Wall clock time and date at job start Mon Mar 30 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 C 1.35040 * 124.88474 * 74.99959 * 5 2 1 7 7 C 1.35360 * 107.23471 * 179.97438 * 6 5 2 8 8 C 1.41507 * 105.50184 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51938 * 180.02562 * 8 7 6 10 10 O 1.21573 * 120.00151 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99998 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99980 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47294 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47373 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99956 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99938 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99934 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00126 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47474 * 89.99685 * 18 16 14 20 20 H 1.48501 * 109.47296 * 209.99945 * 18 16 14 21 21 H 1.48507 * 109.46977 * 329.99753 * 18 16 14 22 22 N 1.28471 * 124.89112 * 254.69820 * 5 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.08000 * 126.38224 * 359.97438 * 6 5 2 33 33 H 1.07994 * 127.25235 * 180.02562 * 7 6 5 34 34 H 0.96998 * 120.00015 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47324 * 300.00101 * 12 11 9 36 36 H 1.08999 * 109.47213 * 60.00171 * 12 11 9 37 37 H 1.09001 * 109.46874 * 300.00201 * 13 12 11 38 38 H 1.08999 * 109.46994 * 59.99861 * 13 12 11 39 39 H 0.96995 * 120.00448 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 2.0055 -0.1759 -2.4445 7 6 2.5361 -1.1094 -3.2687 8 6 2.8632 -2.2063 -2.4368 9 6 3.4737 -3.4818 -2.8635 10 8 3.7439 -3.6646 -4.0347 11 7 3.7313 -4.4431 -1.9546 12 6 4.3363 -5.7083 -2.3779 13 6 4.5207 -6.6178 -1.1614 14 6 5.1436 -7.9191 -1.5968 15 1 5.3836 -8.0815 -2.6373 16 6 5.4071 -8.9024 -0.6669 17 7 5.9503 -10.0382 -1.0470 18 14 4.9914 -8.6219 1.1324 19 1 3.6068 -9.0878 1.3991 20 1 5.9419 -9.3810 1.9843 21 1 5.0951 -7.1736 1.4444 22 7 2.5255 -1.8709 -1.2076 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 1.6399 0.7989 -2.7318 33 1 2.6796 -1.0331 -4.3363 34 1 3.5161 -4.2972 -1.0201 35 1 3.6851 -6.1982 -3.1019 36 1 5.3059 -5.5123 -2.8357 37 1 5.1717 -6.1282 -0.4371 38 1 3.5509 -6.8139 -0.7041 39 1 6.1354 -10.7302 -0.3929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594003997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:39 Heat of formation + Delta-G solvation = 4.120772 kcal Electronic energy + Delta-G solvation = -19684.783579 eV Core-core repulsion = 16627.862819 eV Total energy + Delta-G solvation = -3056.920760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.72229 -40.47006 -37.75170 -36.67745 -34.82439 -32.51275 -31.89708 -31.26782 -28.36183 -28.28441 -27.18090 -24.80785 -22.92515 -22.49722 -21.37289 -20.42575 -19.00040 -18.72961 -17.36933 -17.11312 -16.68311 -16.34140 -16.22881 -15.27768 -15.20152 -15.05105 -14.65930 -14.61793 -14.54006 -13.98497 -13.38079 -13.26947 -13.20173 -13.08330 -13.06057 -12.72587 -12.29113 -12.22054 -12.17812 -12.13840 -11.78978 -11.73965 -11.54963 -11.20161 -10.80061 -10.31379 -10.11630 -9.92983 -8.31214 -6.38322 0.54624 1.21841 1.37469 1.39843 1.47383 1.51601 2.24050 2.35707 2.37615 3.03426 3.26816 3.70785 3.73765 3.85301 3.93119 4.17391 4.36471 4.39314 4.61447 4.62420 4.68919 4.71672 4.72449 4.78522 4.78958 4.84104 4.86242 5.09624 5.12436 5.24779 5.25623 5.34647 5.36710 5.42659 5.61073 5.96079 6.20794 6.47541 6.68645 6.95407 7.17263 7.26193 8.85546 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.004092 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.904796 B = 6840.469227 C = 7806.710166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.155 4.155 4 C -0.150 4.150 5 N -0.266 5.266 6 C 0.001 3.999 7 C -0.201 4.201 8 C -0.049 4.049 9 C 0.594 3.406 10 O -0.580 6.580 11 N -0.706 5.706 12 C 0.144 3.856 13 C -0.012 4.012 14 C -0.539 4.539 15 H 0.032 0.968 16 C 0.007 3.993 17 N -0.949 5.949 18 Si 0.957 3.043 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.242 1.242 22 N -0.269 5.269 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.224 0.776 33 H 0.162 0.838 34 H 0.412 0.588 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 29.518 7.569 33.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.213 4.213 4 C -0.207 4.207 5 N -0.056 5.056 6 C -0.141 4.141 7 C -0.229 4.229 8 C -0.207 4.207 9 C 0.381 3.619 10 O -0.458 6.458 11 N -0.356 5.356 12 C 0.020 3.980 13 C -0.049 4.049 14 C -0.577 4.577 15 H 0.051 0.949 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.165 1.165 22 N -0.106 5.106 23 H 0.095 0.905 24 H 0.127 0.873 25 H 0.067 0.933 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.240 0.760 33 H 0.180 0.820 34 H 0.248 0.752 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.491 28.856 8.009 32.845 hybrid contribution 0.263 -0.593 -0.279 0.706 sum -13.228 28.263 7.730 32.148 Atomic orbital electron populations 1.22264 0.90695 1.03050 1.05352 1.21518 0.96161 0.93342 0.81330 1.22266 1.01862 0.91324 1.05844 1.22010 1.01605 1.01105 0.95999 1.46334 1.40792 1.09440 1.09016 1.23263 1.05058 1.02330 0.83489 1.21971 1.06521 0.92784 1.01611 1.21745 1.10075 0.97231 0.91659 1.17382 0.77341 0.82383 0.84843 1.90735 1.55217 1.80985 1.18906 1.45968 1.62130 1.15789 1.11751 1.21135 0.96566 0.82304 0.97950 1.19640 0.97323 0.93561 0.94422 1.21224 1.41353 0.99910 0.95236 0.94943 1.26031 0.94051 0.94227 1.04733 1.70062 1.44758 1.07230 1.36796 0.85568 0.78597 0.79986 0.77939 1.18908 1.20837 1.16532 1.73425 1.14248 1.00912 1.22013 0.90469 0.87294 0.93326 0.87248 0.92473 0.89708 0.92525 0.92806 0.87692 0.75999 0.82044 0.75198 0.93228 0.93234 0.94755 0.94878 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.70 71.98 0.63 -0.59 16 2 C 0.16 1.76 1.21 3.60 0.00 1.76 16 3 C -0.16 -0.85 8.27 71.98 0.60 -0.25 16 4 C -0.15 -1.92 8.00 71.98 0.58 -1.34 16 5 N -0.27 -5.11 3.16 -307.74 -0.97 -6.08 16 6 C 0.00 0.02 10.52 83.53 0.88 0.90 16 7 C -0.20 -5.10 10.81 22.41 0.24 -4.86 16 8 C -0.05 -1.57 7.13 42.46 0.30 -1.26 16 9 C 0.59 23.36 7.82 86.74 0.68 24.04 16 10 O -0.58 -26.64 16.93 -3.95 -0.07 -26.71 16 11 N -0.71 -27.14 5.55 -466.10 -2.59 -29.73 16 12 C 0.14 6.46 5.61 86.38 0.48 6.95 16 13 C -0.01 -0.56 4.16 29.85 0.12 -0.44 16 14 C -0.54 -31.91 9.66 25.60 0.25 -31.66 16 15 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 16 C 0.01 0.41 5.47 84.66 0.46 0.87 16 17 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 18 Si 0.96 43.87 27.47 68.60 1.88 45.75 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 22 N -0.27 -7.35 10.61 -48.17 -0.51 -7.86 16 23 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.11 0.09 8.14 -2.39 -0.02 0.08 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.22 7.27 -2.39 -0.02 0.20 16 29 H 0.06 0.96 8.00 -2.39 -0.02 0.94 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.22 1.53 7.47 -2.91 -0.02 1.51 16 33 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.41 14.01 8.20 -92.71 -0.76 13.25 16 35 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.03 1.57 7.20 -2.39 -0.02 1.55 16 38 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -78.35 329.14 3.49 -74.86 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.22 Total: 15.59 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 5.22 Total: -5.89 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.77 Total: -103.61 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.07 Total: -26.71 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -78.35 3.49 -74.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594003997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.982 kcal (2) G-P(sol) polarization free energy of solvation -78.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds