Wall clock time and date at job start Mon Mar 30 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35509 * 117.00148 * 2 1 4 4 N 1.32825 * 120.51583 * 359.97438 * 3 2 1 5 5 C 1.31760 * 120.72342 * 180.02562 * 4 3 2 6 6 N 1.31791 * 121.81370 * 359.73467 * 5 4 3 7 7 C 1.32492 * 120.96189 * 0.53070 * 6 5 4 8 8 C 1.38234 * 119.17612 * 359.48136 * 7 6 5 9 9 C 1.50699 * 120.82515 * 180.27780 * 8 7 6 10 10 N 1.46905 * 109.47205 * 260.00201 * 9 8 7 11 11 C 1.46894 * 111.00019 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47009 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47408 * 300.00326 * 12 11 10 14 14 C 1.53005 * 109.47240 * 60.00059 * 12 11 10 15 15 C 1.50701 * 109.47452 * 179.97438 * 12 11 10 16 16 H 1.08003 * 119.99395 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00101 * 180.02562 * 15 12 11 18 18 N 1.31509 * 120.00006 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99618 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47555 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47286 * 120.00120 * 19 17 15 22 22 H 1.48499 * 109.47230 * 239.99841 * 19 17 15 23 23 H 1.09004 * 109.47247 * 299.99707 * 1 2 3 24 24 H 1.09002 * 109.47327 * 59.99671 * 1 2 3 25 25 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.09540 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.41493 * 179.76567 * 7 6 5 28 28 H 1.09000 * 109.47554 * 19.99780 * 9 8 7 29 29 H 1.09001 * 109.46833 * 140.00383 * 9 8 7 30 30 H 1.00903 * 110.99994 * 303.95675 * 10 9 8 31 31 H 1.09003 * 109.47077 * 299.99904 * 11 10 9 32 32 H 1.09000 * 109.46910 * 60.00350 * 11 10 9 33 33 H 1.08999 * 109.46844 * 59.99409 * 13 12 11 34 34 H 1.08998 * 109.47350 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.46478 * 300.00117 * 13 12 11 36 36 H 1.09003 * 109.47114 * 59.99813 * 14 12 11 37 37 H 1.08994 * 109.47452 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.46583 * 300.00225 * 14 12 11 39 39 H 0.97004 * 119.99714 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3309 2.3278 -0.0005 5 6 1.9248 3.5040 -0.0010 6 7 3.2377 3.6193 0.0041 7 6 4.0161 2.5472 -0.0004 8 6 3.4354 1.2927 0.0002 9 6 4.2854 0.0483 0.0013 10 7 4.3636 -0.4926 -1.3623 11 6 5.1858 -1.7093 -1.3996 12 6 5.2430 -2.2424 -2.8326 13 6 3.8272 -2.5685 -3.3125 14 6 5.8598 -1.1819 -3.7470 15 6 6.0869 -3.4903 -2.8711 16 1 6.5371 -3.8659 -1.9641 17 6 6.2844 -4.1525 -4.0642 18 7 5.7358 -3.6953 -5.1686 19 14 7.3299 -5.6997 -4.1117 20 1 7.8274 -6.0032 -2.7458 21 1 6.5101 -6.8362 -4.6032 22 1 8.4829 -5.4903 -5.0238 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.3192 4.3981 -0.0019 27 1 5.0911 2.6520 0.0001 28 1 5.2877 0.2931 0.3530 29 1 3.8399 -0.6953 0.6622 30 1 3.4425 -0.6673 -1.7354 31 1 6.1943 -1.4771 -1.0574 32 1 4.7461 -2.4650 -0.7486 33 1 3.2172 -1.6656 -3.2847 34 1 3.8681 -2.9486 -4.3332 35 1 3.3879 -3.3240 -2.6611 36 1 6.8684 -0.9495 -3.4052 37 1 5.9001 -1.5614 -4.7679 38 1 5.2497 -0.2790 -3.7192 39 1 5.8751 -4.1610 -6.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592368581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:09 Heat of formation + Delta-G solvation = -11.405774 kcal Electronic energy + Delta-G solvation = -20294.228826 eV Core-core repulsion = 17236.634785 eV Total energy + Delta-G solvation = -3057.594042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25505 -39.46528 -38.68475 -36.10387 -34.20611 -33.55983 -31.87804 -28.55987 -27.55701 -27.50267 -27.20843 -25.05301 -24.72160 -23.16389 -20.33851 -19.75928 -19.03467 -17.93636 -17.26441 -17.08166 -16.38949 -16.10262 -15.71490 -15.63459 -15.42679 -15.03832 -14.51623 -14.32539 -14.19612 -13.90925 -13.40267 -13.05055 -12.96042 -12.80770 -12.63916 -12.50813 -12.48555 -12.11770 -12.06212 -11.74848 -11.35119 -11.29829 -10.94550 -10.58823 -10.40182 -10.33713 -10.02558 -9.17151 -7.95254 -6.12091 -0.08702 0.11785 1.42579 1.46050 1.55360 1.91912 2.47852 2.73804 3.06601 3.27210 3.30046 3.54264 3.75720 3.86788 4.14090 4.36755 4.37646 4.51998 4.60478 4.63266 4.70019 4.76262 4.87903 4.88315 5.04295 5.17906 5.28909 5.29429 5.43881 5.54410 5.71541 5.77240 5.82119 6.04383 6.17705 6.23644 6.33683 6.47943 6.59190 6.97562 7.05516 7.55686 9.03247 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032305 B = 0.004315 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.522655 B = 6486.776695 C = 6829.893889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.314 6.314 3 C 0.352 3.648 4 N -0.585 5.585 5 C 0.324 3.676 6 N -0.554 5.554 7 C 0.188 3.812 8 C -0.207 4.207 9 C 0.117 3.883 10 N -0.681 5.681 11 C 0.090 3.910 12 C 0.058 3.942 13 C -0.119 4.119 14 C -0.105 4.105 15 C -0.523 4.523 16 H 0.047 0.953 17 C 0.021 3.979 18 N -0.905 5.905 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.231 0.769 27 H 0.195 0.805 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.334 0.666 31 H 0.058 0.942 32 H 0.010 0.990 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.015 0.985 37 H 0.046 0.954 38 H 0.030 0.970 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 11.061 11.321 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.165 3.835 4 N -0.315 5.315 5 C 0.037 3.963 6 N -0.272 5.272 7 C 0.026 3.974 8 C -0.212 4.212 9 C -0.013 4.013 10 N -0.313 5.313 11 C -0.039 4.039 12 C 0.058 3.942 13 C -0.177 4.177 14 C -0.162 4.162 15 C -0.562 4.562 16 H 0.066 0.934 17 C -0.178 4.178 18 N -0.544 5.544 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.247 0.753 27 H 0.212 0.788 28 H 0.115 0.885 29 H 0.055 0.945 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.601 11.885 10.964 18.315 hybrid contribution 0.103 -2.324 0.056 2.327 sum -8.498 9.560 11.020 16.884 Atomic orbital electron populations 1.23154 0.75179 1.04857 1.02791 1.86269 1.24971 1.24101 1.86414 1.20260 0.89668 0.85437 0.88142 1.68159 1.41933 0.99400 1.22006 1.25382 0.88866 0.94393 0.87698 1.68524 1.07018 1.33787 1.17864 1.23400 1.01898 0.85409 0.86717 1.20839 0.91594 0.98956 1.09861 1.20571 0.98859 0.91503 0.90361 1.60687 1.18776 1.31781 1.20020 1.21844 0.96027 0.88357 0.97632 1.18163 0.92723 0.92776 0.90563 1.21646 0.96945 0.97184 1.01884 1.21460 0.97138 0.96547 1.01104 1.21458 1.30767 1.10116 0.93822 0.93435 1.25544 0.96833 0.99820 0.95554 1.69983 1.45063 1.40348 0.99040 0.85708 0.78800 0.80341 0.77936 1.19484 1.21047 1.20977 0.91443 0.92078 0.86343 0.75291 0.78805 0.88529 0.94544 0.84713 0.92344 0.97192 0.95497 0.92624 0.96425 0.96609 0.93467 0.95123 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.41 113.37 1.18 1.84 16 2 O -0.31 -8.32 9.86 -88.11 -0.87 -9.19 16 3 C 0.35 9.45 7.50 84.82 0.64 10.08 16 4 N -0.58 -14.17 9.39 -312.90 -2.94 -17.10 16 5 C 0.32 6.72 12.28 180.90 2.22 8.94 16 6 N -0.55 -12.76 10.43 -200.25 -2.09 -14.85 16 7 C 0.19 4.34 10.96 84.59 0.93 5.26 16 8 C -0.21 -5.39 5.44 -19.59 -0.11 -5.50 16 9 C 0.12 3.26 5.56 85.56 0.48 3.74 16 10 N -0.68 -23.69 5.70 -517.93 -2.95 -26.65 16 11 C 0.09 3.66 4.59 86.30 0.40 4.05 16 12 C 0.06 2.81 0.57 -52.92 -0.03 2.78 16 13 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 14 C -0.10 -5.11 8.09 71.98 0.58 -4.53 16 15 C -0.52 -28.04 8.01 25.60 0.21 -27.83 16 16 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 17 C 0.02 1.15 5.15 84.65 0.44 1.59 16 18 N -0.90 -50.66 9.35 21.45 0.20 -50.46 16 19 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H 0.07 1.16 8.12 -2.38 -0.02 1.14 16 24 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 25 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.10 2.37 8.04 -2.39 -0.02 2.35 16 29 H 0.04 1.05 7.94 -2.39 -0.02 1.03 16 30 H 0.33 12.23 6.76 -89.69 -0.61 11.62 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.03 1.15 6.57 -2.39 -0.02 1.13 16 34 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.01 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.05 2.55 6.07 -2.39 -0.01 2.54 16 38 H 0.03 1.38 7.60 -2.39 -0.02 1.36 16 39 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -61.61 320.24 1.31 -60.30 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.44 Total: 17.40 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 7.49 Total: -4.67 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -7.78 Total: -109.06 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.87 Total: -9.19 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -61.61 1.31 -60.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592368581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.897 kcal (2) G-P(sol) polarization free energy of solvation -61.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds