Wall clock time and date at job start Mon Mar 30 2020 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39873 * 126.03939 * 2 1 4 4 N 1.30845 * 108.20115 * 180.02562 * 3 2 1 5 5 N 1.40079 * 108.20737 * 359.97438 * 4 3 2 6 6 C 1.46502 * 126.03967 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47225 * 305.02973 * 6 5 4 8 8 N 1.46896 * 109.47157 * 180.02562 * 7 6 5 9 9 C 1.48530 * 110.99709 * 287.39135 * 8 7 6 10 10 C 1.54942 * 103.23043 * 200.27905 * 9 8 7 11 11 C 1.54595 * 102.91828 * 37.41654 * 10 9 8 12 12 O 1.42901 * 110.39366 * 97.00165 * 11 10 9 13 13 C 1.50697 * 110.31131 * 219.12946 * 11 10 9 14 14 H 1.07991 * 120.00449 * 115.43864 * 13 11 10 15 15 C 1.37885 * 119.99686 * 295.71695 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.47906 * 110.99828 * 170.00065 * 8 7 6 22 22 C 1.34954 * 107.92668 * 0.26741 * 5 4 3 23 23 H 1.08997 * 109.47231 * 90.02315 * 1 2 3 24 24 H 1.09000 * 109.46771 * 210.02361 * 1 2 3 25 25 H 1.09001 * 109.46527 * 330.01991 * 1 2 3 26 26 H 1.07999 * 125.90124 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47282 * 185.02326 * 6 5 4 28 28 H 1.09002 * 109.46366 * 65.02979 * 6 5 4 29 29 H 1.08998 * 109.47519 * 59.99498 * 7 6 5 30 30 H 1.09001 * 109.47111 * 300.00037 * 7 6 5 31 31 H 1.09003 * 110.67404 * 318.71543 * 9 8 7 32 32 H 1.09003 * 110.67111 * 81.67864 * 9 8 7 33 33 H 1.08993 * 110.72402 * 279.05887 * 10 9 8 34 34 H 1.09004 * 110.72630 * 155.77077 * 10 9 8 35 35 H 0.96702 * 113.99960 * 62.84760 * 12 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.92231 * 26.48716 * 21 8 7 38 38 H 1.09001 * 110.08118 * 265.28041 * 21 8 7 39 39 H 1.07996 * 126.12814 * 179.73880 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5845 -0.6706 -0.0003 6 6 4.7746 -1.5248 -0.0003 7 6 5.6717 -1.1498 -1.1815 8 7 6.8648 -2.0068 -1.1818 9 6 7.7905 -1.6306 -0.0829 10 6 9.1456 -2.2259 -0.5414 11 6 9.1245 -1.9962 -2.0700 12 8 9.8428 -0.8072 -2.4049 13 6 9.7165 -3.1830 -2.7855 14 1 9.0997 -3.7833 -3.4378 15 6 11.0445 -3.5059 -2.6029 16 7 11.7958 -2.7749 -1.8086 17 14 11.7766 -4.9816 -3.4838 18 1 11.6515 -4.7941 -4.9516 19 1 13.2107 -5.1129 -3.1215 20 1 11.0494 -6.2111 -3.0780 21 6 7.6359 -1.8414 -2.4330 22 6 2.3032 -1.0942 -0.0056 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.9951 2.1578 0.0004 27 1 4.4729 -2.5684 -0.0901 28 1 5.3227 -1.3840 0.9314 29 1 5.9734 -0.1063 -1.0917 30 1 5.1235 -1.2905 -2.1131 31 1 7.8581 -0.5466 0.0092 32 1 7.4708 -2.0761 0.8591 33 1 9.1966 -3.2902 -0.3119 34 1 9.9770 -1.6909 -0.0824 35 1 10.7826 -0.8386 -2.1791 36 1 12.7301 -3.0019 -1.6805 37 1 7.4568 -0.8510 -2.8515 38 1 7.3480 -2.6066 -3.1540 39 1 1.9725 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:22 Heat of formation + Delta-G solvation = 30.084067 kcal Electronic energy + Delta-G solvation = -19970.231554 eV Core-core repulsion = 16914.436647 eV Total energy + Delta-G solvation = -3055.794907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19993 -38.49706 -35.40920 -33.63217 -32.08159 -31.70733 -30.40230 -28.33989 -27.74126 -25.83930 -24.36959 -22.91652 -20.91018 -20.50192 -19.82767 -19.40076 -17.13939 -16.86373 -15.67015 -15.10138 -14.88768 -14.62689 -14.34337 -13.96191 -13.79961 -13.42696 -13.19167 -13.08446 -12.51974 -12.41732 -12.18271 -12.00827 -11.90776 -11.42133 -11.20977 -11.03635 -10.83790 -10.59170 -10.51450 -10.46194 -10.34013 -9.96678 -9.43132 -9.18604 -8.59136 -8.34502 -8.13199 -7.92206 -6.20700 -4.26838 1.89414 2.50835 2.75987 3.25190 3.29740 3.32934 4.29579 4.35201 4.72730 4.79607 4.96727 5.08030 5.08857 5.18678 5.36335 5.40864 5.57735 5.63216 5.70355 5.79587 5.86228 6.01186 6.05013 6.07596 6.10590 6.20347 6.40806 6.42400 6.64923 6.88574 7.00182 7.01938 7.22699 7.47674 7.57950 7.61373 7.71619 7.82619 8.14917 8.74257 9.40083 9.52455 10.87175 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.048245 B = 0.003562 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.236593 B = 7858.405327 C = 8055.728777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.251 4.251 3 C 0.042 3.958 4 N -0.292 5.292 5 N -0.364 5.364 6 C 0.139 3.861 7 C 0.038 3.962 8 N -0.513 5.513 9 C 0.028 3.972 10 C -0.118 4.118 11 C 0.244 3.756 12 O -0.595 6.595 13 C -0.529 4.529 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.056 3.944 22 C 0.055 3.945 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.179 0.821 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.267 0.733 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 2.701 5.003 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.263 4.263 3 C -0.144 4.144 4 N -0.113 5.113 5 N -0.146 5.146 6 C 0.018 3.982 7 C -0.092 4.092 8 N -0.238 5.238 9 C -0.100 4.100 10 C -0.157 4.157 11 C 0.204 3.796 12 O -0.405 6.405 13 C -0.567 4.567 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.071 4.071 22 C -0.092 4.092 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.196 0.804 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.235 0.765 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.899 2.625 4.917 16.848 hybrid contribution 0.445 -0.440 -0.298 0.693 sum -15.455 2.184 4.619 16.277 Atomic orbital electron populations 1.20010 0.89528 1.01861 1.01328 1.20124 0.96989 0.91958 1.17250 1.23778 0.90075 0.99700 1.00846 1.77383 1.21150 0.89180 1.23572 1.48709 1.05600 1.04677 1.55643 1.21727 0.83394 0.92482 1.00618 1.22405 0.93101 0.96435 0.97231 1.64722 1.05279 1.49150 1.04669 1.23386 0.94704 0.97866 0.94025 1.22996 0.93073 1.00583 0.99069 1.19330 0.86461 0.83838 0.89987 1.86093 1.27008 1.40374 1.86975 1.21653 0.95500 1.11775 1.27814 0.92006 1.25018 0.97008 0.96815 0.94521 1.69607 1.07567 1.39680 1.37176 0.86504 0.77873 0.82632 0.80091 1.20138 1.21212 1.20106 1.22839 0.94069 0.99512 0.90655 1.22369 0.84272 1.00038 1.02506 0.92338 0.92360 0.92094 0.80401 0.87809 0.89720 0.93387 0.90983 0.94526 0.91688 0.91291 0.91610 0.76469 0.92262 0.94471 0.90159 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.37 36.00 0.37 -0.16 16 2 C -0.25 -2.75 6.10 -105.05 -0.64 -3.39 16 3 C 0.04 0.51 11.96 -17.36 -0.21 0.31 16 4 N -0.29 -4.40 12.42 30.63 0.38 -4.02 16 5 N -0.36 -4.96 3.68 -61.37 -0.23 -5.19 16 6 C 0.14 1.85 6.60 -4.04 -0.03 1.82 16 7 C 0.04 0.61 4.89 -3.83 -0.02 0.59 16 8 N -0.51 -9.70 5.24 -230.45 -1.21 -10.91 16 9 C 0.03 0.53 5.91 -1.90 -0.01 0.52 16 10 C -0.12 -2.73 5.50 -24.87 -0.14 -2.86 16 11 C 0.24 6.09 0.99 -90.41 -0.09 6.00 16 12 O -0.59 -15.74 12.92 -35.23 -0.46 -16.20 16 13 C -0.53 -14.21 8.10 -34.44 -0.28 -14.49 16 14 H 0.06 1.65 7.34 -52.49 -0.39 1.26 16 15 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 16 N -0.90 -24.06 10.89 55.43 0.60 -23.45 16 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.06 1.24 6.13 -2.75 -0.02 1.23 16 22 C 0.05 0.62 11.36 -17.22 -0.20 0.42 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.08 1.13 7.37 -51.93 -0.38 0.75 16 29 H 0.05 0.86 7.83 -51.93 -0.41 0.46 16 30 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 31 H 0.04 0.72 7.81 -51.93 -0.41 0.31 16 32 H 0.06 1.10 7.80 -51.93 -0.40 0.69 16 33 H 0.07 1.66 7.86 -51.93 -0.41 1.26 16 34 H 0.07 1.57 8.06 -51.93 -0.42 1.16 16 35 H 0.38 10.28 7.07 45.56 0.32 10.60 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 37 H 0.04 0.83 7.59 -51.93 -0.39 0.43 16 38 H 0.08 1.76 7.39 -51.93 -0.38 1.37 16 39 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -29.29 320.31 -7.80 -37.09 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.36 Total: 10.46 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.34 Total: -8.30 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.45 Total: -43.56 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.46 Total: -16.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.29 -7.80 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.173 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds