Wall clock time and date at job start Mon Mar 30 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 117.00246 * 2 1 4 4 N 1.32540 * 120.07061 * 0.02562 * 3 2 1 5 5 C 1.32201 * 119.93621 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.08089 * 359.97438 * 5 4 3 7 7 N 1.32214 * 120.14498 * 359.97438 * 6 5 4 8 8 C 1.32003 * 120.06233 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.04032 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47086 * 89.99937 * 9 8 7 11 11 C 1.46898 * 111.00005 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47327 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47158 * 300.00062 * 12 11 10 14 14 C 1.53000 * 109.46970 * 60.00059 * 12 11 10 15 15 C 1.50701 * 109.47285 * 179.97438 * 12 11 10 16 16 H 1.07998 * 119.99789 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00117 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00122 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46585 * 120.00203 * 19 17 15 22 22 H 1.48498 * 109.47233 * 240.00065 * 19 17 15 23 23 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46783 * 299.99876 * 1 2 3 25 25 H 1.09002 * 109.47374 * 60.00095 * 1 2 3 26 26 H 1.07997 * 119.96532 * 179.97438 * 5 4 3 27 27 H 1.08004 * 119.93180 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.47100 * 209.99908 * 9 8 7 29 29 H 1.08998 * 109.47249 * 329.99605 * 9 8 7 30 30 H 1.00907 * 111.00060 * 56.04692 * 10 9 8 31 31 H 1.09004 * 109.47472 * 299.99727 * 11 10 9 32 32 H 1.08999 * 109.47651 * 59.99895 * 11 10 9 33 33 H 1.09006 * 109.47078 * 59.99934 * 13 12 11 34 34 H 1.08993 * 109.47170 * 179.97438 * 13 12 11 35 35 H 1.09004 * 109.47318 * 299.99829 * 13 12 11 36 36 H 1.09005 * 109.47154 * 59.99785 * 14 12 11 37 37 H 1.09002 * 109.47178 * 180.02562 * 14 12 11 38 38 H 1.09006 * 109.47168 * 300.00006 * 14 12 11 39 39 H 0.96999 * 119.99782 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3245 2.3213 0.0005 5 6 1.9275 3.4978 0.0010 6 6 3.3081 3.5688 0.0016 7 7 4.0299 2.4611 0.0021 8 6 3.4337 1.2834 0.0016 9 6 4.2569 0.0211 0.0016 10 7 4.5239 -0.3893 1.3865 11 6 5.3266 -1.6190 1.4257 12 6 5.5841 -2.0139 2.8814 13 6 6.3409 -0.8881 3.5889 14 6 4.2487 -2.2538 3.5886 15 6 6.4070 -3.2757 2.9216 16 1 6.7158 -3.7485 2.0010 17 6 6.7665 -3.8260 4.1335 18 7 6.3908 -3.2499 5.2546 19 14 7.7859 -5.3905 4.1834 20 1 8.0762 -5.8366 2.7970 21 1 9.0621 -5.1272 4.8957 22 1 7.0304 -6.4511 4.8971 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.3410 4.4046 0.0010 27 1 3.7982 4.5313 0.0024 28 1 3.7101 -0.7693 -0.5127 29 1 5.2010 0.2030 -0.5119 30 1 3.6640 -0.5018 1.9025 31 1 4.7876 -2.4210 0.9213 32 1 6.2781 -1.4481 0.9223 33 1 5.7452 0.0244 3.5599 34 1 6.5239 -1.1692 4.6260 35 1 7.2923 -0.7172 3.0851 36 1 3.7095 -3.0558 3.0844 37 1 4.4321 -2.5346 4.6257 38 1 3.6531 -1.3413 3.5595 39 1 6.6434 -3.6373 6.1072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459736229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:07 Heat of formation + Delta-G solvation = -10.743382 kcal Electronic energy + Delta-G solvation = -20255.857625 eV Core-core repulsion = 17198.292307 eV Total energy + Delta-G solvation = -3057.565318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32994 -39.38273 -38.69840 -36.18001 -34.77219 -33.18572 -31.66809 -28.47977 -27.85248 -27.51311 -27.22752 -25.09501 -24.73593 -23.26706 -20.35858 -19.45436 -19.13502 -18.00094 -17.34277 -17.27705 -16.57070 -16.13182 -15.73657 -15.66972 -15.39369 -14.97466 -14.70053 -14.20435 -13.98497 -13.69880 -13.26204 -13.08516 -12.92946 -12.85530 -12.58066 -12.50715 -12.47229 -12.40212 -12.11398 -12.07184 -11.91176 -11.31538 -11.00168 -10.59571 -10.33789 -10.19652 -9.67016 -9.19665 -7.95153 -6.12066 -0.19312 0.12391 1.42991 1.46055 1.55911 1.94110 2.47834 2.63568 3.09697 3.15774 3.27142 3.45668 3.63254 4.07285 4.20576 4.38066 4.38608 4.42149 4.50885 4.59148 4.69126 4.70362 4.79160 4.86904 5.03166 5.16758 5.18796 5.28521 5.42803 5.53229 5.71410 5.76368 6.00317 6.11765 6.20488 6.24172 6.32243 6.46237 6.57867 6.79668 6.96879 7.55484 9.03601 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032105 B = 0.004284 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.928891 B = 6533.791670 C = 6881.502998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.264 3.736 4 N -0.508 5.508 5 C 0.096 3.904 6 C 0.009 3.991 7 N -0.417 5.417 8 C 0.060 3.940 9 C 0.121 3.879 10 N -0.678 5.678 11 C 0.091 3.909 12 C 0.059 3.941 13 C -0.104 4.104 14 C -0.118 4.118 15 C -0.523 4.523 16 H 0.047 0.953 17 C 0.021 3.979 18 N -0.905 5.905 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.119 0.881 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.208 0.792 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.335 0.665 31 H 0.015 0.985 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.049 0.951 35 H 0.012 0.988 36 H 0.019 0.981 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 12.274 -11.230 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.219 6.219 3 C 0.082 3.918 4 N -0.237 5.237 5 C -0.063 4.063 6 C -0.151 4.151 7 N -0.133 5.133 8 C -0.083 4.083 9 C -0.009 4.009 10 N -0.310 5.310 11 C -0.037 4.037 12 C 0.059 3.941 13 C -0.162 4.162 14 C -0.176 4.176 15 C -0.562 4.562 16 H 0.066 0.934 17 C -0.178 4.178 18 N -0.544 5.544 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.137 0.863 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.233 0.767 27 H 0.225 0.775 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.154 0.846 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.193 12.331 -10.983 19.949 hybrid contribution -0.274 -1.459 0.053 1.485 sum -11.467 10.872 -10.931 19.214 Atomic orbital electron populations 1.23138 0.75465 1.04859 1.02575 1.86304 1.24701 1.23619 1.87260 1.20780 0.90504 0.86304 0.94181 1.68154 1.40124 0.99078 1.16339 1.24259 0.94195 0.95681 0.92181 1.24301 0.92953 0.98464 0.99366 1.68284 1.40022 0.98157 1.06795 1.21248 0.88874 0.95342 1.02812 1.20558 0.98340 0.90736 0.91216 1.60547 1.23398 1.35374 1.11722 1.21857 0.95657 0.87898 0.98338 1.18157 0.92841 0.93056 0.90094 1.21455 0.97210 0.96440 1.01069 1.21645 0.96688 0.96911 1.02397 1.21443 1.33069 1.09552 0.92143 0.93432 1.25555 0.96969 0.99708 0.95520 1.69984 1.46691 1.40347 0.97423 0.85682 0.78641 0.80369 0.77944 1.19522 1.20988 1.20868 0.86274 0.92244 0.91622 0.76652 0.77523 0.93040 0.89722 0.84627 0.96680 0.92816 0.95340 0.93242 0.96924 0.96163 0.92495 0.95511 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.40 113.37 1.18 1.83 16 2 O -0.31 -8.45 9.55 -89.93 -0.86 -9.31 16 3 C 0.26 7.34 7.47 84.79 0.63 7.97 16 4 N -0.51 -11.89 9.40 -308.17 -2.90 -14.79 16 5 C 0.10 1.63 11.22 84.64 0.95 2.58 16 6 C 0.01 0.16 11.21 84.63 0.95 1.11 16 7 N -0.42 -11.79 10.42 -182.90 -1.91 -13.70 16 8 C 0.06 1.81 6.32 42.73 0.27 2.08 16 9 C 0.12 3.96 5.77 85.56 0.49 4.45 16 10 N -0.68 -25.81 5.70 -517.93 -2.95 -28.76 16 11 C 0.09 3.92 4.59 86.31 0.40 4.32 16 12 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 13 C -0.10 -5.28 8.09 71.98 0.58 -4.70 16 14 C -0.12 -5.77 7.92 71.98 0.57 -5.20 16 15 C -0.52 -28.68 8.01 25.60 0.21 -28.48 16 16 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 17 C 0.02 1.17 5.15 84.65 0.44 1.60 16 18 N -0.91 -51.29 9.35 21.45 0.20 -51.09 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.11 8.11 -2.39 -0.02 1.10 16 25 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 26 H 0.22 1.48 8.06 -2.91 -0.02 1.46 16 27 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 28 H 0.05 1.62 7.54 -2.38 -0.02 1.60 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.34 12.92 6.77 -89.69 -0.61 12.31 16 31 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.03 1.34 7.60 -2.38 -0.02 1.33 16 34 H 0.05 2.74 6.07 -2.39 -0.01 2.73 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 38 H 0.03 1.16 6.57 -2.38 -0.02 1.15 16 39 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -65.38 319.85 0.69 -64.69 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.44 Total: 16.67 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 6.63 Total: -9.53 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -7.55 Total: -108.34 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.86 Total: -9.31 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.38 0.69 -64.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459736229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.950 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds