Wall clock time and date at job start Mon Mar 30 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.36338 * 125.85770 * 35.02737 * 4 2 1 6 6 C 1.35131 * 108.89319 * 179.97438 * 5 4 2 7 7 C 1.40981 * 108.24026 * 359.97438 * 6 5 4 8 8 N 1.33309 * 126.35506 * 179.97438 * 7 6 5 9 9 C 1.32912 * 119.99846 * 0.02562 * 8 7 6 10 10 O 1.21586 * 120.00186 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99776 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.46794 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46854 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47211 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99921 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00255 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99783 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00336 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46920 * 60.00369 * 18 16 14 20 20 H 1.48500 * 109.47169 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47118 * 300.00645 * 18 16 14 22 22 N 1.37280 * 107.28858 * 359.77566 * 7 6 5 23 23 H 0.96999 * 126.35457 * 180.24656 * 22 7 6 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.07993 * 125.55628 * 359.93881 * 5 4 2 32 32 H 1.08003 * 125.87559 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47068 * 300.00322 * 11 9 8 34 34 H 1.09000 * 109.46737 * 60.00359 * 11 9 8 35 35 H 1.09000 * 109.47162 * 299.99758 * 12 11 9 36 36 H 1.09000 * 109.47599 * 60.00380 * 12 11 9 37 37 H 1.08993 * 109.47383 * 300.00061 * 13 12 11 38 38 H 1.09008 * 109.47228 * 60.00109 * 13 12 11 39 39 H 0.97005 * 119.99774 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.4316 -0.6688 -2.4265 6 6 2.1672 -1.4198 -3.2756 7 6 3.2663 -1.9420 -2.5637 8 7 4.2217 -2.7323 -3.0534 9 6 4.1911 -3.0987 -4.3306 10 8 3.2920 -2.7128 -5.0525 11 6 5.2714 -3.9917 -4.8844 12 6 5.0020 -4.2591 -6.3665 13 6 6.0991 -5.1652 -6.9289 14 6 5.8335 -5.4291 -8.3886 15 1 4.9688 -4.9938 -8.8674 16 6 6.6947 -6.2254 -9.1131 17 7 7.7480 -6.7551 -8.5302 18 14 6.3659 -6.5521 -10.9227 19 1 6.3574 -5.2655 -11.6643 20 1 7.4307 -7.4316 -11.4685 21 1 5.0477 -7.2191 -11.0737 22 7 3.1727 -1.4819 -1.2736 23 1 3.7897 -1.6710 -0.5495 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.5261 -0.1382 -2.6811 32 1 1.9508 -1.5900 -4.3199 33 1 6.2392 -3.5026 -4.7739 34 1 5.2771 -4.9358 -4.3396 35 1 4.0341 -4.7481 -6.4774 36 1 4.9965 -3.3149 -6.9111 37 1 7.0667 -4.6759 -6.8181 38 1 6.1050 -6.1096 -6.3845 39 1 8.3542 -7.3151 -9.0400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594013779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:18 Heat of formation + Delta-G solvation = 56.042868 kcal Electronic energy + Delta-G solvation = -19106.027634 eV Core-core repulsion = 16051.358385 eV Total energy + Delta-G solvation = -3054.669249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66884 -38.81464 -36.33032 -33.97159 -33.01342 -31.86328 -31.70436 -29.26924 -28.06398 -27.46849 -24.10597 -23.00357 -22.00384 -21.52500 -19.85764 -18.88353 -17.76435 -16.13898 -16.05883 -15.89320 -15.66165 -14.98839 -14.66562 -14.64705 -14.25265 -13.74046 -13.57268 -13.42766 -13.01043 -12.85771 -12.72901 -12.14480 -12.06898 -11.91868 -11.53415 -11.05368 -10.65843 -10.52564 -10.43073 -10.31908 -9.72008 -9.57380 -9.37956 -9.06384 -8.90233 -8.52605 -8.15376 -7.54397 -5.81450 -3.82067 0.98274 1.07243 2.49372 3.30719 3.47042 3.49493 3.53854 3.87718 4.09037 4.19068 4.22487 4.29294 4.61559 4.74536 4.78607 4.88721 4.94093 5.00442 5.22303 5.31001 5.40555 5.46217 5.53802 6.01793 6.10045 6.23240 6.36520 6.61762 6.73357 6.98129 7.07623 7.24961 7.39986 7.44322 7.91259 7.98582 8.09086 8.22307 8.66498 9.18511 9.25428 9.80489 11.30171 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.063168 B = 0.002725 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.154039 B =10273.141054 C =10541.135701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.158 3.842 3 C -0.172 4.172 4 N -0.390 5.390 5 C 0.140 3.860 6 C -0.296 4.296 7 C 0.478 3.522 8 N -0.677 5.677 9 C 0.498 3.502 10 O -0.564 6.564 11 C -0.113 4.113 12 C -0.096 4.096 13 C 0.020 3.980 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.053 3.947 17 N -0.899 5.899 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 N -0.483 5.483 23 H 0.446 0.554 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.189 0.811 32 H 0.192 0.808 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.981 18.106 23.895 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 C -0.231 4.231 4 N -0.183 5.183 5 C 0.004 3.996 6 C -0.327 4.327 7 C 0.223 3.777 8 N -0.435 5.435 9 C 0.287 3.713 10 O -0.444 6.444 11 C -0.153 4.153 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.211 5.211 23 H 0.293 0.707 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.206 0.794 32 H 0.209 0.791 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.632 17.938 24.123 33.882 hybrid contribution -0.188 -0.101 -0.903 0.928 sum -15.819 17.837 23.219 33.280 Atomic orbital electron populations 1.22207 0.91957 1.03953 1.04136 1.21449 0.95501 0.92704 0.84652 1.22366 1.02433 0.94632 1.03636 1.46808 1.16317 1.44594 1.10543 1.22712 0.97536 0.96875 0.82476 1.22868 0.98612 1.07498 1.03752 1.19464 0.89903 0.86302 0.82026 1.69086 1.28947 1.26788 1.18715 1.21538 0.86140 0.80366 0.83265 1.90495 1.36718 1.54105 1.63035 1.21426 0.96867 0.98570 0.98444 1.21445 1.00465 1.00380 0.91103 1.19133 0.93174 0.94173 0.95255 1.21285 1.09272 1.29247 0.95417 0.92708 1.25032 0.95274 0.96101 0.98261 1.69974 1.13941 1.33770 1.36209 0.86665 0.77701 0.78088 0.85577 1.20306 1.21433 1.20308 1.44303 1.18883 1.46060 1.11812 0.70685 0.91014 0.91000 0.89566 0.88420 0.91691 0.91266 0.90198 0.79420 0.79142 0.89855 0.89851 0.93121 0.93127 0.96652 0.96655 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.22 8.84 37.16 0.33 0.11 16 2 C 0.16 0.44 3.93 -67.93 -0.27 0.18 16 3 C -0.17 -0.41 9.52 37.16 0.35 -0.06 16 4 N -0.39 -2.61 3.56 -54.55 -0.19 -2.80 16 5 C 0.14 1.10 10.57 -16.65 -0.18 0.92 16 6 C -0.30 -3.93 9.51 -39.65 -0.38 -4.30 16 7 C 0.48 7.03 8.07 -155.19 -1.25 5.78 16 8 N -0.68 -12.51 10.51 -11.59 -0.12 -12.63 16 9 C 0.50 10.58 7.71 -11.81 -0.09 10.49 16 10 O -0.56 -12.78 12.89 5.29 0.07 -12.72 16 11 C -0.11 -2.45 5.78 -27.88 -0.16 -2.61 16 12 C -0.10 -2.39 4.44 -26.73 -0.12 -2.51 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.51 -15.91 9.11 -34.44 -0.31 -16.23 16 15 H 0.05 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -28.65 13.29 55.43 0.74 -27.92 16 18 Si 0.89 23.10 29.54 -169.99 -5.02 18.08 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 N -0.48 -4.60 7.37 31.32 0.23 -4.37 16 23 H 0.45 3.16 8.96 -182.55 -1.64 1.53 16 24 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.07 7.13 -51.93 -0.37 -0.30 16 26 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.19 0.68 7.23 -52.49 -0.38 0.31 16 32 H 0.19 3.05 5.77 -52.48 -0.30 2.75 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -39.28 329.13 -8.95 -48.24 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -7.30 Total: -4.58 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.31 Total: -6.25 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.65 Total: -47.72 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -39.28 -8.95 -48.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594013779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.278 kcal (2) G-P(sol) polarization free energy of solvation -39.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds