Wall clock time and date at job start Mon Mar 30 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35509 * 117.00148 * 2 1 4 4 N 1.32825 * 120.51583 * 359.97438 * 3 2 1 5 5 C 1.31760 * 120.72342 * 180.02562 * 4 3 2 6 6 N 1.31791 * 121.81370 * 359.73467 * 5 4 3 7 7 C 1.32492 * 120.96189 * 0.53070 * 6 5 4 8 8 C 1.38234 * 119.17612 * 359.48136 * 7 6 5 9 9 C 1.50699 * 120.82515 * 180.27780 * 8 7 6 10 10 N 1.46905 * 109.47205 * 260.00201 * 9 8 7 11 11 C 1.46894 * 111.00019 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47009 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47408 * 300.00326 * 12 11 10 14 14 C 1.53005 * 109.47240 * 60.00059 * 12 11 10 15 15 C 1.50701 * 109.47452 * 179.97438 * 12 11 10 16 16 H 1.08003 * 119.99395 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00101 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00006 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99618 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47555 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47286 * 120.00120 * 19 17 15 22 22 H 1.48499 * 109.47230 * 239.99841 * 19 17 15 23 23 H 1.09004 * 109.47247 * 299.99707 * 1 2 3 24 24 H 1.09002 * 109.47327 * 59.99671 * 1 2 3 25 25 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.09540 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.41493 * 179.76567 * 7 6 5 28 28 H 1.09000 * 109.47554 * 19.99780 * 9 8 7 29 29 H 1.09001 * 109.46833 * 140.00383 * 9 8 7 30 30 H 1.00903 * 110.99994 * 303.95675 * 10 9 8 31 31 H 1.09003 * 109.47077 * 299.99904 * 11 10 9 32 32 H 1.09000 * 109.46910 * 60.00350 * 11 10 9 33 33 H 1.08999 * 109.46844 * 59.99409 * 13 12 11 34 34 H 1.08998 * 109.47350 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.46478 * 300.00117 * 13 12 11 36 36 H 1.09003 * 109.47114 * 59.99813 * 14 12 11 37 37 H 1.08994 * 109.47452 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.46583 * 300.00225 * 14 12 11 39 39 H 0.97004 * 119.99714 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3309 2.3278 -0.0005 5 6 1.9248 3.5040 -0.0010 6 7 3.2377 3.6193 0.0041 7 6 4.0161 2.5472 -0.0004 8 6 3.4354 1.2927 0.0002 9 6 4.2854 0.0483 0.0013 10 7 4.3636 -0.4926 -1.3623 11 6 5.1858 -1.7093 -1.3996 12 6 5.2430 -2.2424 -2.8326 13 6 3.8272 -2.5685 -3.3125 14 6 5.8598 -1.1819 -3.7470 15 6 6.0869 -3.4903 -2.8711 16 1 6.5371 -3.8659 -1.9641 17 6 6.2844 -4.1525 -4.0642 18 7 5.7358 -3.6953 -5.1686 19 14 7.3299 -5.6997 -4.1117 20 1 7.8274 -6.0032 -2.7458 21 1 6.5101 -6.8362 -4.6032 22 1 8.4829 -5.4903 -5.0238 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.3192 4.3981 -0.0019 27 1 5.0911 2.6520 0.0001 28 1 5.2877 0.2931 0.3530 29 1 3.8399 -0.6953 0.6622 30 1 3.4425 -0.6673 -1.7354 31 1 6.1943 -1.4771 -1.0574 32 1 4.7461 -2.4650 -0.7486 33 1 3.2172 -1.6656 -3.2847 34 1 3.8681 -2.9486 -4.3332 35 1 3.3879 -3.3240 -2.6611 36 1 6.8684 -0.9495 -3.4052 37 1 5.9001 -1.5614 -4.7679 38 1 5.2497 -0.2790 -3.7192 39 1 5.8751 -4.1610 -6.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592368581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:10 Heat of formation + Delta-G solvation = 7.948255 kcal Electronic energy + Delta-G solvation = -20293.389573 eV Core-core repulsion = 17236.634785 eV Total energy + Delta-G solvation = -3056.754788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29835 -38.51809 -37.02066 -34.60606 -33.17407 -32.01298 -30.30890 -27.70932 -26.28417 -25.54923 -25.18537 -23.81678 -23.52014 -21.99762 -18.83787 -18.46562 -18.06715 -16.32274 -16.03253 -15.49624 -15.23491 -14.78682 -14.51517 -14.43578 -14.10142 -13.72995 -13.46881 -12.81773 -12.43730 -12.26497 -12.10985 -11.82880 -11.73564 -11.15810 -11.00190 -10.81850 -10.63474 -10.50599 -10.36953 -10.17221 -10.05468 -9.45667 -9.36628 -9.18495 -8.93935 -8.60000 -8.28497 -7.72170 -5.90358 -4.00718 0.86693 1.09649 2.82302 3.30888 3.39330 3.42699 3.70067 3.95386 4.15603 4.44733 4.67340 4.82707 5.02168 5.11610 5.14323 5.21820 5.35267 5.39233 5.47812 5.84861 5.92253 6.19629 6.32894 6.41137 6.72719 6.76392 6.89913 7.01452 7.08635 7.18131 7.38834 7.47309 7.71166 7.76867 7.83598 7.94424 7.99153 8.21744 8.35415 8.56651 9.00937 9.64321 11.10229 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032305 B = 0.004315 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.522655 B = 6486.776695 C = 6829.893889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C 0.363 3.637 4 N -0.577 5.577 5 C 0.323 3.677 6 N -0.543 5.543 7 C 0.185 3.815 8 C -0.190 4.190 9 C 0.110 3.890 10 N -0.680 5.680 11 C 0.075 3.925 12 C 0.068 3.932 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.505 4.505 16 H 0.053 0.947 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.196 0.804 27 H 0.175 0.825 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.340 0.660 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.009 0.991 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.019 0.981 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 10.288 10.373 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.199 6.199 3 C 0.176 3.824 4 N -0.307 5.307 5 C 0.034 3.966 6 N -0.261 5.261 7 C 0.022 3.978 8 C -0.195 4.195 9 C -0.020 4.020 10 N -0.313 5.313 11 C -0.053 4.053 12 C 0.068 3.932 13 C -0.189 4.189 14 C -0.177 4.177 15 C -0.544 4.544 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.213 0.787 27 H 0.192 0.808 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.159 0.841 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.101 0.899 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.411 11.105 10.003 17.150 hybrid contribution 0.112 -2.155 0.335 2.184 sum -8.299 8.950 10.337 15.995 Atomic orbital electron populations 1.22954 0.76721 1.03486 1.02514 1.86294 1.23294 1.23854 1.86482 1.20038 0.89286 0.85001 0.88092 1.68077 1.41895 0.99254 1.21507 1.24611 0.88718 0.93709 0.89529 1.68428 1.06490 1.33879 1.17289 1.23035 1.00831 0.85864 0.88046 1.20899 0.91664 0.99006 1.07972 1.20601 0.97694 0.91245 0.92451 1.60753 1.19450 1.33466 1.17596 1.22175 0.95453 0.87406 1.00225 1.18104 0.93189 0.93505 0.88437 1.21823 0.96595 0.96663 1.03818 1.21638 0.97123 0.96172 1.02720 1.21142 1.30319 1.08956 0.93973 0.92908 1.24886 0.95732 0.97260 0.95723 1.69848 1.44294 1.39437 0.98776 0.86604 0.80298 0.83495 0.77951 1.19942 1.21205 1.21117 0.92224 0.91914 0.88180 0.78730 0.80805 0.90068 0.94254 0.84115 0.92372 0.96688 0.97214 0.89860 0.96188 0.96231 0.90766 0.96236 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.41 101.05 1.05 1.44 16 2 O -0.30 -4.07 9.86 -18.22 -0.18 -4.25 16 3 C 0.36 5.11 7.50 -16.70 -0.13 4.98 16 4 N -0.58 -7.49 9.39 -14.64 -0.14 -7.63 16 5 C 0.32 3.72 12.28 -92.19 -1.13 2.59 16 6 N -0.54 -6.86 10.43 -14.65 -0.15 -7.01 16 7 C 0.18 2.31 10.96 -17.27 -0.19 2.12 16 8 C -0.19 -2.62 5.44 -104.20 -0.57 -3.19 16 9 C 0.11 1.62 5.56 -4.97 -0.03 1.60 16 10 N -0.68 -12.26 5.70 -115.06 -0.66 -12.92 16 11 C 0.08 1.57 4.59 -3.83 -0.02 1.55 16 12 C 0.07 1.65 0.57 -155.65 -0.09 1.56 16 13 C -0.13 -3.14 7.92 37.16 0.29 -2.84 16 14 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 15 C -0.51 -13.56 8.01 -34.44 -0.28 -13.84 16 16 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 17 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.88 -24.55 9.35 55.43 0.52 -24.03 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 24 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 30 H 0.34 6.39 6.76 -39.29 -0.27 6.12 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 38 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -29.38 320.24 -7.48 -36.85 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.81 Total: 3.08 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.87 Total: -4.97 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.43 Total: -51.59 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.18 Total: -4.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.38 -7.48 -36.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.801 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds