Wall clock time and date at job start Mon Mar 30 2020 04:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30177 * 126.80293 * 2 1 4 4 O 1.20922 * 111.60385 * 179.73561 * 3 2 1 5 5 C 1.34039 * 111.56899 * 0.02562 * 4 3 2 6 6 C 1.35448 * 106.44661 * 359.97438 * 5 4 3 7 7 C 1.50699 * 128.00610 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47278 * 259.97779 * 7 6 5 9 9 C 1.46900 * 110.99866 * 180.02562 * 8 7 6 10 10 C 1.53041 * 109.45902 * 275.06176 * 9 8 7 11 11 C 1.53189 * 109.31158 * 178.61410 * 10 9 8 12 12 N 1.46929 * 108.77505 * 54.64078 * 11 10 9 13 13 C 1.36937 * 120.62942 * 126.40897 * 12 11 10 14 14 H 1.07995 * 120.00326 * 332.60953 * 13 12 11 15 15 C 1.38810 * 119.99819 * 152.60838 * 13 12 11 16 16 N 1.31615 * 120.00460 * 159.34658 * 15 13 12 17 17 Si 1.86808 * 120.00008 * 339.34647 * 15 13 12 18 18 H 1.48497 * 109.47022 * 92.94198 * 17 15 13 19 19 H 1.48507 * 109.46778 * 212.94283 * 17 15 13 20 20 H 1.48499 * 109.46806 * 332.94096 * 17 15 13 21 21 C 1.46923 * 118.73830 * 306.38592 * 12 11 10 22 22 C 1.53048 * 109.45695 * 154.99807 * 9 8 7 23 23 H 1.08995 * 109.47089 * 90.02377 * 1 2 3 24 24 H 1.09004 * 109.46909 * 210.02074 * 1 2 3 25 25 H 1.08998 * 109.46918 * 330.02131 * 1 2 3 26 26 H 1.07997 * 126.77679 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47034 * 19.97758 * 7 6 5 28 28 H 1.09005 * 109.47175 * 139.98123 * 7 6 5 29 29 H 1.00907 * 111.00015 * 303.95191 * 8 7 6 30 30 H 1.08996 * 109.46232 * 35.02967 * 9 8 7 31 31 H 1.08995 * 109.50305 * 298.56943 * 10 9 8 32 32 H 1.09004 * 109.49084 * 58.66807 * 10 9 8 33 33 H 1.09001 * 109.59143 * 294.84859 * 11 10 9 34 34 H 1.09005 * 109.70455 * 174.49581 * 11 10 9 35 35 H 0.96998 * 120.00735 * 179.97438 * 16 15 13 36 36 H 1.08995 * 109.58888 * 293.82414 * 21 12 11 37 37 H 1.08998 * 109.70574 * 173.46626 * 21 12 11 38 38 H 1.08995 * 109.49747 * 301.33406 * 22 9 8 39 39 H 1.09001 * 109.49787 * 61.43251 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6025 -0.6068 0.0089 6 6 2.3540 -1.1320 0.0059 7 6 1.9591 -2.5864 0.0086 8 7 1.6030 -2.9996 -1.3554 9 6 1.2113 -4.4150 -1.3912 10 6 2.4620 -5.2870 -1.5223 11 6 2.0525 -6.7632 -1.5245 12 7 1.0552 -6.9757 -2.5824 13 6 1.2403 -7.9458 -3.5310 14 1 2.2397 -8.2534 -3.8010 15 6 0.1433 -8.5339 -4.1455 16 7 0.2855 -9.1424 -5.3038 17 14 -1.5351 -8.4616 -3.3284 18 1 -2.2796 -7.2789 -3.8307 19 1 -2.2946 -9.6971 -3.6477 20 1 -1.3650 -8.3513 -1.8573 21 6 -0.1445 -6.1278 -2.6029 22 6 0.2897 -4.6587 -2.5886 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 4.5339 -1.1534 0.0141 27 1 2.7948 -3.1891 0.3643 28 1 1.1020 -2.7290 0.6668 29 1 0.8734 -2.4132 -1.7321 30 1 0.6858 -4.6698 -0.4709 31 1 2.9746 -5.0503 -2.4546 32 1 3.1286 -5.0957 -0.6813 33 1 1.6213 -7.0243 -0.5581 34 1 2.9260 -7.3867 -1.7153 35 1 -0.4810 -9.5537 -5.7330 36 1 -0.7549 -6.3370 -1.7245 37 1 -0.7217 -6.3294 -3.5053 38 1 -0.5899 -4.0202 -2.5066 39 1 0.8227 -4.4278 -3.5109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590185607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:00 Heat of formation + Delta-G solvation = 60.673499 kcal Electronic energy + Delta-G solvation = -20187.785985 eV Core-core repulsion = 17133.317535 eV Total energy + Delta-G solvation = -3054.468450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.86207 -39.82292 -37.36296 -35.60093 -34.12749 -33.02402 -31.91013 -31.21845 -29.61497 -27.44883 -25.75266 -24.25936 -23.09740 -22.25541 -22.19734 -20.82197 -18.83286 -18.53075 -18.28338 -17.30166 -16.57787 -15.99011 -15.83636 -15.79623 -15.29555 -15.06634 -14.39821 -14.33619 -14.26058 -14.13811 -13.77919 -13.55812 -13.35280 -13.31681 -13.04230 -12.52229 -12.44210 -12.18028 -12.04539 -11.81821 -11.59480 -11.35723 -11.19697 -10.84310 -10.69031 -10.39248 -9.33217 -8.91894 -8.15301 -5.46669 0.61095 1.23649 1.30254 1.41948 1.51288 2.42772 2.42860 3.06974 3.18174 3.32511 3.44707 3.63787 3.89627 3.97777 4.06691 4.20147 4.35519 4.44421 4.55879 4.57714 4.60230 4.66281 4.71931 4.80722 4.82174 4.87900 4.94171 4.98436 5.01760 5.09221 5.21650 5.25514 5.31127 5.58791 5.88843 6.11114 6.15005 6.45400 6.94348 7.35241 7.64964 8.04887 9.04936 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.004030 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.624704 B = 6946.027354 C = 7324.162789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.013 3.987 3 N -0.403 5.403 4 O 0.082 5.918 5 C -0.031 4.031 6 C -0.209 4.209 7 C 0.141 3.859 8 N -0.685 5.685 9 C 0.106 3.894 10 C -0.108 4.108 11 C 0.141 3.859 12 N -0.621 5.621 13 C -0.249 4.249 14 H 0.049 0.951 15 C -0.037 4.037 16 N -0.960 5.960 17 Si 0.949 3.051 18 H -0.274 1.274 19 H -0.312 1.312 20 H -0.259 1.259 21 C 0.122 3.878 22 C -0.126 4.126 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.251 0.749 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.343 0.657 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.261 0.739 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 17.499 14.820 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 N -0.112 5.112 4 O 0.021 5.979 5 C -0.113 4.113 6 C -0.213 4.213 7 C 0.012 3.988 8 N -0.316 5.316 9 C -0.003 4.003 10 C -0.148 4.148 11 C 0.016 3.984 12 N -0.346 5.346 13 C -0.379 4.379 14 H 0.067 0.933 15 C -0.232 4.232 16 N -0.606 5.606 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.241 1.241 20 H -0.183 1.183 21 C -0.003 4.003 22 C -0.166 4.166 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.267 0.733 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.419 18.619 14.546 23.751 hybrid contribution -1.576 -1.268 0.023 2.023 sum 0.842 17.351 14.569 22.672 Atomic orbital electron populations 1.20282 0.84761 1.04431 1.04148 1.23997 1.00076 0.88641 1.01850 1.73837 0.90134 1.25392 1.21847 1.84771 1.21168 1.24295 1.67700 1.26516 1.02021 0.82561 1.00189 1.21314 0.92689 0.97228 1.10070 1.20155 1.01231 0.87818 0.89626 1.60524 1.47056 1.02879 1.21187 1.21259 0.94770 0.87562 0.96694 1.21855 0.97185 0.93913 1.01798 1.21146 0.91719 0.95502 0.89992 1.44501 1.22298 1.37066 1.30713 1.18889 0.92833 1.13338 1.12831 0.93292 1.25930 1.01738 0.98319 0.97199 1.69976 1.31949 1.42344 1.16350 0.85870 0.80617 0.75673 0.80038 1.20052 1.24141 1.18313 1.21356 0.89183 0.90888 0.98867 1.22077 0.99396 0.96224 0.98884 0.89405 0.88870 0.90324 0.73308 0.88570 0.92995 0.83831 0.93044 0.93379 0.89866 0.94551 0.92833 0.93004 0.94682 0.93462 0.90165 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.39 71.24 0.74 -0.41 16 2 C 0.01 0.27 7.33 43.58 0.32 0.59 16 3 N -0.40 -9.56 12.07 -49.55 -0.60 -10.16 16 4 O 0.08 1.70 11.20 71.64 0.80 2.50 16 5 C -0.03 -0.48 12.26 67.17 0.82 0.35 16 6 C -0.21 -3.68 5.84 -19.74 -0.12 -3.79 16 7 C 0.14 2.32 5.97 85.56 0.51 2.83 16 8 N -0.68 -14.44 6.30 -495.42 -3.12 -17.56 16 9 C 0.11 2.74 2.46 44.94 0.11 2.85 16 10 C -0.11 -3.13 5.59 30.67 0.17 -2.96 16 11 C 0.14 5.18 6.52 86.36 0.56 5.75 16 12 N -0.62 -28.64 2.77 -699.09 -1.94 -30.57 16 13 C -0.25 -14.18 10.04 84.03 0.84 -13.34 16 14 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 15 C -0.04 -2.19 5.23 84.86 0.44 -1.75 16 16 N -0.96 -60.76 13.97 21.65 0.30 -60.45 16 17 Si 0.95 46.15 24.35 68.60 1.67 47.82 16 18 H -0.27 -12.50 6.62 99.48 0.66 -11.84 16 19 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 20 H -0.26 -11.89 6.63 99.48 0.66 -11.23 16 21 C 0.12 4.97 4.20 86.37 0.36 5.33 16 22 C -0.13 -3.96 5.36 30.68 0.16 -3.79 16 23 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.07 7.98 -2.38 -0.02 1.06 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.25 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.10 1.42 7.41 -2.39 -0.02 1.40 16 28 H 0.05 0.78 7.89 -2.38 -0.02 0.76 16 29 H 0.34 6.90 8.32 -89.69 -0.75 6.16 16 30 H 0.05 1.24 7.80 -2.39 -0.02 1.22 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.90 7.42 -2.39 -0.02 1.88 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 2.04 7.93 -2.38 -0.02 2.02 16 35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.04 1.35 7.07 -2.39 -0.02 1.33 16 37 H 0.05 2.16 4.50 -2.39 -0.01 2.15 16 38 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -70.30 311.74 2.26 -68.04 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.21 Total: 8.73 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 4.94 Total: -8.35 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.35 Total: -118.74 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.80 Total: 2.50 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.82 kcal Total: -70.30 2.26 -68.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590185607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.709 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds