Wall clock time and date at job start Mon Mar 30 2020 04:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30255 * 125.62413 * 2 1 4 4 C 1.34475 * 108.70306 * 179.77764 * 3 2 1 5 5 C 1.50698 * 126.16591 * 180.26663 * 4 3 2 6 6 C 1.34327 * 107.66807 * 0.39597 * 4 3 2 7 7 C 1.50701 * 126.44239 * 179.87602 * 6 4 3 8 8 N 1.46900 * 109.47460 * 89.71039 * 7 6 4 9 9 C 1.46891 * 111.00538 * 189.99759 * 8 7 6 10 10 C 1.53236 * 109.34490 * 187.25409 * 9 8 7 11 11 N 1.47086 * 108.51747 * 306.17144 * 10 9 8 12 12 C 1.36936 * 120.87786 * 231.18160 * 11 10 9 13 13 H 1.07993 * 120.00304 * 27.13527 * 12 11 10 14 14 C 1.38813 * 119.99575 * 206.85386 * 12 11 10 15 15 N 1.31614 * 120.00290 * 17.16731 * 14 12 11 16 16 Si 1.86810 * 119.99564 * 197.16760 * 14 12 11 17 17 H 1.48494 * 109.47108 * 60.00166 * 16 14 12 18 18 H 1.48503 * 109.46632 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47043 * 300.00011 * 16 14 12 20 20 C 1.47083 * 118.23837 * 51.45711 * 11 10 9 21 21 C 1.46900 * 110.99950 * 314.30370 * 8 7 6 22 22 O 1.33975 * 125.61953 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.47342 * 269.97574 * 1 2 3 24 24 H 1.08998 * 109.47232 * 29.97392 * 1 2 3 25 25 H 1.09001 * 109.47477 * 149.97526 * 1 2 3 26 26 H 1.09000 * 109.47421 * 270.14496 * 5 4 3 27 27 H 1.08998 * 109.47379 * 30.15170 * 5 4 3 28 28 H 1.09006 * 109.46901 * 150.14693 * 5 4 3 29 29 H 1.08997 * 109.47436 * 329.71191 * 7 6 4 30 30 H 1.09001 * 109.46989 * 209.70907 * 7 6 4 31 31 H 1.09002 * 109.49046 * 67.29429 * 9 8 7 32 32 H 1.08999 * 109.49556 * 307.21622 * 9 8 7 33 33 H 1.08998 * 109.63090 * 186.46185 * 10 9 8 34 34 H 1.09003 * 109.78826 * 65.97260 * 10 9 8 35 35 H 0.97001 * 119.99757 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.62320 * 68.25155 * 20 11 10 37 37 H 1.08997 * 109.62861 * 188.82856 * 20 11 10 38 38 H 1.09000 * 109.49232 * 292.70484 * 21 8 7 39 39 H 1.09005 * 109.49167 * 52.75416 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6674 0.0049 5 6 4.7570 1.5725 0.0124 6 6 3.5697 -0.6757 -0.0008 7 6 4.7936 -1.5550 -0.0009 8 7 5.1912 -1.8411 1.3840 9 6 6.5067 -2.4930 1.4301 10 6 6.8034 -2.9365 2.8666 11 7 6.6541 -1.7736 3.7547 12 6 7.6427 -1.4332 4.6390 13 1 8.6694 -1.6927 4.4273 14 6 7.3258 -0.7494 5.8047 15 7 6.0818 -0.7209 6.2335 16 14 8.6652 0.1304 6.7648 17 1 9.2950 1.1629 5.9032 18 1 8.0714 0.7798 7.9611 19 1 9.6936 -0.8515 7.1931 20 6 5.4123 -0.9898 3.6722 21 6 5.1729 -0.6197 2.1999 22 8 2.2872 -1.0891 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 5.0506 1.7951 -1.0135 27 1 4.5115 2.5001 0.5295 28 1 5.5805 1.0769 0.5266 29 1 5.6080 -1.0442 -0.5146 30 1 4.5694 -2.4897 -0.5150 31 1 7.2725 -1.7907 1.1008 32 1 6.5046 -3.3634 0.7739 33 1 7.8230 -3.3167 2.9293 34 1 6.1028 -3.7168 3.1640 35 1 5.8604 -0.2428 7.0479 36 1 4.5782 -1.5853 4.0435 37 1 5.5117 -0.0825 4.2679 38 1 5.9572 0.0567 1.8599 39 1 4.2035 -0.1311 2.1016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589255787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:04 Heat of formation + Delta-G solvation = 32.486563 kcal Electronic energy + Delta-G solvation = -20839.368505 eV Core-core repulsion = 17783.677778 eV Total energy + Delta-G solvation = -3055.690727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.40917 -39.80999 -36.62102 -36.10136 -34.12442 -32.92809 -31.68282 -30.35084 -29.93839 -27.58918 -25.48093 -24.32818 -23.81191 -22.73576 -21.54954 -20.80157 -18.79214 -18.02865 -17.55953 -16.93928 -16.20097 -16.08470 -15.91172 -15.40194 -15.21725 -14.96469 -14.66272 -14.51888 -14.18029 -13.84020 -13.61872 -13.49309 -13.33394 -13.13266 -12.99379 -12.90341 -12.58801 -12.38088 -12.08017 -11.97491 -11.85510 -11.67969 -11.55355 -11.42340 -10.60049 -9.67257 -9.22189 -8.70804 -7.88978 -5.34572 0.37676 1.46351 1.49052 1.55882 1.56847 1.70656 2.50181 2.98720 3.06795 3.27068 3.64330 3.67194 3.80684 4.08241 4.21477 4.27150 4.32149 4.42919 4.51619 4.60161 4.61940 4.64124 4.66493 4.68798 4.81898 4.86497 4.89409 4.98607 5.07062 5.13039 5.17591 5.33291 5.41734 5.59405 5.61519 6.04690 6.12531 6.35096 6.71812 7.10553 7.81402 8.36433 9.18069 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.005221 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.842075 B = 5361.899332 C = 5707.472870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.184 3.816 3 N -0.514 5.514 4 C -0.018 4.018 5 C -0.077 4.077 6 C -0.053 4.053 7 C 0.142 3.858 8 N -0.544 5.544 9 C 0.056 3.944 10 C 0.142 3.858 11 N -0.612 5.612 12 C -0.265 4.265 13 H 0.073 0.927 14 C -0.052 4.052 15 N -0.939 5.939 16 Si 0.969 3.031 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.273 1.273 20 C 0.189 3.811 21 C 0.056 3.944 22 O -0.207 6.207 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.250 0.750 36 H -0.012 1.012 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 0.442 -16.285 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.023 4.023 3 N -0.245 5.245 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.106 4.106 7 C 0.015 3.985 8 N -0.271 5.271 9 C -0.072 4.072 10 C 0.016 3.984 11 N -0.337 5.337 12 C -0.395 4.395 13 H 0.091 0.909 14 C -0.247 4.247 15 N -0.586 5.586 16 Si 0.797 3.203 17 H -0.202 1.202 18 H -0.222 1.222 19 H -0.198 1.198 20 C 0.062 3.938 21 C -0.073 4.073 22 O -0.094 6.094 23 H 0.121 0.879 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.006 0.994 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.915 0.733 -15.949 17.399 hybrid contribution 1.130 0.351 0.807 1.432 sum -5.785 1.084 -15.142 16.246 Atomic orbital electron populations 1.20525 0.78021 1.06661 1.05886 1.27281 0.98092 0.78106 0.98771 1.70336 1.02131 1.31397 1.20635 1.21834 0.93882 0.92681 1.05391 1.20354 0.91439 0.97743 1.03823 1.23222 0.84016 0.94808 1.08526 1.20593 0.88770 0.98517 0.90607 1.62024 1.30002 1.25904 1.09127 1.22530 0.87552 0.98979 0.98148 1.21170 0.98948 0.88890 0.89368 1.44420 1.17466 1.29170 1.42599 1.19551 0.88544 1.33147 0.98241 0.90927 1.25839 0.98315 1.03144 0.97425 1.70200 1.19441 1.45572 1.23352 0.85311 0.78686 0.78780 0.77513 1.20236 1.22210 1.19835 1.20644 0.86555 0.94946 0.91614 1.22731 0.98937 0.90630 0.95002 1.84382 1.16836 1.38162 1.70018 0.87913 0.86759 0.87206 0.88805 0.90822 0.90673 0.89814 0.87252 0.94437 0.87765 0.91350 0.96892 0.94129 0.99355 0.92644 0.94608 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.84 10.51 71.23 0.75 -0.09 16 2 C 0.18 5.07 8.34 88.34 0.74 5.81 16 3 N -0.51 -16.34 11.29 -291.99 -3.30 -19.64 16 4 C -0.02 -0.55 5.72 41.26 0.24 -0.31 16 5 C -0.08 -2.01 9.73 71.24 0.69 -1.32 16 6 C -0.05 -1.62 5.55 24.79 0.14 -1.48 16 7 C 0.14 3.85 5.45 85.56 0.47 4.32 16 8 N -0.54 -18.93 4.77 -898.91 -4.29 -23.21 16 9 C 0.06 1.82 5.58 86.38 0.48 2.31 16 10 C 0.14 5.90 6.69 86.35 0.58 6.47 16 11 N -0.61 -31.65 3.03 -697.24 -2.11 -33.77 16 12 C -0.26 -14.73 9.63 84.03 0.81 -13.92 16 13 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 14 C -0.05 -2.96 4.93 84.86 0.42 -2.54 16 15 N -0.94 -57.25 11.16 21.65 0.24 -57.01 16 16 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.19 9.74 5.45 86.50 0.47 10.21 16 21 C 0.06 2.27 4.22 86.54 0.37 2.64 16 22 O -0.21 -6.39 10.78 -3.73 -0.04 -6.43 16 23 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.05 4.95 -2.38 -0.01 2.04 16 29 H 0.08 1.93 7.75 -2.39 -0.02 1.92 16 30 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 2.60 8.11 -2.39 -0.02 2.59 16 33 H 0.07 2.66 7.95 -2.39 -0.02 2.64 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.06 3.20 6.12 -2.39 -0.01 3.18 16 38 H 0.04 1.42 6.16 -2.39 -0.01 1.41 16 39 H 0.06 2.35 5.51 -2.38 -0.01 2.34 16 Total: -1.00 -71.57 309.77 -0.28 -71.86 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.04 Total: 8.88 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.14 Total: 12.08 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -9.46 Total: -133.62 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.04 Total: -6.43 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.57 -0.28 -71.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589255787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.342 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds