Wall clock time and date at job start Mon Mar 30 2020 04:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.39869 * 126.04006 * 300.02681 * 4 2 1 6 6 N 1.30837 * 108.20397 * 179.97438 * 5 4 2 7 7 N 1.40085 * 108.20285 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03671 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47067 * 304.97707 * 8 7 6 10 10 O 1.21278 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99897 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99951 * 0.02562 * 11 9 8 13 13 C 1.46501 * 119.99579 * 180.02562 * 11 9 8 14 14 C 1.50697 * 109.46899 * 90.00183 * 13 11 9 15 15 H 1.07999 * 120.00669 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99928 * 179.97438 * 14 13 11 17 17 N 1.31519 * 119.99869 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00313 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47712 * 89.99748 * 18 16 14 20 20 H 1.48504 * 109.46981 * 210.00110 * 18 16 14 21 21 H 1.48503 * 109.46742 * 329.99597 * 18 16 14 22 22 C 1.34944 * 107.92669 * 359.75984 * 7 6 5 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.08003 * 125.89815 * 359.95815 * 5 4 2 31 31 H 1.09003 * 109.47069 * 64.97651 * 8 7 6 32 32 H 1.09000 * 109.47494 * 184.97629 * 8 7 6 33 33 H 1.08995 * 109.47410 * 90.00077 * 12 11 9 34 34 H 1.08998 * 109.47093 * 209.99952 * 12 11 9 35 35 H 1.09002 * 109.46926 * 329.99643 * 12 11 9 36 36 H 1.09000 * 109.46694 * 210.00000 * 13 11 9 37 37 H 1.09000 * 109.47183 * 329.99976 * 13 11 9 38 38 H 0.97001 * 119.99949 * 180.02562 * 17 16 14 39 39 H 1.08003 * 126.12591 * 180.24194 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7732 -0.3447 2.5553 6 7 2.3770 -1.1992 3.3408 7 7 3.0401 -2.1374 2.5393 8 6 3.8388 -3.2686 3.0178 9 6 4.9099 -2.7676 3.9522 10 8 4.9971 -1.5826 4.1949 11 7 5.7701 -3.6368 4.5189 12 6 5.6643 -5.0683 4.2261 13 6 6.8110 -3.1498 5.4276 14 6 6.2823 -3.1423 6.8388 15 1 5.2723 -3.4681 7.0389 16 6 7.0886 -2.7205 7.8747 17 7 8.3187 -2.3242 7.6312 18 14 6.4337 -2.7119 9.6241 19 1 6.7176 -4.0208 10.2655 20 1 7.0955 -1.6289 10.3951 21 1 4.9672 -2.4790 9.6024 22 6 2.8084 -1.8188 1.2487 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.1776 0.4978 2.8748 31 1 3.1942 -3.9705 3.5470 32 1 4.3029 -3.7706 2.1689 33 1 6.2785 -5.3081 3.3582 34 1 6.0109 -5.6416 5.0859 35 1 4.6248 -5.3204 4.0165 36 1 7.6802 -3.8048 5.3686 37 1 7.0984 -2.1380 5.1419 38 1 8.8861 -2.0278 8.3600 39 1 3.1785 -2.3513 0.3850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402073374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:44 Heat of formation + Delta-G solvation = 13.990786 kcal Electronic energy + Delta-G solvation = -19871.345527 eV Core-core repulsion = 16814.852763 eV Total energy + Delta-G solvation = -3056.492764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.20791 -40.48500 -36.72369 -36.36681 -34.83142 -33.75894 -30.80277 -29.93007 -28.06744 -27.82816 -27.16505 -24.81757 -23.20998 -22.11508 -20.80473 -19.75209 -18.75385 -18.14817 -17.70882 -16.93858 -16.59859 -16.09390 -15.57673 -15.54384 -15.05969 -14.67190 -14.46097 -14.26642 -13.83692 -13.70678 -13.61199 -13.49707 -13.24101 -13.14842 -12.88864 -12.80380 -12.56230 -12.25232 -12.17616 -11.91215 -11.75166 -11.73613 -11.13411 -10.92202 -10.67992 -10.22669 -9.47111 -9.19616 -8.26848 -6.41572 1.02445 1.32226 1.36111 1.46159 1.58391 1.71539 1.98034 2.29510 2.41444 3.02747 3.51893 3.73104 3.98901 4.09392 4.13878 4.21570 4.37716 4.43650 4.50101 4.72554 4.83888 4.86890 4.90832 4.93995 4.94672 4.99379 5.13493 5.17601 5.27129 5.34454 5.50614 5.53809 5.60644 5.77162 5.82591 6.01650 6.17953 6.64816 6.71470 6.87299 7.23672 7.40997 8.80197 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.004063 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.431699 B = 6889.146658 C = 7277.332905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 C -0.142 4.142 4 C -0.237 4.237 5 C 0.034 3.966 6 N -0.326 5.326 7 N -0.371 5.371 8 C 0.126 3.874 9 C 0.479 3.521 10 O -0.580 6.580 11 N -0.608 5.608 12 C 0.072 3.928 13 C 0.262 3.738 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.053 3.947 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.186 0.814 31 H 0.131 0.869 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.029 0.971 37 H -0.008 1.008 38 H 0.268 0.732 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 -3.916 -18.345 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.248 4.248 5 C -0.153 4.153 6 N -0.147 5.147 7 N -0.153 5.153 8 C 0.002 3.998 9 C 0.266 3.734 10 O -0.459 6.459 11 N -0.341 5.341 12 C -0.070 4.070 13 C 0.141 3.859 14 C -0.583 4.583 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.202 1.202 22 C -0.092 4.092 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.203 0.797 31 H 0.148 0.852 32 H 0.189 0.811 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.011 0.989 38 H 0.077 0.923 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.982 -3.733 -16.865 21.608 hybrid contribution 0.157 0.608 0.719 0.954 sum -12.825 -3.125 -16.147 20.856 Atomic orbital electron populations 1.21786 0.94098 1.01697 1.01913 1.19418 0.95699 0.94729 0.93066 1.21820 1.00282 0.95912 1.01950 1.20369 1.08758 1.00350 0.95371 1.24050 0.99568 0.99194 0.92449 1.77498 1.12899 1.03400 1.20881 1.48166 1.39443 1.22999 1.04698 1.21782 0.91314 0.85904 1.00831 1.21350 0.83352 0.86374 0.82357 1.90721 1.72589 1.18957 1.63619 1.48171 1.31941 1.08896 1.45060 1.22067 1.03957 0.78589 1.02346 1.18722 0.86133 0.93640 0.87446 1.21705 0.99121 1.44338 0.93147 0.93145 1.25859 0.95064 0.94353 1.03895 1.70046 1.08316 1.44451 1.33952 0.85425 0.78066 0.78611 0.78766 1.18323 1.20543 1.20236 1.23019 0.99815 0.98476 0.87841 0.93372 0.92927 0.91216 0.89292 0.94165 0.90901 0.93494 0.79728 0.85162 0.81139 0.90073 0.91482 0.88358 0.95307 0.98943 0.92342 0.77007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.08 71.98 0.65 -1.37 16 2 C -0.01 -0.16 3.28 -11.54 -0.04 -0.20 16 3 C -0.14 -2.53 9.08 71.98 0.65 -1.87 16 4 C -0.24 -5.78 4.80 -20.15 -0.10 -5.87 16 5 C 0.03 1.05 11.45 85.24 0.98 2.02 16 6 N -0.33 -12.62 11.64 -57.02 -0.66 -13.28 16 7 N -0.37 -11.57 3.40 -351.78 -1.20 -12.77 16 8 C 0.13 3.38 5.54 85.63 0.47 3.85 16 9 C 0.48 20.16 7.70 87.66 0.68 20.83 16 10 O -0.58 -32.16 15.29 -3.02 -0.05 -32.20 16 11 N -0.61 -25.35 2.86 -851.13 -2.43 -27.78 16 12 C 0.07 1.91 10.24 127.77 1.31 3.22 16 13 C 0.26 14.37 5.16 85.63 0.44 14.81 16 14 C -0.54 -32.31 9.39 25.60 0.24 -32.07 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.43 5.46 84.65 0.46 0.89 16 17 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 18 Si 0.97 46.30 29.54 68.60 2.03 48.33 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 C 0.05 1.24 11.34 83.54 0.95 2.19 16 23 H 0.05 0.77 8.02 -2.39 -0.02 0.75 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.09 1.21 8.11 -2.39 -0.02 1.19 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.90 8.02 -2.39 -0.02 0.88 16 30 H 0.19 4.86 8.06 -2.91 -0.02 4.84 16 31 H 0.13 2.88 7.40 -2.39 -0.02 2.87 16 32 H 0.17 2.60 8.04 -2.39 -0.02 2.58 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 35 H 0.10 1.78 6.44 -2.39 -0.02 1.76 16 36 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 37 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 39 H 0.21 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -86.57 332.40 5.69 -80.88 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.02 Total: 7.42 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.70 Total: 6.43 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.01 Total: -110.86 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.20 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -86.57 5.69 -80.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402073374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.870 kcal (2) G-P(sol) polarization free energy of solvation -86.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds