Wall clock time and date at job start Mon Mar 30 2020 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39873 * 126.03939 * 2 1 4 4 N 1.30845 * 108.20115 * 180.02562 * 3 2 1 5 5 N 1.40079 * 108.20737 * 359.97438 * 4 3 2 6 6 C 1.46502 * 126.03967 * 180.02562 * 5 4 3 7 7 C 1.52993 * 109.47225 * 305.02973 * 6 5 4 8 8 N 1.46896 * 109.47157 * 180.02562 * 7 6 5 9 9 C 1.48530 * 110.99709 * 287.39135 * 8 7 6 10 10 C 1.54942 * 103.23043 * 200.27905 * 9 8 7 11 11 C 1.54595 * 102.91828 * 37.41654 * 10 9 8 12 12 O 1.42901 * 110.39366 * 97.00165 * 11 10 9 13 13 C 1.50697 * 110.31131 * 219.12946 * 11 10 9 14 14 H 1.07991 * 120.00449 * 115.43864 * 13 11 10 15 15 C 1.37885 * 119.99686 * 295.71695 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.47906 * 110.99828 * 170.00065 * 8 7 6 22 22 C 1.34954 * 107.92668 * 0.26741 * 5 4 3 23 23 H 1.08997 * 109.47231 * 90.02315 * 1 2 3 24 24 H 1.09000 * 109.46771 * 210.02361 * 1 2 3 25 25 H 1.09001 * 109.46527 * 330.01991 * 1 2 3 26 26 H 1.07999 * 125.90124 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47282 * 185.02326 * 6 5 4 28 28 H 1.09002 * 109.46366 * 65.02979 * 6 5 4 29 29 H 1.08998 * 109.47519 * 59.99498 * 7 6 5 30 30 H 1.09001 * 109.47111 * 300.00037 * 7 6 5 31 31 H 1.09003 * 110.67404 * 318.71543 * 9 8 7 32 32 H 1.09003 * 110.67111 * 81.67864 * 9 8 7 33 33 H 1.08993 * 110.72402 * 279.05887 * 10 9 8 34 34 H 1.09004 * 110.72630 * 155.77077 * 10 9 8 35 35 H 0.96702 * 113.99960 * 62.84760 * 12 11 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.92231 * 26.48716 * 21 8 7 38 38 H 1.09001 * 110.08118 * 265.28041 * 21 8 7 39 39 H 1.07996 * 126.12814 * 179.73880 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5845 -0.6706 -0.0003 6 6 4.7746 -1.5248 -0.0003 7 6 5.6717 -1.1498 -1.1815 8 7 6.8648 -2.0068 -1.1818 9 6 7.7905 -1.6306 -0.0829 10 6 9.1456 -2.2259 -0.5414 11 6 9.1245 -1.9962 -2.0700 12 8 9.8428 -0.8072 -2.4049 13 6 9.7165 -3.1830 -2.7855 14 1 9.0997 -3.7833 -3.4378 15 6 11.0445 -3.5059 -2.6029 16 7 11.7958 -2.7749 -1.8086 17 14 11.7766 -4.9816 -3.4838 18 1 11.6515 -4.7941 -4.9516 19 1 13.2107 -5.1129 -3.1215 20 1 11.0494 -6.2111 -3.0780 21 6 7.6359 -1.8414 -2.4330 22 6 2.3032 -1.0942 -0.0056 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.9951 2.1578 0.0004 27 1 4.4729 -2.5684 -0.0901 28 1 5.3227 -1.3840 0.9314 29 1 5.9734 -0.1063 -1.0917 30 1 5.1235 -1.2905 -2.1131 31 1 7.8581 -0.5466 0.0092 32 1 7.4708 -2.0761 0.8591 33 1 9.1966 -3.2902 -0.3119 34 1 9.9770 -1.6909 -0.0824 35 1 10.7826 -0.8386 -2.1791 36 1 12.7301 -3.0019 -1.6805 37 1 7.4568 -0.8510 -2.8515 38 1 7.3480 -2.6066 -3.1540 39 1 1.9725 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:22 Heat of formation + Delta-G solvation = 9.119891 kcal Electronic energy + Delta-G solvation = -19971.140629 eV Core-core repulsion = 16914.436647 eV Total energy + Delta-G solvation = -3056.703982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10290 -40.20178 -37.08972 -34.86959 -34.14489 -32.59120 -31.81480 -29.99998 -29.17786 -26.96927 -25.98923 -24.24529 -22.22738 -21.57884 -21.29144 -20.87562 -19.13524 -17.90337 -16.99975 -16.90910 -16.53403 -16.02831 -15.71686 -15.50243 -15.04886 -14.46717 -14.23810 -14.11035 -13.92610 -13.86535 -13.61924 -13.34044 -13.24232 -12.88118 -12.72757 -12.64053 -12.54563 -12.33054 -12.14962 -12.04529 -11.90401 -11.39556 -11.12480 -10.61929 -10.39496 -10.13526 -9.52107 -9.20526 -8.22186 -6.36024 0.99768 1.42764 1.43374 1.51313 1.57093 1.91039 2.39339 2.92893 3.07960 3.64616 3.73801 3.87488 4.02149 4.12891 4.22103 4.26553 4.34177 4.43970 4.48446 4.53488 4.61503 4.65965 4.77484 4.82456 4.99008 5.04459 5.05281 5.18820 5.29377 5.35408 5.36937 5.57578 5.73700 5.79425 5.85691 6.00860 6.13691 6.20570 6.68024 6.80143 7.33534 7.43020 8.84045 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.048245 B = 0.003562 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.236593 B = 7858.405327 C = 8055.728777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.257 4.257 3 C 0.037 3.963 4 N -0.343 5.343 5 N -0.378 5.378 6 C 0.148 3.852 7 C 0.046 3.954 8 N -0.505 5.505 9 C 0.039 3.961 10 C -0.111 4.111 11 C 0.225 3.775 12 O -0.605 6.605 13 C -0.555 4.555 14 H 0.056 0.944 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.063 3.937 22 C 0.052 3.948 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.200 0.800 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.378 0.622 36 H 0.269 0.731 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.581 1.666 5.475 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.268 4.268 3 C -0.148 4.148 4 N -0.165 5.165 5 N -0.161 5.161 6 C 0.027 3.973 7 C -0.083 4.083 8 N -0.230 5.230 9 C -0.088 4.088 10 C -0.150 4.150 11 C 0.186 3.814 12 O -0.414 6.414 13 C -0.593 4.593 14 H 0.075 0.925 15 C -0.173 4.173 16 N -0.556 5.556 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.065 4.065 22 C -0.093 4.093 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.217 0.783 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.822 1.600 5.397 18.690 hybrid contribution 0.983 -0.063 -0.455 1.085 sum -16.839 1.537 4.942 17.617 Atomic orbital electron populations 1.20066 0.87219 1.03052 1.02054 1.20569 0.98578 0.91339 1.16355 1.24305 0.89686 1.01295 0.99537 1.77331 1.22916 0.90376 1.25839 1.48710 1.06297 1.04303 1.56783 1.21607 0.83250 0.93685 0.98795 1.22351 0.92274 0.94693 0.98982 1.64722 1.05459 1.49763 1.03036 1.23306 0.92755 0.97504 0.95261 1.22781 0.94754 0.99610 0.97866 1.19633 0.87714 0.82904 0.91168 1.86089 1.26726 1.41361 1.87262 1.21914 0.96201 1.12672 1.28490 0.92541 1.25722 0.97275 0.99234 0.95109 1.69694 1.07709 1.40588 1.37612 0.85551 0.77222 0.79651 0.78814 1.20102 1.20662 1.19525 1.22687 0.92806 0.98893 0.92110 1.23005 0.83295 1.01753 1.01274 0.91746 0.91000 0.91148 0.78300 0.85289 0.89800 0.95500 0.90905 0.95032 0.88500 0.92677 0.93261 0.77110 0.92117 0.95360 0.90289 0.77929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.37 71.24 0.74 -0.08 16 2 C -0.26 -5.01 6.10 -20.14 -0.12 -5.13 16 3 C 0.04 0.86 11.96 85.24 1.02 1.88 16 4 N -0.34 -10.12 12.42 -57.02 -0.71 -10.82 16 5 N -0.38 -9.68 3.68 -348.06 -1.28 -10.96 16 6 C 0.15 3.65 6.60 86.38 0.57 4.22 16 7 C 0.05 1.46 4.89 86.30 0.42 1.88 16 8 N -0.51 -18.66 5.24 -883.00 -4.63 -23.29 16 9 C 0.04 1.48 5.91 86.65 0.51 1.99 16 10 C -0.11 -5.17 5.50 31.80 0.17 -4.99 16 11 C 0.23 11.43 0.99 -10.66 -0.01 11.42 16 12 O -0.60 -32.86 12.92 -148.98 -1.93 -34.78 16 13 C -0.55 -30.12 8.10 25.60 0.21 -29.91 16 14 H 0.06 3.04 7.34 -2.92 -0.02 3.02 16 15 C 0.03 1.41 5.27 84.66 0.45 1.86 16 16 N -0.92 -49.40 10.89 21.45 0.23 -49.17 16 17 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 C 0.06 2.79 6.13 86.45 0.53 3.32 16 22 C 0.05 1.04 11.36 83.54 0.95 1.99 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.13 2.52 8.07 -2.39 -0.02 2.50 16 28 H 0.08 2.08 7.37 -2.39 -0.02 2.06 16 29 H 0.03 0.97 7.83 -2.39 -0.02 0.95 16 30 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 31 H 0.03 1.23 7.81 -2.39 -0.02 1.21 16 32 H 0.10 3.06 7.80 -2.39 -0.02 3.05 16 33 H 0.05 2.67 7.86 -2.39 -0.02 2.65 16 34 H 0.05 2.41 8.06 -2.39 -0.02 2.39 16 35 H 0.38 20.91 7.07 -74.06 -0.52 20.39 16 36 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.03 1.28 7.59 -2.39 -0.02 1.26 16 38 H 0.08 3.48 7.39 -2.39 -0.02 3.46 16 39 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -63.29 320.31 -0.33 -63.63 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.51 Total: 32.59 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.44 Total: -11.56 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -6.39 Total: -94.25 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.93 Total: -34.78 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -63.29 -0.33 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.746 kcal (2) G-P(sol) polarization free energy of solvation -63.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds