 1.09006 * 109.46705 * 76.23688 * 3 2 1 25 25 H 1.08988 * 109.47435 * 316.23534 * 3 2 1 26 26 H 1.09002 * 109.47066 * 64.65513 * 4 3 2 27 27 H 1.09006 * 109.47016 * 304.65666 * 4 3 2 28 28 H 1.08997 * 109.47068 * 30.00304 * 6 5 4 29 29 H 1.08998 * 109.47027 * 149.99828 * 6 5 4 30 30 H 0.96998 * 119.99764 * 180.02562 * 10 9 7 31 31 H 1.00893 * 110.99995 * 293.07680 * 19 17 15 32 32 H 1.00897 * 110.99535 * 57.02751 * 19 17 15 33 33 H 1.08996 * 112.90703 * 47.12544 * 20 17 15 34 34 H 1.09005 * 113.61655 * 25.42885 * 21 20 17 35 35 H 1.09004 * 113.61325 * 254.52318 * 21 20 17 36 36 H 1.09004 * 113.62008 * 89.11143 * 22 21 20 37 37 H 1.09007 * 113.61722 * 219.93670 * 22 21 20 38 38 H 1.08996 * 113.61352 * 140.01811 * 23 22 21 39 39 H 1.09000 * 113.61530 * 270.92622 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3859 0.4032 5 7 4.5780 1.4194 0.2960 6 6 5.4054 0.9846 1.4241 7 6 5.6958 2.1628 2.3176 8 1 5.3037 3.1380 2.0699 9 6 6.4622 1.9956 3.4516 10 7 6.7161 3.0240 4.2312 11 14 7.1411 0.3088 3.8798 12 1 8.4766 0.1390 3.2531 13 1 7.2669 0.1857 5.3543 14 1 6.2193 -0.7391 3.3725 15 6 5.1607 1.8503 -0.8403 16 8 4.4787 2.1251 -1.8049 17 6 6.6594 1.9907 -0.9124 18 1 7.1260 1.2298 -0.2867 19 7 7.1009 1.8194 -2.3030 20 6 7.0661 3.3793 -0.4155 21 6 8.5862 3.6115 -0.4117 22 6 8.2914 5.0325 -0.9202 23 6 6.9815 4.4716 -1.4987 24 1 2.9714 -0.2437 -0.9982 25 1 2.9717 -0.7412 0.7107 26 1 2.8236 1.5958 1.4317 27 1 2.6871 2.1379 -0.2582 28 1 4.8738 0.2206 1.9914 29 1 6.3426 0.5727 1.0497 30 1 7.2555 2.9064 5.0287 31 1 6.9455 0.8735 -2.6178 32 1 6.6447 2.4824 -2.9114 33 1 6.5800 3.6542 0.5205 34 1 9.1242 2.9933 -1.1305 35 1 9.0291 3.5872 0.5840 36 1 8.1403 5.7593 -0.1221 37 1 8.9917 5.3783 -1.6806 38 1 6.1297 5.1412 -1.3798 39 1 7.0815 4.0882 -2.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399020773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:50 Heat of formation + Delta-G solvation = -5.619224 kcal Electronic energy + Delta-G solvation = -20845.337591 eV Core-core repulsion = 17787.994473 eV Total energy + Delta-G solvation = -3057.343118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36406 -39.32602 -37.94191 -36.85399 -34.75074 -34.34930 -32.62070 -29.58710 -28.39778 -26.36278 -25.70858 -24.49999 -23.25020 -20.15330 -19.71171 -18.94386 -18.52612 -18.13069 -17.56653 -17.02656 -16.33196 -15.99589 -15.80656 -15.45796 -15.15943 -14.95076 -14.59293 -14.21205 -13.94740 -13.68243 -13.66867 -13.36187 -13.07940 -12.97604 -12.77300 -12.68952 -12.48719 -12.33218 -12.00428 -11.83683 -11.61410 -11.36505 -11.18601 -10.97494 -10.86966 -10.63738 -9.57819 -9.48183 -8.18052 -6.23445 1.48537 1.50154 1.56963 1.59083 1.72074 1.75744 2.27386 2.43781 3.14282 3.17753 3.61320 3.70453 3.88635 3.98488 4.03488 4.09745 4.12499 4.22018 4.49057 4.51900 4.68181 4.81267 4.85095 4.94165 4.96463 5.04085 5.07898 5.11780 5.14724 5.27360 5.52692 5.54612 5.66782 5.82487 6.14319 6.27070 6.52370 6.57145 6.63254 6.82267 7.26634 7.42025 8.97420 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.009032 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.202559 B = 3099.220774 C = 4788.141664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.243 3.757 3 C -0.028 4.028 4 C 0.119 3.881 5 N -0.588 5.588 6 C 0.209 3.791 7 C -0.526 4.526 8 H 0.035 0.965 9 C 0.023 3.977 10 N -0.942 5.942 11 Si 0.928 3.072 12 H -0.265 1.265 13 H -0.297 1.297 14 H -0.229 1.229 15 C 0.488 3.512 16 O -0.586 6.586 17 C 0.096 3.904 18 H 0.106 0.894 19 N -0.811 5.811 20 C -0.101 4.101 21 C -0.117 4.117 22 C -0.133 4.133 23 C -0.131 4.131 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.348 0.652 32 H 0.347 0.653 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -5.965 -9.463 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.074 4.074 3 C -0.069 4.069 4 C -0.006 4.006 5 N -0.317 5.317 6 C 0.088 3.912 7 C -0.565 4.565 8 H 0.053 0.947 9 C -0.176 4.176 10 N -0.582 5.582 11 Si 0.751 3.249 12 H -0.190 1.190 13 H -0.224 1.224 14 H -0.151 1.151 15 C 0.275 3.725 16 O -0.467 6.467 17 C -0.020 4.020 18 H 0.124 0.876 19 N -0.342 5.342 20 C -0.120 4.120 21 C -0.154 4.154 22 C -0.170 4.170 23 C -0.169 4.169 24 H 0.140 0.860 25 H 0.157 0.843 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.104 -5.599 -9.536 11.257 hybrid contribution -0.469 -0.261 0.862 1.016 sum 1.635 -5.860 -8.674 10.595 Atomic orbital electron populations 1.81219 1.14458 1.10177 1.11076 1.29309 0.95223 0.91642 0.91266 1.19724 0.79915 1.00278 1.07005 1.21205 0.80742 0.95870 1.02801 1.47972 1.06068 1.63016 1.14643 1.19838 0.91794 0.95144 0.84463 1.21423 1.32179 0.95372 1.07489 0.94665 1.25672 0.96025 1.00161 0.95759 1.70055 1.39917 1.32847 1.15392 0.86010 0.80437 0.81059 0.77347 1.19035 1.22372 1.15117 1.22280 0.93043 0.75219 0.81944 1.90596 1.66249 1.52786 1.37110 1.21296 0.87952 0.99995 0.92711 0.87635 1.59202 1.63246 1.10464 1.01318 1.22515 0.98286 0.92358 0.98857 1.22775 0.94785 0.97114 1.00754 1.22690 0.97593 0.96422 1.00331 1.22956 0.97412 0.97191 0.99312 0.86021 0.84313 0.89644 0.91261 0.92391 0.93108 0.92727 0.83896 0.83742 0.90345 0.88049 0.93477 0.91683 0.89763 0.93779 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.45 18.54 20.01 0.37 -15.08 16 2 C 0.24 6.24 15.43 89.44 1.38 7.62 16 3 C -0.03 -0.59 6.03 28.79 0.17 -0.42 16 4 C 0.12 3.41 5.36 86.38 0.46 3.88 16 5 N -0.59 -19.16 2.46 -826.17 -2.03 -21.19 16 6 C 0.21 7.42 4.01 85.63 0.34 7.76 16 7 C -0.53 -24.64 8.52 25.60 0.22 -24.42 16 8 H 0.04 1.95 7.35 -2.91 -0.02 1.92 16 9 C 0.02 1.12 5.47 84.65 0.46 1.59 16 10 N -0.94 -52.79 13.96 21.45 0.30 -52.49 16 11 Si 0.93 36.37 27.47 68.60 1.88 38.25 16 12 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 13 H -0.30 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.23 -7.58 6.54 99.48 0.65 -6.93 16 15 C 0.49 16.26 6.85 87.66 0.60 16.86 16 16 O -0.59 -21.31 15.83 -3.04 -0.05 -21.36 16 17 C 0.10 2.91 2.64 44.17 0.12 3.03 16 18 H 0.11 3.23 5.90 -2.39 -0.01 3.22 16 19 N -0.81 -20.02 8.17 -171.80 -1.40 -21.42 16 20 C -0.10 -3.43 3.46 -10.18 -0.04 -3.46 16 21 C -0.12 -3.57 7.54 31.12 0.23 -3.33 16 22 C -0.13 -3.72 8.07 31.12 0.25 -3.47 16 23 C -0.13 -3.92 7.38 31.22 0.23 -3.69 16 24 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 27 H 0.07 2.18 7.40 -2.38 -0.02 2.17 16 28 H 0.06 1.87 7.13 -2.39 -0.02 1.85 16 29 H 0.05 1.68 5.33 -2.39 -0.01 1.67 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.35 7.34 9.08 -89.70 -0.81 6.53 16 32 H 0.35 8.79 6.34 -89.70 -0.57 8.22 16 33 H 0.08 3.37 5.94 -2.39 -0.01 3.35 16 34 H 0.10 2.78 7.77 -2.38 -0.02 2.76 16 35 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 2.65 5.83 -2.39 -0.01 2.64 16 Total: -1.00 -60.95 321.27 3.16 -57.79 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.35 Total: 33.56 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 4.44 Total: 1.94 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -2.76 Total: -110.17 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 1.88 Total: 38.25 kcal Total: -60.95 3.16 -57.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399020773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.167 kcal (2) G-P(sol) polarization free energy of solvation -60.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds