Wall clock time and date at job start Mon Mar 30 2020 04:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 110.01845 * 326.73005 * 3 2 1 5 5 N 1.46496 * 109.46851 * 59.29889 * 4 3 2 6 6 C 1.34777 * 119.99614 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00178 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.73002 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47325 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99792 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00025 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00107 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47169 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47241 * 120.00108 * 15 13 11 18 18 H 1.48501 * 109.47173 * 240.00025 * 15 13 11 19 19 C 1.54268 * 110.02979 * 88.12520 * 3 2 1 20 20 C 1.54966 * 104.16174 * 95.75260 * 19 3 2 21 21 C 1.54892 * 102.77622 * 37.88391 * 20 19 3 22 22 C 1.53884 * 110.02957 * 205.33982 * 3 2 1 23 23 H 1.09000 * 109.46986 * 299.29937 * 4 3 2 24 24 H 1.09002 * 109.46857 * 179.29803 * 4 3 2 25 25 H 0.96996 * 120.00499 * 0.02562 * 5 4 3 26 26 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 27 27 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 28 28 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 29 29 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 30 30 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 31 31 H 0.97000 * 120.00440 * 179.97438 * 14 13 11 32 32 H 1.09001 * 110.48396 * 214.39856 * 19 3 2 33 33 H 1.08996 * 110.48705 * 337.04213 * 19 3 2 34 34 H 1.08999 * 110.71668 * 279.57619 * 20 19 3 35 35 H 1.08991 * 110.76587 * 156.21993 * 20 19 3 36 36 H 1.08997 * 110.48732 * 203.40531 * 21 20 19 37 37 H 1.09002 * 110.48548 * 80.76753 * 21 20 19 38 38 H 1.08997 * 110.03260 * 359.95266 * 22 3 2 39 39 H 1.08991 * 110.03161 * 121.38420 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1323 -1.2010 0.7886 5 7 2.6374 -2.4382 0.1798 6 6 2.9738 -3.6311 0.7090 7 8 3.6877 -3.6805 1.6921 8 7 2.5190 -4.7694 0.1486 9 6 2.8895 -6.0663 0.7204 10 6 2.2463 -7.1872 -0.0986 11 6 2.6269 -8.5213 0.4899 12 1 3.2642 -8.5653 1.3608 13 6 2.1615 -9.6857 -0.0833 14 7 1.3850 -9.6321 -1.1434 15 14 2.6338 -11.3394 0.6458 16 1 3.5096 -11.1279 1.8262 17 1 1.4072 -12.0652 1.0625 18 1 3.3608 -12.1397 -0.3722 19 6 3.1364 -0.0465 -1.4486 20 6 3.4071 1.4378 -1.8020 21 6 3.9654 2.0095 -0.4751 22 6 3.1345 1.3076 0.6188 23 1 2.7841 -1.1389 1.8196 24 1 4.2222 -1.1987 0.7724 25 1 2.0683 -2.3988 -0.6047 26 1 1.9498 -4.7299 -0.6359 27 1 3.9737 -6.1768 0.6981 28 1 2.5397 -6.1222 1.7513 29 1 1.1620 -7.0769 -0.0767 30 1 2.5964 -7.1311 -1.1292 31 1 1.0578 -10.4513 -1.5469 32 1 4.0589 -0.6249 -1.4995 33 1 2.3840 -0.4672 -2.1156 34 1 2.4822 1.9426 -2.0811 35 1 4.1471 1.5167 -2.5983 36 1 3.8180 3.0886 -0.4326 37 1 5.0220 1.7635 -0.3684 38 1 2.3000 1.9416 0.9182 39 1 3.7635 1.0856 1.4808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593392737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:01 Heat of formation + Delta-G solvation = -52.474270 kcal Electronic energy + Delta-G solvation = -19351.521931 eV Core-core repulsion = 16292.147026 eV Total energy + Delta-G solvation = -3059.374905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27980 -40.04695 -36.93575 -36.66169 -35.49269 -34.78605 -31.94861 -30.69377 -29.70534 -26.96801 -25.46645 -22.92450 -22.82761 -22.13038 -21.36287 -19.53705 -18.41563 -18.27662 -17.20136 -16.70673 -16.48781 -16.23929 -15.68155 -15.33028 -15.18054 -14.89811 -14.79192 -14.38712 -14.36415 -14.26920 -13.76246 -13.24491 -13.19543 -12.93021 -12.50575 -12.34979 -12.23746 -12.08308 -11.95255 -11.87965 -11.82589 -11.66348 -11.48035 -11.35334 -11.17866 -10.60785 -10.35175 -9.73139 -8.23633 -6.33852 1.41781 1.42585 1.55622 1.60499 1.65316 1.80239 2.17907 2.41901 2.72294 3.11384 3.33001 3.49618 3.59659 3.72471 4.31670 4.35677 4.48208 4.49366 4.54202 4.59921 4.72081 4.73852 4.85550 4.88550 4.96385 5.12268 5.21023 5.29721 5.32110 5.35531 5.44908 5.52351 5.55179 5.60267 5.79116 5.97865 6.17728 6.46996 6.79964 7.07791 7.35654 7.58691 8.88562 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.003045 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.339558 B = 9192.610384 C = 9340.180761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.234 3.766 3 C 0.031 3.969 4 C 0.152 3.848 5 N -0.738 5.738 6 C 0.701 3.299 7 O -0.633 6.633 8 N -0.736 5.736 9 C 0.161 3.839 10 C 0.023 3.977 11 C -0.544 4.544 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.966 3.034 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.276 1.276 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.108 4.108 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.404 0.596 26 H 0.405 0.595 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.004 0.996 30 H 0.010 0.990 31 H 0.265 0.735 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 24.842 -1.975 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.084 4.084 3 C 0.027 3.973 4 C 0.027 3.973 5 N -0.395 5.395 6 C 0.401 3.599 7 O -0.515 6.515 8 N -0.390 5.390 9 C 0.037 3.963 10 C -0.015 4.015 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.790 3.210 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.156 4.156 22 C -0.147 4.147 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.239 0.761 26 H 0.240 0.760 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.162 24.693 -1.178 25.254 hybrid contribution -0.496 -1.151 -0.448 1.331 sum 4.666 23.542 -1.626 24.055 Atomic orbital electron populations 1.81283 1.14335 1.09846 1.09938 1.29483 0.95165 0.91853 0.91864 1.19434 0.79816 0.97982 1.00049 1.21495 1.00614 0.79191 0.95960 1.45017 1.56067 1.03991 1.34425 1.16076 0.80252 0.81088 0.82526 1.90871 1.44073 1.87106 1.29415 1.45259 1.54787 1.04893 1.34089 1.21070 0.98519 0.80332 0.96412 1.19137 0.95214 0.92116 0.95011 1.21505 1.31049 0.91930 1.13788 0.92150 1.25886 0.94769 1.03382 0.95266 1.70069 1.34952 1.29278 1.22463 0.85381 0.78200 0.78744 0.78635 1.18817 1.20400 1.20154 1.22640 1.02429 0.99451 0.90740 1.22564 1.01488 0.93626 0.98569 1.22397 1.00201 1.00352 0.92668 1.22281 1.00696 0.91635 1.00113 0.91692 0.87874 0.76059 0.76045 0.93339 0.93967 0.97715 0.97184 0.92591 0.87916 0.91020 0.92010 0.89393 0.90152 0.89430 0.90901 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.54 18.54 20.01 0.37 -12.16 16 2 C 0.23 4.54 12.74 89.44 1.14 5.68 16 3 C 0.03 0.38 0.60 -53.26 -0.03 0.35 16 4 C 0.15 2.61 4.18 86.38 0.36 2.97 16 5 N -0.74 -16.78 5.09 -478.54 -2.44 -19.21 16 6 C 0.70 23.36 8.57 179.05 1.53 24.90 16 7 O -0.63 -26.01 16.34 -3.99 -0.07 -26.08 16 8 N -0.74 -25.83 5.56 -478.52 -2.66 -28.49 16 9 C 0.16 6.99 5.61 86.38 0.48 7.48 16 10 C 0.02 1.16 5.09 29.85 0.15 1.31 16 11 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.01 0.31 5.46 84.65 0.46 0.77 16 14 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 15 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 C -0.11 -1.06 5.31 31.70 0.17 -0.89 16 20 C -0.12 -0.86 6.91 31.91 0.22 -0.64 16 21 C -0.12 -0.62 6.83 31.67 0.22 -0.41 16 22 C -0.11 -0.86 6.09 31.32 0.19 -0.67 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.10 1.56 8.13 -2.39 -0.02 1.54 16 25 H 0.40 7.68 7.71 -92.71 -0.71 6.97 16 26 H 0.40 12.31 8.49 -92.71 -0.79 11.52 16 27 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.10 0.83 7.84 -2.39 -0.02 0.81 16 33 H 0.07 0.75 7.82 -2.39 -0.02 0.73 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.09 0.30 8.14 -2.39 -0.02 0.29 16 38 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 39 H 0.10 0.58 7.67 -2.39 -0.02 0.56 16 Total: -1.00 -72.67 330.81 2.21 -70.46 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -0.44 Total: 13.60 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.13 Total: 10.52 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.44 Total: -114.35 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.07 Total: -26.08 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.67 2.21 -70.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593392737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.990 kcal (2) G-P(sol) polarization free energy of solvation -72.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds