Wall clock time and date at job start Mon Mar 30 2020 04:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30177 * 126.80293 * 2 1 4 4 O 1.20922 * 111.60385 * 179.73561 * 3 2 1 5 5 C 1.34039 * 111.56899 * 0.02562 * 4 3 2 6 6 C 1.35448 * 106.44661 * 359.97438 * 5 4 3 7 7 C 1.50699 * 128.00610 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47278 * 259.97779 * 7 6 5 9 9 C 1.46900 * 110.99866 * 180.02562 * 8 7 6 10 10 C 1.53041 * 109.45902 * 275.06176 * 9 8 7 11 11 C 1.53189 * 109.31158 * 178.61410 * 10 9 8 12 12 N 1.46929 * 108.77505 * 54.64078 * 11 10 9 13 13 C 1.36937 * 120.62942 * 126.40897 * 12 11 10 14 14 H 1.07995 * 120.00326 * 332.60953 * 13 12 11 15 15 C 1.38810 * 119.99819 * 152.60838 * 13 12 11 16 16 N 1.31615 * 120.00460 * 159.34658 * 15 13 12 17 17 Si 1.86808 * 120.00008 * 339.34647 * 15 13 12 18 18 H 1.48497 * 109.47022 * 92.94198 * 17 15 13 19 19 H 1.48507 * 109.46778 * 212.94283 * 17 15 13 20 20 H 1.48499 * 109.46806 * 332.94096 * 17 15 13 21 21 C 1.46923 * 118.73830 * 306.38592 * 12 11 10 22 22 C 1.53048 * 109.45695 * 154.99807 * 9 8 7 23 23 H 1.08995 * 109.47089 * 90.02377 * 1 2 3 24 24 H 1.09004 * 109.46909 * 210.02074 * 1 2 3 25 25 H 1.08998 * 109.46918 * 330.02131 * 1 2 3 26 26 H 1.07997 * 126.77679 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47034 * 19.97758 * 7 6 5 28 28 H 1.09005 * 109.47175 * 139.98123 * 7 6 5 29 29 H 1.00907 * 111.00015 * 303.95191 * 8 7 6 30 30 H 1.08996 * 109.46232 * 35.02967 * 9 8 7 31 31 H 1.08995 * 109.50305 * 298.56943 * 10 9 8 32 32 H 1.09004 * 109.49084 * 58.66807 * 10 9 8 33 33 H 1.09001 * 109.59143 * 294.84859 * 11 10 9 34 34 H 1.09005 * 109.70455 * 174.49581 * 11 10 9 35 35 H 0.96998 * 120.00735 * 179.97438 * 16 15 13 36 36 H 1.08995 * 109.58888 * 293.82414 * 21 12 11 37 37 H 1.08998 * 109.70574 * 173.46626 * 21 12 11 38 38 H 1.08995 * 109.49747 * 301.33406 * 22 9 8 39 39 H 1.09001 * 109.49787 * 61.43251 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6025 -0.6068 0.0089 6 6 2.3540 -1.1320 0.0059 7 6 1.9591 -2.5864 0.0086 8 7 1.6030 -2.9996 -1.3554 9 6 1.2113 -4.4150 -1.3912 10 6 2.4620 -5.2870 -1.5223 11 6 2.0525 -6.7632 -1.5245 12 7 1.0552 -6.9757 -2.5824 13 6 1.2403 -7.9458 -3.5310 14 1 2.2397 -8.2534 -3.8010 15 6 0.1433 -8.5339 -4.1455 16 7 0.2855 -9.1424 -5.3038 17 14 -1.5351 -8.4616 -3.3284 18 1 -2.2796 -7.2789 -3.8307 19 1 -2.2946 -9.6971 -3.6477 20 1 -1.3650 -8.3513 -1.8573 21 6 -0.1445 -6.1278 -2.6029 22 6 0.2897 -4.6587 -2.5886 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 4.5339 -1.1534 0.0141 27 1 2.7948 -3.1891 0.3643 28 1 1.1020 -2.7290 0.6668 29 1 0.8734 -2.4132 -1.7321 30 1 0.6858 -4.6698 -0.4709 31 1 2.9746 -5.0503 -2.4546 32 1 3.1286 -5.0957 -0.6813 33 1 1.6213 -7.0243 -0.5581 34 1 2.9260 -7.3867 -1.7153 35 1 -0.4810 -9.5537 -5.7330 36 1 -0.7549 -6.3370 -1.7245 37 1 -0.7217 -6.3294 -3.5053 38 1 -0.5899 -4.0202 -2.5066 39 1 0.8227 -4.4278 -3.5109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590185607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:01 Heat of formation + Delta-G solvation = 83.097328 kcal Electronic energy + Delta-G solvation = -20186.813615 eV Core-core repulsion = 17133.317535 eV Total energy + Delta-G solvation = -3053.496079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.07739 -38.47148 -36.22506 -34.48939 -32.66135 -31.68805 -30.43539 -29.82184 -28.90634 -26.23231 -24.15432 -22.82904 -21.61093 -21.43716 -21.35389 -19.37308 -17.72384 -17.59509 -16.81797 -15.68346 -15.37180 -15.13949 -14.59131 -14.16115 -13.86857 -13.70548 -13.55893 -13.42642 -12.91886 -12.73617 -12.68965 -12.51082 -12.14747 -11.85840 -11.63447 -11.22209 -10.96668 -10.79733 -10.43969 -10.21673 -10.07101 -9.96479 -9.78682 -9.60351 -9.41159 -8.63638 -8.37842 -6.98458 -5.95084 -3.30621 1.34130 2.00605 3.10047 3.30003 3.46860 3.49470 3.95658 4.29594 4.34116 4.52160 4.72970 4.85079 4.95204 5.17061 5.22003 5.22784 5.31858 5.38217 5.44806 5.46383 5.59879 5.64430 5.67847 5.87151 5.92996 6.06958 6.16030 6.20561 6.32433 6.38417 6.59301 6.64062 6.74331 6.94387 7.16940 7.39625 7.96438 8.10060 8.33155 8.94229 9.72044 10.09917 11.21072 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.004030 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.624704 B = 6946.027354 C = 7324.162789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.043 4.043 6 C -0.193 4.193 7 C 0.135 3.865 8 N -0.682 5.682 9 C 0.096 3.904 10 C -0.119 4.119 11 C 0.147 3.853 12 N -0.605 5.605 13 C -0.259 4.259 14 H 0.086 0.914 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.289 1.289 19 H -0.303 1.303 20 H -0.271 1.271 21 C 0.129 3.871 22 C -0.134 4.134 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.217 0.783 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.338 0.662 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 15.992 12.476 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.125 4.125 6 C -0.198 4.198 7 C 0.006 3.994 8 N -0.313 5.313 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.021 3.979 12 N -0.329 5.329 13 C -0.387 4.387 14 H 0.103 0.897 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.713 3.287 18 H -0.217 1.217 19 H -0.231 1.231 20 H -0.197 1.197 21 C 0.003 3.997 22 C -0.174 4.174 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.234 0.766 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.156 0.844 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.985 17.060 12.156 21.160 hybrid contribution -1.890 -0.831 0.741 2.194 sum 1.095 16.229 12.898 20.759 Atomic orbital electron populations 1.20175 0.86168 1.03618 1.03561 1.23529 0.98937 0.88621 1.02824 1.73833 0.89513 1.24248 1.20016 1.84803 1.21492 1.23216 1.67472 1.25825 1.00888 0.83281 1.02499 1.21239 0.92376 0.97324 1.08834 1.20144 1.00471 0.87926 0.90862 1.60637 1.46945 1.04247 1.19499 1.21487 0.96070 0.86286 0.97475 1.22013 0.96115 0.96191 1.01546 1.20951 0.93008 0.93217 0.90720 1.44353 1.20711 1.37476 1.30345 1.18941 0.94308 1.12921 1.12560 0.89660 1.25277 0.97720 0.97801 0.96793 1.69835 1.30815 1.39953 1.14565 0.86957 0.85337 0.75760 0.80655 1.21684 1.23147 1.19660 1.21293 0.90071 0.88604 0.99762 1.22228 0.97801 0.98881 0.98513 0.89970 0.90225 0.90565 0.76644 0.89570 0.94056 0.84380 0.94359 0.91208 0.93089 0.96302 0.91708 0.92778 0.95954 0.90793 0.93153 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.01 0.37 -0.29 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 N -0.37 -4.64 12.07 33.42 0.40 -4.23 16 4 O 0.09 1.05 11.20 17.18 0.19 1.25 16 5 C -0.04 -0.39 12.26 29.74 0.36 -0.03 16 6 C -0.19 -2.01 5.84 -104.42 -0.61 -2.62 16 7 C 0.14 1.40 5.97 -4.98 -0.03 1.37 16 8 N -0.68 -8.49 6.30 -107.94 -0.68 -9.17 16 9 C 0.10 1.41 2.46 -67.67 -0.17 1.25 16 10 C -0.12 -1.90 5.59 -26.61 -0.15 -2.04 16 11 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 12 N -0.61 -14.19 2.77 -172.32 -0.48 -14.66 16 13 C -0.26 -7.21 10.04 -15.06 -0.15 -7.36 16 14 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 15 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 16 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 17 Si 0.88 22.21 24.35 -169.99 -4.14 18.07 16 18 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 19 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 20 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16 21 C 0.13 2.75 4.20 -3.71 -0.02 2.74 16 22 C -0.13 -2.29 5.36 -26.60 -0.14 -2.44 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.59 7.98 -51.93 -0.41 0.18 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.22 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.09 0.85 7.41 -51.93 -0.38 0.46 16 28 H 0.04 0.41 7.89 -51.93 -0.41 0.00 16 29 H 0.34 4.04 8.32 -39.29 -0.33 3.71 16 30 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.69 7.42 -51.93 -0.39 0.31 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.02 0.47 7.07 -51.93 -0.37 0.11 16 37 H 0.07 1.74 4.50 -51.93 -0.23 1.51 16 38 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 311.74 15.07 4.70 4.70 Total: -1.00 -31.64 311.74 -6.38 -38.02 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.91 Total: -0.50 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.24 Total: -6.42 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.02 Total: -55.11 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.19 Total: 1.25 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.64 -6.38 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590185607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.117 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds