Wall clock time and date at job start Mon Mar 30 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 110.01845 * 326.73005 * 3 2 1 5 5 N 1.46496 * 109.46851 * 59.29889 * 4 3 2 6 6 C 1.34777 * 119.99614 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00178 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.73002 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47325 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99792 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00025 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00107 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47169 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47241 * 120.00108 * 15 13 11 18 18 H 1.48501 * 109.47173 * 240.00025 * 15 13 11 19 19 C 1.54268 * 110.02979 * 88.12520 * 3 2 1 20 20 C 1.54966 * 104.16174 * 95.75260 * 19 3 2 21 21 C 1.54892 * 102.77622 * 37.88391 * 20 19 3 22 22 C 1.53884 * 110.02957 * 205.33982 * 3 2 1 23 23 H 1.09000 * 109.46986 * 299.29937 * 4 3 2 24 24 H 1.09002 * 109.46857 * 179.29803 * 4 3 2 25 25 H 0.96996 * 120.00499 * 0.02562 * 5 4 3 26 26 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 27 27 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 28 28 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 29 29 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 30 30 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 31 31 H 0.97000 * 120.00440 * 179.97438 * 14 13 11 32 32 H 1.09001 * 110.48396 * 214.39856 * 19 3 2 33 33 H 1.08996 * 110.48705 * 337.04213 * 19 3 2 34 34 H 1.08999 * 110.71668 * 279.57619 * 20 19 3 35 35 H 1.08991 * 110.76587 * 156.21993 * 20 19 3 36 36 H 1.08997 * 110.48732 * 203.40531 * 21 20 19 37 37 H 1.09002 * 110.48548 * 80.76753 * 21 20 19 38 38 H 1.08997 * 110.03260 * 359.95266 * 22 3 2 39 39 H 1.08991 * 110.03161 * 121.38420 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1323 -1.2010 0.7886 5 7 2.6374 -2.4382 0.1798 6 6 2.9738 -3.6311 0.7090 7 8 3.6877 -3.6805 1.6921 8 7 2.5190 -4.7694 0.1486 9 6 2.8895 -6.0663 0.7204 10 6 2.2463 -7.1872 -0.0986 11 6 2.6269 -8.5213 0.4899 12 1 3.2642 -8.5653 1.3608 13 6 2.1615 -9.6857 -0.0833 14 7 1.3850 -9.6321 -1.1434 15 14 2.6338 -11.3394 0.6458 16 1 3.5096 -11.1279 1.8262 17 1 1.4072 -12.0652 1.0625 18 1 3.3608 -12.1397 -0.3722 19 6 3.1364 -0.0465 -1.4486 20 6 3.4071 1.4378 -1.8020 21 6 3.9654 2.0095 -0.4751 22 6 3.1345 1.3076 0.6188 23 1 2.7841 -1.1389 1.8196 24 1 4.2222 -1.1987 0.7724 25 1 2.0683 -2.3988 -0.6047 26 1 1.9498 -4.7299 -0.6359 27 1 3.9737 -6.1768 0.6981 28 1 2.5397 -6.1222 1.7513 29 1 1.1620 -7.0769 -0.0767 30 1 2.5964 -7.1311 -1.1292 31 1 1.0578 -10.4513 -1.5469 32 1 4.0589 -0.6249 -1.4995 33 1 2.3840 -0.4672 -2.1156 34 1 2.4822 1.9426 -2.0811 35 1 4.1471 1.5167 -2.5983 36 1 3.8180 3.0886 -0.4326 37 1 5.0220 1.7635 -0.3684 38 1 2.3000 1.9416 0.9182 39 1 3.7635 1.0856 1.4808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593392737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:02 Heat of formation + Delta-G solvation = -29.394999 kcal Electronic energy + Delta-G solvation = -19350.521139 eV Core-core repulsion = 16292.147026 eV Total energy + Delta-G solvation = -3058.374113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28200 -39.03681 -36.09646 -35.06840 -34.30643 -32.82078 -30.76718 -29.39231 -29.13230 -25.48259 -24.12857 -22.22236 -21.40339 -20.96694 -20.42168 -18.25693 -17.49916 -16.41233 -16.22469 -15.39407 -15.34152 -14.91612 -14.48337 -14.24834 -14.02191 -13.89916 -13.73457 -13.40871 -13.19725 -12.97931 -12.33665 -12.27944 -11.75115 -11.63352 -11.56309 -11.38318 -11.22299 -11.16886 -11.03855 -11.01600 -10.60711 -10.31839 -9.97084 -9.55734 -9.23859 -9.10310 -8.48537 -8.25753 -6.08237 -4.10812 2.44043 2.48399 2.97680 3.29408 3.37039 3.42310 3.44214 3.56956 4.05411 4.06701 4.28326 4.40710 4.67433 4.71074 4.87842 4.92949 5.04764 5.17996 5.28999 5.33126 5.45222 5.47403 5.52326 5.61066 5.66109 5.73916 5.87822 6.28663 6.40610 6.48124 6.78361 6.99259 7.15669 7.29004 7.57612 7.64434 7.91045 8.26037 8.40183 8.92799 8.98006 9.53998 11.03490 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.003045 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.339558 B = 9192.610384 C = 9340.180761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.212 3.788 3 C 0.022 3.978 4 C 0.156 3.844 5 N -0.756 5.756 6 C 0.700 3.300 7 O -0.596 6.596 8 N -0.738 5.738 9 C 0.140 3.860 10 C 0.012 3.988 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.110 4.110 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.393 0.607 26 H 0.393 0.607 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 24.021 -1.930 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.106 4.106 3 C 0.018 3.982 4 C 0.030 3.970 5 N -0.414 5.414 6 C 0.400 3.600 7 O -0.475 6.475 8 N -0.391 5.391 9 C 0.017 3.983 10 C -0.025 4.025 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.149 4.149 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.227 0.773 26 H 0.226 0.774 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.940 23.815 -1.102 24.164 hybrid contribution -0.108 -0.969 -0.443 1.071 sum 3.832 22.846 -1.545 23.217 Atomic orbital electron populations 1.81261 1.12558 1.08010 1.08003 1.28916 0.94659 0.93498 0.93569 1.19278 0.81903 0.97964 0.99054 1.21262 0.99697 0.79879 0.96165 1.45126 1.56905 1.04726 1.34621 1.16007 0.80678 0.80322 0.82980 1.90895 1.42387 1.86459 1.27746 1.45545 1.54278 1.05667 1.33611 1.21601 0.99486 0.79503 0.97667 1.19334 0.96273 0.91556 0.95372 1.21092 1.30845 0.90383 1.13521 0.92142 1.25001 0.94954 0.99469 0.94935 1.69966 1.34059 1.28042 1.21286 0.86455 0.78328 0.83576 0.79202 1.19550 1.20963 1.20951 1.22585 1.02294 0.98272 0.92094 1.22561 1.01352 0.94728 0.97786 1.22386 0.99888 1.00013 0.93807 1.22222 1.00415 0.92965 0.99264 0.90861 0.89366 0.77332 0.77397 0.92692 0.92755 0.96003 0.95954 0.92923 0.88814 0.90647 0.91369 0.90562 0.90995 0.90590 0.90647 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.57 18.54 42.15 0.78 -4.79 16 2 C 0.21 2.15 12.74 -20.76 -0.26 1.88 16 3 C 0.02 0.16 0.60 -156.17 -0.09 0.06 16 4 C 0.16 1.47 4.18 -4.04 -0.02 1.45 16 5 N -0.76 -9.09 5.09 -65.23 -0.33 -9.42 16 6 C 0.70 11.93 8.57 -86.91 -0.74 11.19 16 7 O -0.60 -12.40 16.34 5.29 0.09 -12.31 16 8 N -0.74 -13.05 5.56 -65.22 -0.36 -13.41 16 9 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.11 -0.66 5.31 -25.03 -0.13 -0.79 16 20 C -0.13 -0.59 6.91 -24.70 -0.17 -0.76 16 21 C -0.12 -0.50 6.83 -25.07 -0.17 -0.67 16 22 C -0.11 -0.56 6.09 -25.61 -0.16 -0.72 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 25 H 0.39 4.02 7.71 -40.82 -0.31 3.70 16 26 H 0.39 6.06 8.49 -40.82 -0.35 5.72 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.09 0.51 7.84 -51.93 -0.41 0.11 16 33 H 0.07 0.46 7.82 -51.93 -0.41 0.05 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.41 7.66 -51.93 -0.40 0.01 16 39 H 0.09 0.37 7.67 -51.93 -0.40 -0.02 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -33.83 330.81 -7.49 -41.32 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.04 Total: 1.18 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.33 Total: 1.53 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.82 Total: -53.16 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.83 -7.49 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593392737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.929 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds